Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03590

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03585 and ABZR86_RS03590 are separated by 5 nucleotidesABZR86_RS03590 and ABZR86_RS03595 are separated by 89 nucleotides ABZR86_RS03585: ABZR86_RS03585 - FdhF/YdeP family oxidoreductase, at 765,018 to 767,342 _RS03585 ABZR86_RS03590: ABZR86_RS03590 - formate dehydrogenase accessory sulfurtransferase FdhD, at 767,348 to 768,166 _RS03590 ABZR86_RS03595: ABZR86_RS03595 - FAD-containing oxidoreductase, at 768,256 to 769,626 _RS03595 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1 2 3at 766.469 kb on + strand, within ABZR86_RS03585at 766.470 kb on - strand, within ABZR86_RS03585at 766.470 kb on - strand, within ABZR86_RS03585at 766.773 kb on + strand, within ABZR86_RS03585at 766.773 kb on + strand, within ABZR86_RS03585at 766.804 kb on + strand, within ABZR86_RS03585at 766.824 kb on + strand, within ABZR86_RS03585at 766.825 kb on - strand, within ABZR86_RS03585at 766.825 kb on - strand, within ABZR86_RS03585at 766.893 kb on - strand, within ABZR86_RS03585at 766.998 kb on + strand, within ABZR86_RS03585at 766.998 kb on + strand, within ABZR86_RS03585at 766.998 kb on + strand, within ABZR86_RS03585at 766.999 kb on - strand, within ABZR86_RS03585at 766.999 kb on - strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.013 kb on + strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.014 kb on - strand, within ABZR86_RS03585at 767.019 kb on + strand, within ABZR86_RS03585at 767.019 kb on + strand, within ABZR86_RS03585at 767.144 kb on + strandat 767.144 kb on + strandat 767.165 kb on - strandat 767.217 kb on + strandat 767.217 kb on + strandat 767.217 kb on + strandat 767.218 kb on - strandat 767.218 kb on - strandat 767.218 kb on - strandat 767.283 kb on + strandat 767.284 kb on - strandat 767.453 kb on + strand, within ABZR86_RS03590at 767.513 kb on + strand, within ABZR86_RS03590at 767.594 kb on + strand, within ABZR86_RS03590at 767.594 kb on + strand, within ABZR86_RS03590at 767.594 kb on + strand, within ABZR86_RS03590at 767.594 kb on + strand, within ABZR86_RS03590at 767.594 kb on + strand, within ABZR86_RS03590at 767.595 kb on - strand, within ABZR86_RS03590at 767.595 kb on - strand, within ABZR86_RS03590at 767.595 kb on - strand, within ABZR86_RS03590at 767.595 kb on - strand, within ABZR86_RS03590at 767.865 kb on + strand, within ABZR86_RS03590at 767.866 kb on - strand, within ABZR86_RS03590at 767.866 kb on - strand, within ABZR86_RS03590at 767.866 kb on - strand, within ABZR86_RS03590at 767.866 kb on - strand, within ABZR86_RS03590at 767.975 kb on + strand, within ABZR86_RS03590at 767.975 kb on + strand, within ABZR86_RS03590at 767.975 kb on + strand, within ABZR86_RS03590at 768.116 kb on + strandat 768.117 kb on - strandat 768.117 kb on - strandat 768.117 kb on - strandat 768.427 kb on + strand, within ABZR86_RS03595at 768.428 kb on - strand, within ABZR86_RS03595at 768.428 kb on - strand, within ABZR86_RS03595at 768.438 kb on + strand, within ABZR86_RS03595at 768.439 kb on - strand, within ABZR86_RS03595at 768.439 kb on - strand, within ABZR86_RS03595at 768.461 kb on - strand, within ABZR86_RS03595at 768.621 kb on + strand, within ABZR86_RS03595at 768.793 kb on + strand, within ABZR86_RS03595at 768.793 kb on + strand, within ABZR86_RS03595at 768.793 kb on + strand, within ABZR86_RS03595at 768.793 kb on + strand, within ABZR86_RS03595at 768.793 kb on + strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.794 kb on - strand, within ABZR86_RS03595at 768.795 kb on + strand, within ABZR86_RS03595at 768.795 kb on + strand, within ABZR86_RS03595at 768.796 kb on - strand, within ABZR86_RS03595at 769.053 kb on - strand, within ABZR86_RS03595at 769.068 kb on + strand, within ABZR86_RS03595at 769.161 kb on + strand, within ABZR86_RS03595at 769.161 kb on + strand, within ABZR86_RS03595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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766,469 + ABZR86_RS03585 0.62 +0.4
766,470 - ABZR86_RS03585 0.62 -1.6
766,470 - ABZR86_RS03585 0.62 -0.5
766,773 + ABZR86_RS03585 0.75 -0.6
766,773 + ABZR86_RS03585 0.75 +0.1
766,804 + ABZR86_RS03585 0.77 -0.2
766,824 + ABZR86_RS03585 0.78 +0.2
766,825 - ABZR86_RS03585 0.78 +0.0
766,825 - ABZR86_RS03585 0.78 -1.2
766,893 - ABZR86_RS03585 0.81 +0.7
766,998 + ABZR86_RS03585 0.85 -0.4
766,998 + ABZR86_RS03585 0.85 -2.2
766,998 + ABZR86_RS03585 0.85 +0.1
766,999 - ABZR86_RS03585 0.85 +0.8
766,999 - ABZR86_RS03585 0.85 +0.5
767,013 + ABZR86_RS03585 0.86 -0.9
767,013 + ABZR86_RS03585 0.86 -0.6
767,013 + ABZR86_RS03585 0.86 +0.2
767,013 + ABZR86_RS03585 0.86 -0.2
767,013 + ABZR86_RS03585 0.86 +0.2
767,013 + ABZR86_RS03585 0.86 -0.4
767,014 - ABZR86_RS03585 0.86 -1.5
767,014 - ABZR86_RS03585 0.86 -0.7
767,014 - ABZR86_RS03585 0.86 +0.0
767,014 - ABZR86_RS03585 0.86 -0.2
767,014 - ABZR86_RS03585 0.86 -0.3
767,014 - ABZR86_RS03585 0.86 -0.2
767,014 - ABZR86_RS03585 0.86 +0.9
767,014 - ABZR86_RS03585 0.86 +0.5
767,019 + ABZR86_RS03585 0.86 -0.6
767,019 + ABZR86_RS03585 0.86 -2.4
767,144 + -0.6
767,144 + +0.6
767,165 - -0.0
767,217 + -1.0
767,217 + +1.7
767,217 + -0.8
767,218 - -0.8
767,218 - +0.4
767,218 - +0.1
767,283 + +0.6
767,284 - -0.0
767,453 + ABZR86_RS03590 0.13 -1.3
767,513 + ABZR86_RS03590 0.20 +0.3
767,594 + ABZR86_RS03590 0.30 -0.0
767,594 + ABZR86_RS03590 0.30 +0.2
767,594 + ABZR86_RS03590 0.30 +0.1
767,594 + ABZR86_RS03590 0.30 -0.2
767,594 + ABZR86_RS03590 0.30 +0.9
767,595 - ABZR86_RS03590 0.30 -0.9
767,595 - ABZR86_RS03590 0.30 -0.8
767,595 - ABZR86_RS03590 0.30 -0.5
767,595 - ABZR86_RS03590 0.30 -0.2
767,865 + ABZR86_RS03590 0.63 +0.5
767,866 - ABZR86_RS03590 0.63 +1.9
767,866 - ABZR86_RS03590 0.63 +0.6
767,866 - ABZR86_RS03590 0.63 +2.0
767,866 - ABZR86_RS03590 0.63 +3.5
767,975 + ABZR86_RS03590 0.77 -0.7
767,975 + ABZR86_RS03590 0.77 -0.1
767,975 + ABZR86_RS03590 0.77 -1.4
768,116 + -1.0
768,117 - +0.5
768,117 - +2.7
768,117 - +0.5
768,427 + ABZR86_RS03595 0.12 -0.5
768,428 - ABZR86_RS03595 0.13 +0.9
768,428 - ABZR86_RS03595 0.13 +1.2
768,438 + ABZR86_RS03595 0.13 -0.3
768,439 - ABZR86_RS03595 0.13 -0.3
768,439 - ABZR86_RS03595 0.13 +0.2
768,461 - ABZR86_RS03595 0.15 +0.5
768,621 + ABZR86_RS03595 0.27 +1.0
768,793 + ABZR86_RS03595 0.39 +0.3
768,793 + ABZR86_RS03595 0.39 -0.2
768,793 + ABZR86_RS03595 0.39 -0.6
768,793 + ABZR86_RS03595 0.39 +0.5
768,793 + ABZR86_RS03595 0.39 -1.1
768,794 - ABZR86_RS03595 0.39 -0.5
768,794 - ABZR86_RS03595 0.39 +2.7
768,794 - ABZR86_RS03595 0.39 -0.9
768,794 - ABZR86_RS03595 0.39 -0.3
768,794 - ABZR86_RS03595 0.39 -0.3
768,794 - ABZR86_RS03595 0.39 +0.2
768,794 - ABZR86_RS03595 0.39 +0.3
768,794 - ABZR86_RS03595 0.39 +0.1
768,795 + ABZR86_RS03595 0.39 +0.3
768,795 + ABZR86_RS03595 0.39 -0.1
768,796 - ABZR86_RS03595 0.39 +1.2
769,053 - ABZR86_RS03595 0.58 +0.1
769,068 + ABZR86_RS03595 0.59 -0.7
769,161 + ABZR86_RS03595 0.66 +0.0
769,161 + ABZR86_RS03595 0.66 +0.1

Or see this region's nucleotide sequence