Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3363

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT3362 and BT3363 are separated by 31 nucleotidesBT3363 and BT3364 are separated by 40 nucleotidesBT3364 and BT3365 are separated by 20 nucleotides BT3362: BT3362 - heptosyltransferase (NCBI ptt file), at 4,336,913 to 4,337,944 BT3362 BT3363: BT3363 - lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file), at 4,337,976 to 4,338,950 BT3363 BT3364: BT3364 - hypothetical protein (NCBI ptt file), at 4,338,991 to 4,339,734 BT3364 BT3365: BT3365 - putative glycosyltransferase (NCBI ptt file), at 4,339,755 to 4,341,794 BT3365 Position (kb) 4337 4338 4339Strain fitness (log2 ratio) -3 -2 -1 0 1at 4338.020 kb on + strandat 4338.040 kb on + strandat 4338.136 kb on + strand, within BT3363at 4338.184 kb on + strand, within BT3363at 4338.365 kb on + strand, within BT3363at 4338.615 kb on + strand, within BT3363at 4339.732 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
4,338,020 + -3.5
4,338,040 + -1.7
4,338,136 + BT3363 0.16 -2.2
4,338,184 + BT3363 0.21 -1.1
4,338,365 + BT3363 0.40 -1.6
4,338,615 + BT3363 0.66 -3.5
4,339,732 + -0.9

Or see this region's nucleotide sequence