Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06020

Experiment: D-Cellobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS06015 and ABZR86_RS06020 overlap by 1 nucleotidesABZR86_RS06020 and ABZR86_RS06025 are separated by 146 nucleotides ABZR86_RS06015: ABZR86_RS06015 - tRNA pseudouridine(55) synthase TruB, at 1,351,120 to 1,352,049 _RS06015 ABZR86_RS06020: ABZR86_RS06020 - 30S ribosome-binding factor RbfA, at 1,352,049 to 1,352,447 _RS06020 ABZR86_RS06025: ABZR86_RS06025 - translation initiation factor IF-2, at 1,352,594 to 1,355,401 _RS06025 Position (kb) 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1351.235 kb on + strand, within ABZR86_RS06015at 1351.236 kb on - strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.517 kb on + strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.518 kb on - strand, within ABZR86_RS06015at 1351.643 kb on + strand, within ABZR86_RS06015at 1351.643 kb on + strand, within ABZR86_RS06015at 1351.644 kb on - strand, within ABZR86_RS06015at 1351.644 kb on - strand, within ABZR86_RS06015at 1351.644 kb on - strand, within ABZR86_RS06015at 1351.677 kb on - strand, within ABZR86_RS06015at 1351.677 kb on - strand, within ABZR86_RS06015at 1351.677 kb on - strand, within ABZR86_RS06015at 1351.677 kb on - strand, within ABZR86_RS06015at 1352.514 kb on - strandat 1352.560 kb on + strandat 1352.595 kb on + strandat 1352.595 kb on + strandat 1352.602 kb on + strandat 1352.602 kb on + strandat 1352.603 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
remove
1,351,235 + ABZR86_RS06015 0.12 -1.8
1,351,236 - ABZR86_RS06015 0.12 -0.0
1,351,517 + ABZR86_RS06015 0.43 +0.7
1,351,517 + ABZR86_RS06015 0.43 -0.2
1,351,517 + ABZR86_RS06015 0.43 +1.9
1,351,517 + ABZR86_RS06015 0.43 +0.5
1,351,517 + ABZR86_RS06015 0.43 -0.5
1,351,517 + ABZR86_RS06015 0.43 +0.5
1,351,517 + ABZR86_RS06015 0.43 -1.1
1,351,517 + ABZR86_RS06015 0.43 -0.0
1,351,517 + ABZR86_RS06015 0.43 +0.6
1,351,518 - ABZR86_RS06015 0.43 -0.3
1,351,518 - ABZR86_RS06015 0.43 -0.5
1,351,518 - ABZR86_RS06015 0.43 +0.2
1,351,518 - ABZR86_RS06015 0.43 -0.4
1,351,518 - ABZR86_RS06015 0.43 -0.3
1,351,518 - ABZR86_RS06015 0.43 +1.6
1,351,643 + ABZR86_RS06015 0.56 -1.9
1,351,643 + ABZR86_RS06015 0.56 +0.5
1,351,644 - ABZR86_RS06015 0.56 +0.8
1,351,644 - ABZR86_RS06015 0.56 -1.3
1,351,644 - ABZR86_RS06015 0.56 +1.3
1,351,677 - ABZR86_RS06015 0.60 -1.3
1,351,677 - ABZR86_RS06015 0.60 -1.5
1,351,677 - ABZR86_RS06015 0.60 -0.2
1,351,677 - ABZR86_RS06015 0.60 -0.2
1,352,514 - -0.4
1,352,560 + +0.8
1,352,595 + -0.6
1,352,595 + -1.0
1,352,602 + -0.1
1,352,602 + -0.2
1,352,603 - +0.9

Or see this region's nucleotide sequence