Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21035 and ABZR86_RS21040 are separated by 34 nucleotides ABZR86_RS21040 and ABZR86_RS21045 overlap by 4 nucleotides ABZR86_RS21045 and ABZR86_RS21050 are separated by 49 nucleotides ABZR86_RS21050 and ABZR86_RS21055 are separated by 41 nucleotides ABZR86_RS21055 and ABZR86_RS21060 are separated by 526 nucleotides
ABZR86_RS21035: ABZR86_RS21035 - organic hydroperoxide resistance protein, at 179,192 to 179,605
_RS21035
ABZR86_RS21040: ABZR86_RS21040 - DUF2282 domain-containing protein, at 179,640 to 179,918
_RS21040
ABZR86_RS21045: ABZR86_RS21045 - DoxX family protein, at 179,915 to 180,346
_RS21045
ABZR86_RS21050: ABZR86_RS21050 - alpha/beta hydrolase, at 180,396 to 181,163
_RS21050
ABZR86_RS21055: ABZR86_RS21055 - hypothetical protein, at 181,205 to 181,489
_RS21055
ABZR86_RS21060: ABZR86_RS21060 - DUF692 domain-containing protein, at 182,016 to 182,861
_RS21060
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1 at 179.463 kb on - strand, within ABZR86_RS21035 at 179.893 kb on - strand at 180.065 kb on + strand, within ABZR86_RS21045 at 180.066 kb on - strand, within ABZR86_RS21045 at 180.087 kb on - strand, within ABZR86_RS21045 at 180.296 kb on + strand, within ABZR86_RS21045 at 180.409 kb on + strand at 180.410 kb on - strand at 180.410 kb on - strand at 180.574 kb on - strand, within ABZR86_RS21050 at 180.574 kb on - strand, within ABZR86_RS21050 at 180.701 kb on + strand, within ABZR86_RS21050 at 180.702 kb on - strand, within ABZR86_RS21050 at 180.741 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 181.050 kb on + strand, within ABZR86_RS21050 at 181.101 kb on + strand at 181.101 kb on + strand at 181.101 kb on + strand at 181.101 kb on + strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.487 kb on + strand at 181.487 kb on + strand at 181.487 kb on + strand at 181.488 kb on - strand at 181.488 kb on - strand at 181.488 kb on - strand at 181.492 kb on - strand at 181.492 kb on - strand at 181.509 kb on + strand at 181.510 kb on - strand at 181.510 kb on - strand at 181.579 kb on - strand at 181.579 kb on - strand at 182.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 179,463 - ABZR86_RS21035 0.65 +0.3 179,893 - -0.1 180,065 + ABZR86_RS21045 0.35 -0.1 180,066 - ABZR86_RS21045 0.35 -0.3 180,087 - ABZR86_RS21045 0.40 +0.2 180,296 + ABZR86_RS21045 0.88 +0.1 180,409 + -0.6 180,410 - -0.4 180,410 - -0.6 180,574 - ABZR86_RS21050 0.23 +0.7 180,574 - ABZR86_RS21050 0.23 +0.5 180,701 + ABZR86_RS21050 0.40 +0.0 180,702 - ABZR86_RS21050 0.40 +0.7 180,741 + ABZR86_RS21050 0.45 +0.2 180,846 + ABZR86_RS21050 0.59 +1.6 180,846 + ABZR86_RS21050 0.59 +0.7 180,846 + ABZR86_RS21050 0.59 -0.2 180,846 + ABZR86_RS21050 0.59 +1.0 180,847 - ABZR86_RS21050 0.59 +0.2 180,847 - ABZR86_RS21050 0.59 +0.2 180,847 - ABZR86_RS21050 0.59 +0.0 181,050 + ABZR86_RS21050 0.85 +1.7 181,101 + +1.2 181,101 + +0.0 181,101 + -0.2 181,101 + -0.1 181,102 - +0.3 181,102 - +0.0 181,102 - +0.1 181,102 - -0.7 181,487 + -0.0 181,487 + -0.5 181,487 + -0.0 181,488 - -0.1 181,488 - +0.5 181,488 - -0.3 181,492 - -0.1 181,492 - +0.6 181,509 + -0.4 181,510 - -0.0 181,510 - +0.2 181,579 - +0.2 181,579 - +0.4 182,073 + +0.4
Or see this region's nucleotide sequence