Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02980 and ABZR86_RS02985 overlap by 14 nucleotides ABZR86_RS02985 and ABZR86_RS02990 are separated by 27 nucleotides ABZR86_RS02990 and ABZR86_RS02995 are separated by 44 nucleotides
ABZR86_RS02980: ABZR86_RS02980 - DUF3182 family protein, at 609,594 to 610,724
_RS02980
ABZR86_RS02985: ABZR86_RS02985 - alpha/beta fold hydrolase, at 610,711 to 611,526
_RS02985
ABZR86_RS02990: ABZR86_RS02990 - enterotoxin A family protein, at 611,554 to 612,549
_RS02990
ABZR86_RS02995: ABZR86_RS02995 - hypothetical protein, at 612,594 to 613,526
_RS02995
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 610.611 kb on + strand, within ABZR86_RS02980 at 610.612 kb on - strand at 610.692 kb on + strand at 610.692 kb on + strand at 610.693 kb on - strand at 610.693 kb on - strand at 610.693 kb on - strand at 610.880 kb on + strand, within ABZR86_RS02985 at 611.113 kb on + strand, within ABZR86_RS02985 at 611.302 kb on + strand, within ABZR86_RS02985 at 611.338 kb on + strand, within ABZR86_RS02985 at 611.339 kb on - strand, within ABZR86_RS02985 at 611.558 kb on - strand at 611.558 kb on - strand at 611.558 kb on - strand at 611.879 kb on + strand, within ABZR86_RS02990 at 611.879 kb on + strand, within ABZR86_RS02990 at 611.879 kb on + strand, within ABZR86_RS02990 at 611.915 kb on + strand, within ABZR86_RS02990 at 611.915 kb on + strand, within ABZR86_RS02990 at 611.915 kb on + strand, within ABZR86_RS02990 at 611.916 kb on - strand, within ABZR86_RS02990 at 611.984 kb on - strand, within ABZR86_RS02990 at 612.195 kb on + strand, within ABZR86_RS02990 at 612.203 kb on + strand, within ABZR86_RS02990 at 612.231 kb on - strand, within ABZR86_RS02990 at 612.236 kb on + strand, within ABZR86_RS02990 at 612.236 kb on + strand, within ABZR86_RS02990 at 612.236 kb on + strand, within ABZR86_RS02990 at 612.236 kb on + strand, within ABZR86_RS02990 at 612.237 kb on - strand, within ABZR86_RS02990 at 612.237 kb on - strand, within ABZR86_RS02990 at 612.239 kb on - strand, within ABZR86_RS02990 at 612.356 kb on - strand, within ABZR86_RS02990 at 612.371 kb on + strand, within ABZR86_RS02990 at 612.371 kb on + strand, within ABZR86_RS02990 at 612.525 kb on - strand at 612.528 kb on + strand at 612.528 kb on + strand at 612.684 kb on - strand at 612.768 kb on + strand, within ABZR86_RS02995 at 612.941 kb on - strand, within ABZR86_RS02995 at 613.034 kb on + strand, within ABZR86_RS02995 at 613.034 kb on + strand, within ABZR86_RS02995 at 613.035 kb on - strand, within ABZR86_RS02995 at 613.083 kb on + strand, within ABZR86_RS02995 at 613.087 kb on + strand, within ABZR86_RS02995 at 613.088 kb on - strand, within ABZR86_RS02995 at 613.088 kb on - strand, within ABZR86_RS02995 at 613.232 kb on - strand, within ABZR86_RS02995 at 613.237 kb on + strand, within ABZR86_RS02995 at 613.237 kb on + strand, within ABZR86_RS02995 at 613.246 kb on + strand, within ABZR86_RS02995 at 613.246 kb on + strand, within ABZR86_RS02995 at 613.247 kb on - strand, within ABZR86_RS02995 at 613.250 kb on + strand, within ABZR86_RS02995 at 613.251 kb on - strand, within ABZR86_RS02995 at 613.306 kb on - strand, within ABZR86_RS02995 at 613.407 kb on + strand, within ABZR86_RS02995 at 613.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 610,611 + ABZR86_RS02980 0.90 +0.9 610,612 - -0.6 610,692 + +0.0 610,692 + +1.1 610,693 - +2.4 610,693 - +0.3 610,693 - -0.9 610,880 + ABZR86_RS02985 0.21 +0.3 611,113 + ABZR86_RS02985 0.49 +0.0 611,302 + ABZR86_RS02985 0.72 -0.8 611,338 + ABZR86_RS02985 0.77 +0.7 611,339 - ABZR86_RS02985 0.77 -0.3 611,558 - -0.2 611,558 - -0.9 611,558 - -0.1 611,879 + ABZR86_RS02990 0.33 -0.5 611,879 + ABZR86_RS02990 0.33 -0.5 611,879 + ABZR86_RS02990 0.33 -0.0 611,915 + ABZR86_RS02990 0.36 +0.4 611,915 + ABZR86_RS02990 0.36 -0.3 611,915 + ABZR86_RS02990 0.36 -0.2 611,916 - ABZR86_RS02990 0.36 -0.3 611,984 - ABZR86_RS02990 0.43 +0.9 612,195 + ABZR86_RS02990 0.64 -0.4 612,203 + ABZR86_RS02990 0.65 -1.5 612,231 - ABZR86_RS02990 0.68 -0.2 612,236 + ABZR86_RS02990 0.68 +0.1 612,236 + ABZR86_RS02990 0.68 +0.1 612,236 + ABZR86_RS02990 0.68 +0.2 612,236 + ABZR86_RS02990 0.68 -0.1 612,237 - ABZR86_RS02990 0.69 +0.1 612,237 - ABZR86_RS02990 0.69 -0.1 612,239 - ABZR86_RS02990 0.69 -0.1 612,356 - ABZR86_RS02990 0.81 +1.0 612,371 + ABZR86_RS02990 0.82 -0.9 612,371 + ABZR86_RS02990 0.82 -1.6 612,525 - +0.3 612,528 + +0.7 612,528 + +0.1 612,684 - +0.2 612,768 + ABZR86_RS02995 0.19 +0.5 612,941 - ABZR86_RS02995 0.37 +0.2 613,034 + ABZR86_RS02995 0.47 +1.0 613,034 + ABZR86_RS02995 0.47 +0.1 613,035 - ABZR86_RS02995 0.47 -0.2 613,083 + ABZR86_RS02995 0.52 +0.7 613,087 + ABZR86_RS02995 0.53 -2.6 613,088 - ABZR86_RS02995 0.53 +1.8 613,088 - ABZR86_RS02995 0.53 +3.0 613,232 - ABZR86_RS02995 0.68 -1.0 613,237 + ABZR86_RS02995 0.69 +0.6 613,237 + ABZR86_RS02995 0.69 +0.7 613,246 + ABZR86_RS02995 0.70 -0.4 613,246 + ABZR86_RS02995 0.70 -0.1 613,247 - ABZR86_RS02995 0.70 -0.7 613,250 + ABZR86_RS02995 0.70 +0.2 613,251 - ABZR86_RS02995 0.70 +0.9 613,306 - ABZR86_RS02995 0.76 -1.3 613,407 + ABZR86_RS02995 0.87 +0.9 613,435 + +0.3
Or see this region's nucleotide sequence