Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20255 and ABZR86_RS20260 overlap by 4 nucleotides ABZR86_RS20260 and ABZR86_RS20265 are separated by 1 nucleotides ABZR86_RS20265 and ABZR86_RS20270 are separated by 184 nucleotides
ABZR86_RS20255: ABZR86_RS20255 - flagellar biosynthesis protein FlhF, at 542,726 to 544,072
_RS20255
ABZR86_RS20260: ABZR86_RS20260 - MinD/ParA family protein, at 544,069 to 545,031
_RS20260
ABZR86_RS20265: ABZR86_RS20265 - RNA polymerase sigma factor FliA, at 545,033 to 545,812
_RS20265
ABZR86_RS20270: ABZR86_RS20270 - chemotaxis response regulator CheY, at 545,997 to 546,404
_RS20270
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 543.401 kb on + strand, within ABZR86_RS20255 at 543.575 kb on + strand, within ABZR86_RS20255 at 543.917 kb on + strand, within ABZR86_RS20255 at 543.918 kb on - strand, within ABZR86_RS20255 at 544.031 kb on + strand at 544.031 kb on + strand at 544.031 kb on + strand at 544.031 kb on + strand at 544.032 kb on - strand at 544.032 kb on - strand at 544.032 kb on - strand at 544.033 kb on + strand at 544.033 kb on + strand at 544.033 kb on + strand at 544.034 kb on - strand at 544.034 kb on - strand at 544.589 kb on + strand, within ABZR86_RS20260 at 544.589 kb on + strand, within ABZR86_RS20260 at 544.589 kb on + strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.590 kb on - strand, within ABZR86_RS20260 at 544.819 kb on - strand, within ABZR86_RS20260 at 544.935 kb on + strand at 544.935 kb on + strand at 544.935 kb on + strand at 544.935 kb on + strand at 544.936 kb on - strand at 545.123 kb on + strand, within ABZR86_RS20265 at 545.213 kb on + strand, within ABZR86_RS20265 at 545.213 kb on + strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.214 kb on - strand, within ABZR86_RS20265 at 545.246 kb on + strand, within ABZR86_RS20265 at 545.246 kb on + strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.247 kb on - strand, within ABZR86_RS20265 at 545.429 kb on + strand, within ABZR86_RS20265 at 545.430 kb on - strand, within ABZR86_RS20265 at 545.633 kb on + strand, within ABZR86_RS20265 at 545.633 kb on + strand, within ABZR86_RS20265 at 545.634 kb on - strand, within ABZR86_RS20265 at 545.634 kb on - strand, within ABZR86_RS20265 at 545.637 kb on - strand, within ABZR86_RS20265 at 545.637 kb on - strand, within ABZR86_RS20265 at 545.968 kb on + strand at 545.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 543,401 + ABZR86_RS20255 0.50 +0.3 543,575 + ABZR86_RS20255 0.63 +0.9 543,917 + ABZR86_RS20255 0.88 +0.1 543,918 - ABZR86_RS20255 0.88 -2.1 544,031 + +1.0 544,031 + +0.5 544,031 + -0.6 544,031 + -0.6 544,032 - -0.2 544,032 - -0.5 544,032 - -0.9 544,033 + -1.1 544,033 + +0.4 544,033 + +0.0 544,034 - -0.2 544,034 - -0.9 544,589 + ABZR86_RS20260 0.54 +1.0 544,589 + ABZR86_RS20260 0.54 -0.1 544,589 + ABZR86_RS20260 0.54 -1.2 544,590 - ABZR86_RS20260 0.54 +0.3 544,590 - ABZR86_RS20260 0.54 +0.3 544,590 - ABZR86_RS20260 0.54 -0.7 544,590 - ABZR86_RS20260 0.54 -0.4 544,590 - ABZR86_RS20260 0.54 +1.3 544,819 - ABZR86_RS20260 0.78 -1.5 544,935 + +0.8 544,935 + +0.4 544,935 + -2.1 544,935 + -0.3 544,936 - -0.3 545,123 + ABZR86_RS20265 0.12 -0.5 545,213 + ABZR86_RS20265 0.23 -0.0 545,213 + ABZR86_RS20265 0.23 -2.3 545,214 - ABZR86_RS20265 0.23 -0.1 545,214 - ABZR86_RS20265 0.23 -0.2 545,214 - ABZR86_RS20265 0.23 -0.3 545,214 - ABZR86_RS20265 0.23 -0.1 545,214 - ABZR86_RS20265 0.23 -1.4 545,246 + ABZR86_RS20265 0.27 -1.3 545,246 + ABZR86_RS20265 0.27 -2.5 545,247 - ABZR86_RS20265 0.27 +1.0 545,247 - ABZR86_RS20265 0.27 +1.0 545,247 - ABZR86_RS20265 0.27 -1.2 545,429 + ABZR86_RS20265 0.51 +1.6 545,430 - ABZR86_RS20265 0.51 +0.5 545,633 + ABZR86_RS20265 0.77 -1.1 545,633 + ABZR86_RS20265 0.77 +1.0 545,634 - ABZR86_RS20265 0.77 +0.2 545,634 - ABZR86_RS20265 0.77 +0.4 545,637 - ABZR86_RS20265 0.77 +0.3 545,637 - ABZR86_RS20265 0.77 -0.1 545,968 + +0.4 545,969 - -0.1
Or see this region's nucleotide sequence