Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02440 and CA265_RS02445 are separated by 5 nucleotides CA265_RS02445 and CA265_RS02450 are separated by 81 nucleotides CA265_RS02450 and CA265_RS02455 are separated by 80 nucleotides
CA265_RS02440: CA265_RS02440 - TldD protein, at 602,450 to 604,087
_RS02440
CA265_RS02445: CA265_RS02445 - peptidase C69, at 604,093 to 605,433
_RS02445
CA265_RS02450: CA265_RS02450 - hypothetical protein, at 605,515 to 606,303
_RS02450
CA265_RS02455: CA265_RS02455 - Fe-S oxidoreductase, at 606,384 to 607,679
_RS02455
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.115 kb on - strand, within CA265_RS02440 at 603.177 kb on - strand, within CA265_RS02440 at 603.183 kb on - strand, within CA265_RS02440 at 603.210 kb on + strand, within CA265_RS02440 at 603.265 kb on + strand, within CA265_RS02440 at 603.265 kb on + strand, within CA265_RS02440 at 603.266 kb on - strand, within CA265_RS02440 at 603.266 kb on - strand, within CA265_RS02440 at 603.286 kb on - strand, within CA265_RS02440 at 603.327 kb on - strand, within CA265_RS02440 at 603.354 kb on + strand, within CA265_RS02440 at 603.355 kb on - strand, within CA265_RS02440 at 603.360 kb on + strand, within CA265_RS02440 at 603.425 kb on + strand, within CA265_RS02440 at 603.450 kb on + strand, within CA265_RS02440 at 603.480 kb on - strand, within CA265_RS02440 at 603.499 kb on + strand, within CA265_RS02440 at 603.522 kb on + strand, within CA265_RS02440 at 603.522 kb on + strand, within CA265_RS02440 at 603.531 kb on + strand, within CA265_RS02440 at 603.635 kb on - strand, within CA265_RS02440 at 603.635 kb on - strand, within CA265_RS02440 at 603.645 kb on + strand, within CA265_RS02440 at 603.686 kb on - strand, within CA265_RS02440 at 603.782 kb on + strand, within CA265_RS02440 at 603.782 kb on + strand, within CA265_RS02440 at 603.783 kb on - strand, within CA265_RS02440 at 603.824 kb on + strand, within CA265_RS02440 at 603.852 kb on - strand at 603.883 kb on + strand, within CA265_RS02440 at 603.903 kb on - strand, within CA265_RS02440 at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.020 kb on + strand at 604.057 kb on + strand at 604.058 kb on - strand at 604.063 kb on + strand at 604.137 kb on + strand at 604.142 kb on + strand at 604.143 kb on - strand at 604.143 kb on - strand at 604.150 kb on + strand at 604.176 kb on - strand at 604.305 kb on - strand, within CA265_RS02445 at 604.414 kb on + strand, within CA265_RS02445 at 604.431 kb on + strand, within CA265_RS02445 at 604.516 kb on - strand, within CA265_RS02445 at 604.583 kb on + strand, within CA265_RS02445 at 604.584 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.597 kb on - strand, within CA265_RS02445 at 604.618 kb on - strand, within CA265_RS02445 at 604.684 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.714 kb on - strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.715 kb on + strand, within CA265_RS02445 at 604.773 kb on + strand, within CA265_RS02445 at 604.774 kb on - strand, within CA265_RS02445 at 604.780 kb on - strand, within CA265_RS02445 at 604.785 kb on - strand, within CA265_RS02445 at 604.966 kb on - strand, within CA265_RS02445 at 604.966 kb on - strand, within CA265_RS02445 at 605.021 kb on + strand, within CA265_RS02445 at 605.156 kb on + strand, within CA265_RS02445 at 605.156 kb on + strand, within CA265_RS02445 at 605.157 kb on - strand, within CA265_RS02445 at 605.157 kb on - strand, within CA265_RS02445 at 605.177 kb on - strand, within CA265_RS02445 at 605.190 kb on - strand, within CA265_RS02445 at 605.190 kb on - strand, within CA265_RS02445 at 605.259 kb on + strand, within CA265_RS02445 at 605.260 kb on - strand, within CA265_RS02445 at 605.302 kb on - strand at 605.348 kb on + strand at 605.372 kb on - strand at 605.442 kb on + strand at 605.454 kb on + strand at 605.455 kb on - strand at 606.310 kb on - strand at 606.317 kb on - strand at 606.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol% remove 603,115 - CA265_RS02440 0.41 +0.7 603,177 - CA265_RS02440 0.44 -1.1 603,183 - CA265_RS02440 0.45 -0.4 603,210 + CA265_RS02440 0.46 -0.7 603,265 + CA265_RS02440 0.50 +0.2 603,265 + CA265_RS02440 0.50 +0.2 603,266 - CA265_RS02440 0.50 +0.5 603,266 - CA265_RS02440 0.50 -1.3 603,286 - CA265_RS02440 0.51 +0.8 603,327 - CA265_RS02440 0.54 -0.0 603,354 + CA265_RS02440 0.55 -0.9 603,355 - CA265_RS02440 0.55 -0.7 603,360 + CA265_RS02440 0.56 +0.3 603,425 + CA265_RS02440 0.60 -0.1 603,450 + CA265_RS02440 0.61 -0.3 603,480 - CA265_RS02440 0.63 -0.1 603,499 + CA265_RS02440 0.64 -0.5 603,522 + CA265_RS02440 0.65 +1.1 603,522 + CA265_RS02440 0.65 +0.3 603,531 + CA265_RS02440 0.66 -1.8 603,635 - CA265_RS02440 0.72 +0.3 603,635 - CA265_RS02440 0.72 -0.3 603,645 + CA265_RS02440 0.73 +0.8 603,686 - CA265_RS02440 0.75 -0.6 603,782 + CA265_RS02440 0.81 +0.2 603,782 + CA265_RS02440 0.81 -0.7 603,783 - CA265_RS02440 0.81 -2.2 603,824 + CA265_RS02440 0.84 +0.2 603,852 - -0.3 603,883 + CA265_RS02440 0.87 -1.7 603,903 - CA265_RS02440 0.89 -0.2 604,011 + -0.5 604,012 - -0.5 604,012 - +0.8 604,012 - -0.3 604,020 + -1.3 604,057 + +1.1 604,058 - +0.0 604,063 + -0.4 604,137 + -0.3 604,142 + -0.3 604,143 - -0.6 604,143 - -0.1 604,150 + +0.4 604,176 - +0.9 604,305 - CA265_RS02445 0.16 -1.1 604,414 + CA265_RS02445 0.24 +0.7 604,431 + CA265_RS02445 0.25 +1.1 604,516 - CA265_RS02445 0.32 +0.2 604,583 + CA265_RS02445 0.37 +0.7 604,584 - CA265_RS02445 0.37 +0.1 604,597 - CA265_RS02445 0.38 +0.4 604,597 - CA265_RS02445 0.38 -0.1 604,597 - CA265_RS02445 0.38 +1.0 604,618 - CA265_RS02445 0.39 -0.1 604,684 - CA265_RS02445 0.44 +1.1 604,714 - CA265_RS02445 0.46 +1.1 604,714 - CA265_RS02445 0.46 -0.6 604,714 - CA265_RS02445 0.46 +0.1 604,715 + CA265_RS02445 0.46 +0.1 604,715 + CA265_RS02445 0.46 +0.5 604,715 + CA265_RS02445 0.46 +0.6 604,773 + CA265_RS02445 0.51 +0.1 604,774 - CA265_RS02445 0.51 -1.0 604,780 - CA265_RS02445 0.51 +1.3 604,785 - CA265_RS02445 0.52 -1.1 604,966 - CA265_RS02445 0.65 -0.1 604,966 - CA265_RS02445 0.65 +0.4 605,021 + CA265_RS02445 0.69 +0.4 605,156 + CA265_RS02445 0.79 +0.0 605,156 + CA265_RS02445 0.79 +1.3 605,157 - CA265_RS02445 0.79 -0.4 605,157 - CA265_RS02445 0.79 +0.7 605,177 - CA265_RS02445 0.81 +0.9 605,190 - CA265_RS02445 0.82 -0.3 605,190 - CA265_RS02445 0.82 -0.8 605,259 + CA265_RS02445 0.87 +0.1 605,260 - CA265_RS02445 0.87 -0.1 605,302 - -0.4 605,348 + -0.4 605,372 - -0.6 605,442 + -2.1 605,454 + -0.8 605,455 - +1.8 606,310 - +0.4 606,317 - +0.0 606,330 - -1.1
Or see this region's nucleotide sequence