Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01560 and ABZR86_RS01565 are separated by 134 nucleotides ABZR86_RS01565 and ABZR86_RS01570 are separated by 4 nucleotides ABZR86_RS01570 and ABZR86_RS01575 are separated by 29 nucleotides ABZR86_RS01575 and ABZR86_RS01580 are separated by 67 nucleotides
ABZR86_RS01560: ABZR86_RS01560 - GIY-YIG nuclease family protein, at 338,844 to 339,194
_RS01560
ABZR86_RS01565: ABZR86_RS01565 - hypothetical protein, at 339,329 to 339,631
_RS01565
ABZR86_RS01570: ABZR86_RS01570 - Ohr family peroxiredoxin, at 339,636 to 340,127
_RS01570
ABZR86_RS01575: ABZR86_RS01575 - cytochrome bc complex cytochrome b subunit, at 340,157 to 341,455
_RS01575
ABZR86_RS01580: ABZR86_RS01580 - SDR family oxidoreductase, at 341,523 to 342,284
_RS01580
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 339.185 kb on + strand at 339.186 kb on + strand at 339.186 kb on + strand at 339.192 kb on + strand at 339.193 kb on - strand at 339.196 kb on + strand at 339.196 kb on + strand at 339.196 kb on + strand at 339.197 kb on - strand at 339.261 kb on + strand at 339.261 kb on + strand at 339.262 kb on - strand at 339.305 kb on + strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.309 kb on + strand at 339.310 kb on - strand at 339.310 kb on - strand at 339.310 kb on - strand at 339.361 kb on + strand, within ABZR86_RS01565 at 339.705 kb on - strand, within ABZR86_RS01570 at 340.057 kb on + strand, within ABZR86_RS01570 at 340.058 kb on - strand, within ABZR86_RS01570 at 340.081 kb on + strand at 340.081 kb on + strand at 340.084 kb on + strand at 340.085 kb on - strand at 340.085 kb on - strand at 340.218 kb on + strand at 340.218 kb on + strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.248 kb on + strand at 340.543 kb on - strand, within ABZR86_RS01575 at 340.650 kb on + strand, within ABZR86_RS01575 at 340.651 kb on - strand, within ABZR86_RS01575 at 340.713 kb on + strand, within ABZR86_RS01575 at 340.713 kb on + strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.716 kb on + strand, within ABZR86_RS01575 at 340.717 kb on - strand, within ABZR86_RS01575 at 340.717 kb on - strand, within ABZR86_RS01575 at 340.834 kb on + strand, within ABZR86_RS01575 at 340.923 kb on + strand, within ABZR86_RS01575 at 341.034 kb on + strand, within ABZR86_RS01575 at 341.034 kb on + strand, within ABZR86_RS01575 at 341.061 kb on - strand, within ABZR86_RS01575 at 341.112 kb on + strand, within ABZR86_RS01575 at 341.121 kb on + strand, within ABZR86_RS01575 at 341.122 kb on - strand, within ABZR86_RS01575 at 341.122 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.268 kb on + strand, within ABZR86_RS01575 at 341.268 kb on + strand, within ABZR86_RS01575 at 341.340 kb on + strand at 341.367 kb on + strand at 341.371 kb on - strand at 341.379 kb on + strand at 341.441 kb on + strand at 341.442 kb on - strand at 341.656 kb on + strand, within ABZR86_RS01580 at 341.656 kb on + strand, within ABZR86_RS01580 at 341.656 kb on + strand, within ABZR86_RS01580 at 341.657 kb on - strand, within ABZR86_RS01580 at 341.965 kb on + strand, within ABZR86_RS01580 at 341.965 kb on + strand, within ABZR86_RS01580 at 342.330 kb on - strand at 342.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 339,185 + +0.1 339,186 + -0.9 339,186 + -0.1 339,192 + +1.7 339,193 - +0.2 339,196 + -0.2 339,196 + -0.6 339,196 + -0.6 339,197 - +0.6 339,261 + -0.9 339,261 + -0.6 339,262 - -0.2 339,305 + +1.4 339,306 - +0.8 339,306 - +0.1 339,306 - +0.2 339,306 - -0.0 339,309 + -0.5 339,310 - -0.6 339,310 - +0.0 339,310 - +0.2 339,361 + ABZR86_RS01565 0.11 -0.6 339,705 - ABZR86_RS01570 0.14 -0.3 340,057 + ABZR86_RS01570 0.86 -0.9 340,058 - ABZR86_RS01570 0.86 +1.2 340,081 + -0.0 340,081 + +0.3 340,084 + +1.1 340,085 - -2.3 340,085 - -0.1 340,218 + -0.0 340,218 + +0.4 340,219 - +1.1 340,219 - +1.5 340,219 - -0.0 340,219 - +0.3 340,248 + +0.7 340,543 - ABZR86_RS01575 0.30 +1.9 340,650 + ABZR86_RS01575 0.38 -1.9 340,651 - ABZR86_RS01575 0.38 +0.2 340,713 + ABZR86_RS01575 0.43 +0.0 340,713 + ABZR86_RS01575 0.43 +1.1 340,714 - ABZR86_RS01575 0.43 +0.7 340,714 - ABZR86_RS01575 0.43 +0.1 340,714 - ABZR86_RS01575 0.43 -0.1 340,716 + ABZR86_RS01575 0.43 +1.1 340,717 - ABZR86_RS01575 0.43 +0.1 340,717 - ABZR86_RS01575 0.43 +1.5 340,834 + ABZR86_RS01575 0.52 +0.7 340,923 + ABZR86_RS01575 0.59 -0.4 341,034 + ABZR86_RS01575 0.68 -0.4 341,034 + ABZR86_RS01575 0.68 +1.2 341,061 - ABZR86_RS01575 0.70 +2.7 341,112 + ABZR86_RS01575 0.74 -0.6 341,121 + ABZR86_RS01575 0.74 -0.7 341,122 - ABZR86_RS01575 0.74 +0.9 341,122 - ABZR86_RS01575 0.74 +1.9 341,191 - ABZR86_RS01575 0.80 -0.3 341,191 - ABZR86_RS01575 0.80 -0.0 341,191 - ABZR86_RS01575 0.80 +0.1 341,268 + ABZR86_RS01575 0.86 -0.4 341,268 + ABZR86_RS01575 0.86 +0.5 341,340 + -1.1 341,367 + -0.3 341,371 - -1.6 341,379 + +1.3 341,441 + +0.7 341,442 - +0.1 341,656 + ABZR86_RS01580 0.17 -0.4 341,656 + ABZR86_RS01580 0.17 +0.4 341,656 + ABZR86_RS01580 0.17 +1.9 341,657 - ABZR86_RS01580 0.18 -0.3 341,965 + ABZR86_RS01580 0.58 -0.4 341,965 + ABZR86_RS01580 0.58 -1.6 342,330 - -0.3 342,330 - +0.3
Or see this region's nucleotide sequence