Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00660 and ABZR86_RS00665 are separated by 83 nucleotides ABZR86_RS00665 and ABZR86_RS00670 are separated by 20 nucleotides ABZR86_RS00670 and ABZR86_RS00675 are separated by 15 nucleotides ABZR86_RS00675 and ABZR86_RS00680 are separated by 64 nucleotides
ABZR86_RS00660: ABZR86_RS00660 - recombinase RecA, at 129,643 to 130,677
_RS00660
ABZR86_RS00665: ABZR86_RS00665 - sulfur transferase domain-containing protein, at 130,761 to 131,312
_RS00665
ABZR86_RS00670: ABZR86_RS00670 - hypothetical protein, at 131,333 to 131,488
_RS00670
ABZR86_RS00675: ABZR86_RS00675 - regulatory protein RecX, at 131,504 to 132,025
_RS00675
ABZR86_RS00680: ABZR86_RS00680 - alanine--tRNA ligase, at 132,090 to 134,726
_RS00680
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 130.511 kb on - strand, within ABZR86_RS00660 at 130.516 kb on + strand, within ABZR86_RS00660 at 130.516 kb on + strand, within ABZR86_RS00660 at 130.516 kb on + strand, within ABZR86_RS00660 at 130.516 kb on + strand, within ABZR86_RS00660 at 130.517 kb on - strand, within ABZR86_RS00660 at 130.695 kb on + strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.715 kb on + strand at 130.715 kb on + strand at 130.716 kb on - strand at 130.716 kb on - strand at 130.746 kb on + strand at 130.747 kb on - strand at 130.747 kb on - strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.767 kb on - strand at 130.767 kb on - strand at 130.767 kb on - strand at 130.767 kb on - strand at 130.771 kb on + strand at 130.771 kb on + strand at 130.771 kb on + strand at 130.771 kb on + strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.772 kb on - strand at 130.784 kb on + strand at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.049 kb on + strand, within ABZR86_RS00665 at 131.050 kb on - strand, within ABZR86_RS00665 at 131.050 kb on - strand, within ABZR86_RS00665 at 131.050 kb on - strand, within ABZR86_RS00665 at 131.050 kb on - strand, within ABZR86_RS00665 at 131.050 kb on - strand, within ABZR86_RS00665 at 131.139 kb on + strand, within ABZR86_RS00665 at 131.140 kb on - strand, within ABZR86_RS00665 at 131.140 kb on - strand, within ABZR86_RS00665 at 131.140 kb on - strand, within ABZR86_RS00665 at 131.140 kb on - strand, within ABZR86_RS00665 at 131.358 kb on + strand, within ABZR86_RS00670 at 131.497 kb on - strand at 131.509 kb on + strand at 131.510 kb on - strand at 131.510 kb on - strand at 131.654 kb on + strand, within ABZR86_RS00675 at 131.706 kb on - strand, within ABZR86_RS00675 at 131.763 kb on - strand, within ABZR86_RS00675 at 131.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 130,511 - ABZR86_RS00660 0.84 -0.6 130,516 + ABZR86_RS00660 0.84 +0.8 130,516 + ABZR86_RS00660 0.84 -1.5 130,516 + ABZR86_RS00660 0.84 +0.6 130,516 + ABZR86_RS00660 0.84 -0.4 130,517 - ABZR86_RS00660 0.84 -1.0 130,695 + -0.6 130,695 + +0.4 130,695 + +1.5 130,695 + +0.1 130,695 + +0.5 130,695 + -0.0 130,696 - -1.4 130,696 - -0.1 130,696 - +0.0 130,696 - +0.6 130,696 - -0.1 130,715 + +0.0 130,715 + +0.8 130,716 - -1.4 130,716 - -2.1 130,746 + -0.7 130,747 - -0.7 130,747 - +0.2 130,766 + -0.0 130,766 + +1.4 130,766 + +0.9 130,766 + -0.5 130,766 + -0.8 130,766 + -0.8 130,766 + -0.0 130,767 - -0.6 130,767 - -0.8 130,767 - -0.2 130,767 - -0.3 130,771 + +1.0 130,771 + +0.2 130,771 + -0.6 130,771 + +0.6 130,772 - +0.2 130,772 - -1.0 130,772 - -1.0 130,772 - -0.7 130,772 - +1.4 130,772 - -0.7 130,772 - -0.6 130,772 - +1.0 130,784 + +0.3 131,049 + ABZR86_RS00665 0.52 +3.0 131,049 + ABZR86_RS00665 0.52 -0.3 131,049 + ABZR86_RS00665 0.52 +0.8 131,049 + ABZR86_RS00665 0.52 +0.3 131,049 + ABZR86_RS00665 0.52 -0.2 131,049 + ABZR86_RS00665 0.52 -0.1 131,049 + ABZR86_RS00665 0.52 +0.4 131,050 - ABZR86_RS00665 0.52 -0.3 131,050 - ABZR86_RS00665 0.52 -0.9 131,050 - ABZR86_RS00665 0.52 +0.2 131,050 - ABZR86_RS00665 0.52 +0.6 131,050 - ABZR86_RS00665 0.52 -0.3 131,139 + ABZR86_RS00665 0.68 +0.3 131,140 - ABZR86_RS00665 0.69 -0.4 131,140 - ABZR86_RS00665 0.69 -1.5 131,140 - ABZR86_RS00665 0.69 +0.8 131,140 - ABZR86_RS00665 0.69 +0.2 131,358 + ABZR86_RS00670 0.16 -0.1 131,497 - +1.1 131,509 + -1.0 131,510 - -1.5 131,510 - +0.4 131,654 + ABZR86_RS00675 0.29 -0.5 131,706 - ABZR86_RS00675 0.39 +0.5 131,763 - ABZR86_RS00675 0.50 +0.3 131,973 + +0.0
Or see this region's nucleotide sequence