Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03424 and CCNA_03425 overlap by 1 nucleotides CCNA_03425 and CCNA_03426 are separated by 29 nucleotides CCNA_03426 and CCNA_03907 are separated by 296 nucleotides CCNA_03907 and CCNA_03428 are separated by 47 nucleotides CCNA_03428 and CCNA_03429 are separated by 101 nucleotides
CCNA_03424: CCNA_03424 - AAA-family response regulator tacA, at 3,590,254 to 3,591,720
_03424
CCNA_03425: CCNA_03425 - hypothetical protein, at 3,591,720 to 3,591,821
_03425
CCNA_03426: CCNA_03426 - MarR family repressor protein, at 3,591,851 to 3,592,315
_03426
CCNA_03907: CCNA_03907 - hypothetical protein, at 3,592,612 to 3,592,947
_03907
CCNA_03428: CCNA_03428 - conserved hypothetical cytosolic protein, at 3,592,995 to 3,593,264
_03428
CCNA_03429: CCNA_03429 - haloacid dehalogenase superfamily, subfamily IA, at 3,593,366 to 3,593,983
_03429
Position (kb)
3592
3593 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3591.639 kb on + strand at 3591.668 kb on + strand at 3591.668 kb on + strand at 3591.695 kb on - strand at 3591.714 kb on + strand at 3591.727 kb on - strand at 3591.734 kb on + strand, within CCNA_03425 at 3591.769 kb on - strand, within CCNA_03425 at 3591.769 kb on - strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.773 kb on + strand, within CCNA_03425 at 3591.779 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.781 kb on - strand, within CCNA_03425 at 3591.823 kb on - strand at 3591.856 kb on + strand at 3591.874 kb on + strand at 3591.912 kb on + strand, within CCNA_03426 at 3591.912 kb on + strand, within CCNA_03426 at 3591.912 kb on + strand, within CCNA_03426 at 3591.920 kb on - strand, within CCNA_03426 at 3591.920 kb on - strand, within CCNA_03426 at 3591.925 kb on - strand, within CCNA_03426 at 3591.964 kb on + strand, within CCNA_03426 at 3591.964 kb on + strand, within CCNA_03426 at 3591.972 kb on - strand, within CCNA_03426 at 3591.975 kb on + strand, within CCNA_03426 at 3591.975 kb on + strand, within CCNA_03426 at 3591.983 kb on - strand, within CCNA_03426 at 3591.987 kb on - strand, within CCNA_03426 at 3592.050 kb on + strand, within CCNA_03426 at 3592.051 kb on - strand, within CCNA_03426 at 3592.056 kb on - strand, within CCNA_03426 at 3592.068 kb on - strand, within CCNA_03426 at 3592.068 kb on - strand, within CCNA_03426 at 3592.075 kb on + strand, within CCNA_03426 at 3592.083 kb on - strand, within CCNA_03426 at 3592.096 kb on - strand, within CCNA_03426 at 3592.103 kb on - strand, within CCNA_03426 at 3592.129 kb on + strand, within CCNA_03426 at 3592.129 kb on + strand, within CCNA_03426 at 3592.137 kb on - strand, within CCNA_03426 at 3592.137 kb on - strand, within CCNA_03426 at 3592.152 kb on + strand at 3592.152 kb on + strand, within CCNA_03426 at 3592.155 kb on - strand, within CCNA_03426 at 3592.184 kb on - strand, within CCNA_03426 at 3592.222 kb on - strand, within CCNA_03426 at 3592.239 kb on - strand, within CCNA_03426 at 3592.239 kb on - strand, within CCNA_03426 at 3592.244 kb on + strand, within CCNA_03426 at 3592.306 kb on - strand at 3592.320 kb on - strand at 3592.325 kb on - strand at 3592.378 kb on + strand at 3592.416 kb on - strand at 3592.583 kb on + strand at 3592.586 kb on - strand at 3592.610 kb on + strand at 3592.610 kb on + strand at 3592.618 kb on - strand at 3592.618 kb on - strand at 3592.664 kb on - strand, within CCNA_03907 at 3592.665 kb on - strand, within CCNA_03907 at 3592.694 kb on + strand, within CCNA_03907 at 3592.694 kb on + strand, within CCNA_03907 at 3592.702 kb on - strand, within CCNA_03907 at 3592.702 kb on - strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.716 kb on + strand, within CCNA_03907 at 3592.729 kb on + strand, within CCNA_03907 at 3592.754 kb on - strand, within CCNA_03907 at 3592.830 kb on + strand, within CCNA_03907 at 3593.001 kb on - strand at 3593.369 kb on + strand at 3593.391 kb on + strand at 3593.423 kb on - strand at 3593.435 kb on + strand, within CCNA_03429 at 3593.438 kb on + strand, within CCNA_03429 at 3593.480 kb on - strand, within CCNA_03429 at 3593.491 kb on - strand, within CCNA_03429 at 3593.513 kb on + strand, within CCNA_03429 at 3593.521 kb on - strand, within CCNA_03429 at 3593.570 kb on - strand, within CCNA_03429 at 3593.580 kb on - strand, within CCNA_03429 at 3593.607 kb on + strand, within CCNA_03429 at 3593.607 kb on + strand, within CCNA_03429 at 3593.615 kb on - strand at 3593.731 kb on + strand, within CCNA_03429 at 3593.751 kb on + strand, within CCNA_03429 at 3593.846 kb on - strand, within CCNA_03429
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 3,591,639 + -1.0 3,591,668 + -0.6 3,591,668 + -0.1 3,591,695 - +0.8 3,591,714 + -1.1 3,591,727 - -1.2 3,591,734 + CCNA_03425 0.14 -0.5 3,591,769 - CCNA_03425 0.48 +0.2 3,591,769 - CCNA_03425 0.48 +1.1 3,591,773 + CCNA_03425 0.52 -1.1 3,591,773 + CCNA_03425 0.52 +1.5 3,591,773 + CCNA_03425 0.52 +0.0 3,591,773 + CCNA_03425 0.52 -0.3 3,591,773 + CCNA_03425 0.52 +1.1 3,591,773 + CCNA_03425 0.52 -1.1 3,591,773 + CCNA_03425 0.52 -1.0 3,591,773 + CCNA_03425 0.52 -0.0 3,591,773 + CCNA_03425 0.52 +0.0 3,591,773 + CCNA_03425 0.52 -0.6 3,591,773 + CCNA_03425 0.52 -0.3 3,591,773 + CCNA_03425 0.52 +0.8 3,591,773 + CCNA_03425 0.52 -0.6 3,591,773 + CCNA_03425 0.52 -0.4 3,591,779 - CCNA_03425 0.58 -1.0 3,591,781 - CCNA_03425 0.60 -0.2 3,591,781 - CCNA_03425 0.60 -0.3 3,591,781 - CCNA_03425 0.60 +0.6 3,591,781 - CCNA_03425 0.60 -1.4 3,591,781 - CCNA_03425 0.60 -0.3 3,591,781 - CCNA_03425 0.60 +0.1 3,591,781 - CCNA_03425 0.60 +0.4 3,591,781 - CCNA_03425 0.60 -0.9 3,591,781 - CCNA_03425 0.60 +0.9 3,591,781 - CCNA_03425 0.60 -0.7 3,591,823 - -1.4 3,591,856 + +0.9 3,591,874 + -0.7 3,591,912 + CCNA_03426 0.13 -0.3 3,591,912 + CCNA_03426 0.13 -1.9 3,591,912 + CCNA_03426 0.13 -1.3 3,591,920 - CCNA_03426 0.15 -0.2 3,591,920 - CCNA_03426 0.15 +0.9 3,591,925 - CCNA_03426 0.16 -0.3 3,591,964 + CCNA_03426 0.24 +0.8 3,591,964 + CCNA_03426 0.24 +0.2 3,591,972 - CCNA_03426 0.26 +1.9 3,591,975 + CCNA_03426 0.27 -1.2 3,591,975 + CCNA_03426 0.27 -0.1 3,591,983 - CCNA_03426 0.28 +1.0 3,591,987 - CCNA_03426 0.29 +0.2 3,592,050 + CCNA_03426 0.43 -0.5 3,592,051 - CCNA_03426 0.43 +0.6 3,592,056 - CCNA_03426 0.44 +0.7 3,592,068 - CCNA_03426 0.47 +0.4 3,592,068 - CCNA_03426 0.47 -0.1 3,592,075 + CCNA_03426 0.48 -0.1 3,592,083 - CCNA_03426 0.50 +0.0 3,592,096 - CCNA_03426 0.53 -1.9 3,592,103 - CCNA_03426 0.54 -2.0 3,592,129 + CCNA_03426 0.60 +0.6 3,592,129 + CCNA_03426 0.60 -0.9 3,592,137 - CCNA_03426 0.62 -2.6 3,592,137 - CCNA_03426 0.62 +1.4 3,592,152 + +1.7 3,592,152 + CCNA_03426 0.65 +0.9 3,592,155 - CCNA_03426 0.65 +0.3 3,592,184 - CCNA_03426 0.72 -0.3 3,592,222 - CCNA_03426 0.80 -2.4 3,592,239 - CCNA_03426 0.83 +0.8 3,592,239 - CCNA_03426 0.83 -0.4 3,592,244 + CCNA_03426 0.85 -0.7 3,592,306 - -0.2 3,592,320 - +0.8 3,592,325 - +0.7 3,592,378 + -1.8 3,592,416 - +0.5 3,592,583 + -0.8 3,592,586 - -1.4 3,592,610 + -1.5 3,592,610 + +0.0 3,592,618 - -0.6 3,592,618 - -0.6 3,592,664 - CCNA_03907 0.15 +0.1 3,592,665 - CCNA_03907 0.16 +0.2 3,592,694 + CCNA_03907 0.24 -0.8 3,592,694 + CCNA_03907 0.24 -0.6 3,592,702 - CCNA_03907 0.27 -0.3 3,592,702 - CCNA_03907 0.27 -0.9 3,592,716 + CCNA_03907 0.31 -0.3 3,592,716 + CCNA_03907 0.31 +0.0 3,592,716 + CCNA_03907 0.31 -1.8 3,592,729 + CCNA_03907 0.35 -0.8 3,592,754 - CCNA_03907 0.42 -0.6 3,592,830 + CCNA_03907 0.65 -0.3 3,593,001 - -0.1 3,593,369 + -0.2 3,593,391 + -0.8 3,593,423 - +2.0 3,593,435 + CCNA_03429 0.11 +0.0 3,593,438 + CCNA_03429 0.12 -1.7 3,593,480 - CCNA_03429 0.18 +1.4 3,593,491 - CCNA_03429 0.20 -1.6 3,593,513 + CCNA_03429 0.24 -0.2 3,593,521 - CCNA_03429 0.25 +0.4 3,593,570 - CCNA_03429 0.33 -0.2 3,593,580 - CCNA_03429 0.35 +0.3 3,593,607 + CCNA_03429 0.39 +0.7 3,593,607 + CCNA_03429 0.39 +0.9 3,593,615 - +0.7 3,593,731 + CCNA_03429 0.59 +0.8 3,593,751 + CCNA_03429 0.62 +0.5 3,593,846 - CCNA_03429 0.78 -0.2
Or see this region's nucleotide sequence