Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1842

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1840 and BT1841 are separated by 151 nucleotidesBT1841 and BT1842 are separated by 119 nucleotidesBT1842 and BT1843 are separated by 117 nucleotides BT1840: BT1840 - histidyl-tRNA synthetase (NCBI ptt file), at 2,311,032 to 2,312,396 BT1840 BT1841: BT1841 - conserved hypothetical protein (NCBI ptt file), at 2,312,548 to 2,313,228 BT1841 BT1842: BT1842 - alpha-L-fucosidase precursor (NCBI ptt file), at 2,313,348 to 2,314,664 BT1842 BT1843: BT1843 - adenylosuccinate synthetase (NCBI ptt file), at 2,314,782 to 2,316,053 BT1843 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2312.465 kb on - strandat 2312.543 kb on - strandat 2312.543 kb on - strandat 2312.565 kb on + strandat 2312.907 kb on - strandat 2313.229 kb on - strandat 2313.306 kb on - strandat 2313.312 kb on - strandat 2313.338 kb on + strandat 2313.367 kb on - strandat 2313.463 kb on - strandat 2313.482 kb on + strand, within BT1842at 2313.527 kb on + strand, within BT1842at 2313.536 kb on - strand, within BT1842at 2313.604 kb on + strand, within BT1842at 2313.657 kb on + strand, within BT1842at 2313.742 kb on + strand, within BT1842at 2313.769 kb on + strand, within BT1842at 2313.769 kb on + strand, within BT1842at 2313.783 kb on - strand, within BT1842at 2313.788 kb on + strand, within BT1842at 2313.788 kb on + strand, within BT1842at 2313.791 kb on - strand, within BT1842at 2313.800 kb on + strand, within BT1842at 2313.800 kb on + strand, within BT1842at 2313.866 kb on + strand, within BT1842at 2313.895 kb on - strand, within BT1842at 2313.936 kb on - strand, within BT1842at 2313.943 kb on - strand, within BT1842at 2313.960 kb on + strand, within BT1842at 2313.979 kb on + strand, within BT1842at 2313.979 kb on + strand, within BT1842at 2314.067 kb on + strand, within BT1842at 2314.108 kb on + strand, within BT1842at 2314.201 kb on + strand, within BT1842at 2314.204 kb on + strand, within BT1842at 2314.304 kb on - strand, within BT1842at 2314.357 kb on + strandat 2314.361 kb on + strand, within BT1842at 2314.361 kb on + strand, within BT1842at 2314.395 kb on - strand, within BT1842at 2314.441 kb on + strand, within BT1842at 2314.463 kb on + strand, within BT1842at 2314.501 kb on + strand, within BT1842at 2314.532 kb on + strand, within BT1842at 2314.629 kb on + strandat 2314.629 kb on + strandat 2314.632 kb on + strandat 2314.633 kb on - strandat 2314.636 kb on - strandat 2314.636 kb on - strandat 2314.636 kb on - strandat 2314.675 kb on - strandat 2314.678 kb on + strandat 2314.740 kb on - strandat 2314.745 kb on - strandat 2314.745 kb on - strandat 2314.746 kb on + strandat 2314.762 kb on + strandat 2314.793 kb on + strandat 2314.796 kb on - strandat 2314.796 kb on - strandat 2314.879 kb on + strandat 2314.879 kb on + strandat 2314.929 kb on - strand, within BT1843at 2314.957 kb on + strand, within BT1843at 2314.957 kb on + strand, within BT1843at 2314.959 kb on + strand, within BT1843at 2314.959 kb on + strand, within BT1843at 2314.960 kb on - strand, within BT1843at 2315.017 kb on - strand, within BT1843at 2315.023 kb on + strand, within BT1843at 2315.023 kb on + strand, within BT1843at 2315.045 kb on + strand, within BT1843at 2315.101 kb on - strand, within BT1843at 2315.101 kb on - strand, within BT1843at 2315.189 kb on + strand, within BT1843at 2315.245 kb on - strand, within BT1843at 2315.302 kb on - strand, within BT1843at 2315.349 kb on - strand, within BT1843at 2315.486 kb on + strand, within BT1843at 2315.524 kb on + strand, within BT1843at 2315.649 kb on - strand, within BT1843

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,312,465 - -2.1
2,312,543 - -0.5
2,312,543 - -0.2
2,312,565 + -1.8
2,312,907 - +1.5
2,313,229 - -2.4
2,313,306 - +0.4
2,313,312 - -0.3
2,313,338 + +0.2
2,313,367 - -2.3
2,313,463 - +1.1
2,313,482 + BT1842 0.10 -3.0
2,313,527 + BT1842 0.14 +1.4
2,313,536 - BT1842 0.14 +0.6
2,313,604 + BT1842 0.19 +1.2
2,313,657 + BT1842 0.23 -0.8
2,313,742 + BT1842 0.30 -0.7
2,313,769 + BT1842 0.32 -0.3
2,313,769 + BT1842 0.32 -0.8
2,313,783 - BT1842 0.33 -0.9
2,313,788 + BT1842 0.33 -1.2
2,313,788 + BT1842 0.33 -1.0
2,313,791 - BT1842 0.34 -2.3
2,313,800 + BT1842 0.34 +0.1
2,313,800 + BT1842 0.34 -0.1
2,313,866 + BT1842 0.39 -0.9
2,313,895 - BT1842 0.42 +0.7
2,313,936 - BT1842 0.45 -0.3
2,313,943 - BT1842 0.45 -1.6
2,313,960 + BT1842 0.46 +1.0
2,313,979 + BT1842 0.48 -0.3
2,313,979 + BT1842 0.48 -1.0
2,314,067 + BT1842 0.55 -0.8
2,314,108 + BT1842 0.58 +0.2
2,314,201 + BT1842 0.65 +1.1
2,314,204 + BT1842 0.65 -3.3
2,314,304 - BT1842 0.73 -0.5
2,314,357 + +1.3
2,314,361 + BT1842 0.77 -2.0
2,314,361 + BT1842 0.77 -1.4
2,314,395 - BT1842 0.79 -1.4
2,314,441 + BT1842 0.83 +0.4
2,314,463 + BT1842 0.85 -1.0
2,314,501 + BT1842 0.88 +0.7
2,314,532 + BT1842 0.90 -0.4
2,314,629 + +0.4
2,314,629 + +2.7
2,314,632 + +0.4
2,314,633 - -0.0
2,314,636 - +0.8
2,314,636 - -1.4
2,314,636 - +0.1
2,314,675 - +1.3
2,314,678 + +1.2
2,314,740 - +0.2
2,314,745 - -0.3
2,314,745 - -0.1
2,314,746 + -0.8
2,314,762 + +0.3
2,314,793 + +0.9
2,314,796 - -0.6
2,314,796 - +0.7
2,314,879 + -3.0
2,314,879 + -3.4
2,314,929 - BT1843 0.12 -3.3
2,314,957 + BT1843 0.14 -3.5
2,314,957 + BT1843 0.14 -2.9
2,314,959 + BT1843 0.14 -3.0
2,314,959 + BT1843 0.14 -2.8
2,314,960 - BT1843 0.14 -3.4
2,315,017 - BT1843 0.18 -2.0
2,315,023 + BT1843 0.19 -3.7
2,315,023 + BT1843 0.19 -3.4
2,315,045 + BT1843 0.21 -1.9
2,315,101 - BT1843 0.25 -2.0
2,315,101 - BT1843 0.25 -3.1
2,315,189 + BT1843 0.32 -3.5
2,315,245 - BT1843 0.36 -3.5
2,315,302 - BT1843 0.41 -2.3
2,315,349 - BT1843 0.45 -2.4
2,315,486 + BT1843 0.55 -4.0
2,315,524 + BT1843 0.58 -5.2
2,315,649 - BT1843 0.68 +0.4

Or see this region's nucleotide sequence