Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1840 and BT1841 are separated by 151 nucleotides BT1841 and BT1842 are separated by 119 nucleotides BT1842 and BT1843 are separated by 117 nucleotides
BT1840: BT1840 - histidyl-tRNA synthetase (NCBI ptt file), at 2,311,032 to 2,312,396
BT1840
BT1841: BT1841 - conserved hypothetical protein (NCBI ptt file), at 2,312,548 to 2,313,228
BT1841
BT1842: BT1842 - alpha-L-fucosidase precursor (NCBI ptt file), at 2,313,348 to 2,314,664
BT1842
BT1843: BT1843 - adenylosuccinate synthetase (NCBI ptt file), at 2,314,782 to 2,316,053
BT1843
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2312.465 kb on - strand at 2312.543 kb on - strand at 2312.543 kb on - strand at 2312.565 kb on + strand at 2312.907 kb on - strand at 2313.229 kb on - strand at 2313.306 kb on - strand at 2313.312 kb on - strand at 2313.338 kb on + strand at 2313.367 kb on - strand at 2313.463 kb on - strand at 2313.482 kb on + strand, within BT1842 at 2313.527 kb on + strand, within BT1842 at 2313.536 kb on - strand, within BT1842 at 2313.604 kb on + strand, within BT1842 at 2313.657 kb on + strand, within BT1842 at 2313.742 kb on + strand, within BT1842 at 2313.769 kb on + strand, within BT1842 at 2313.769 kb on + strand, within BT1842 at 2313.783 kb on - strand, within BT1842 at 2313.788 kb on + strand, within BT1842 at 2313.788 kb on + strand, within BT1842 at 2313.791 kb on - strand, within BT1842 at 2313.800 kb on + strand, within BT1842 at 2313.800 kb on + strand, within BT1842 at 2313.866 kb on + strand, within BT1842 at 2313.895 kb on - strand, within BT1842 at 2313.936 kb on - strand, within BT1842 at 2313.943 kb on - strand, within BT1842 at 2313.960 kb on + strand, within BT1842 at 2313.979 kb on + strand, within BT1842 at 2313.979 kb on + strand, within BT1842 at 2314.067 kb on + strand, within BT1842 at 2314.108 kb on + strand, within BT1842 at 2314.201 kb on + strand, within BT1842 at 2314.204 kb on + strand, within BT1842 at 2314.304 kb on - strand, within BT1842 at 2314.357 kb on + strand at 2314.361 kb on + strand, within BT1842 at 2314.361 kb on + strand, within BT1842 at 2314.395 kb on - strand, within BT1842 at 2314.441 kb on + strand, within BT1842 at 2314.463 kb on + strand, within BT1842 at 2314.501 kb on + strand, within BT1842 at 2314.532 kb on + strand, within BT1842 at 2314.629 kb on + strand at 2314.629 kb on + strand at 2314.632 kb on + strand at 2314.633 kb on - strand at 2314.636 kb on - strand at 2314.636 kb on - strand at 2314.636 kb on - strand at 2314.675 kb on - strand at 2314.678 kb on + strand at 2314.740 kb on - strand at 2314.745 kb on - strand at 2314.745 kb on - strand at 2314.746 kb on + strand at 2314.762 kb on + strand at 2314.793 kb on + strand at 2314.796 kb on - strand at 2314.796 kb on - strand at 2314.879 kb on + strand at 2314.879 kb on + strand at 2314.929 kb on - strand, within BT1843 at 2314.957 kb on + strand, within BT1843 at 2314.957 kb on + strand, within BT1843 at 2314.959 kb on + strand, within BT1843 at 2314.959 kb on + strand, within BT1843 at 2314.960 kb on - strand, within BT1843 at 2315.017 kb on - strand, within BT1843 at 2315.023 kb on + strand, within BT1843 at 2315.023 kb on + strand, within BT1843 at 2315.045 kb on + strand, within BT1843 at 2315.101 kb on - strand, within BT1843 at 2315.101 kb on - strand, within BT1843 at 2315.189 kb on + strand, within BT1843 at 2315.245 kb on - strand, within BT1843 at 2315.302 kb on - strand, within BT1843 at 2315.349 kb on - strand, within BT1843 at 2315.486 kb on + strand, within BT1843 at 2315.524 kb on + strand, within BT1843 at 2315.649 kb on - strand, within BT1843
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,312,465 - -2.1 2,312,543 - -0.5 2,312,543 - -0.2 2,312,565 + -1.8 2,312,907 - +1.5 2,313,229 - -2.4 2,313,306 - +0.4 2,313,312 - -0.3 2,313,338 + +0.2 2,313,367 - -2.3 2,313,463 - +1.1 2,313,482 + BT1842 0.10 -3.0 2,313,527 + BT1842 0.14 +1.4 2,313,536 - BT1842 0.14 +0.6 2,313,604 + BT1842 0.19 +1.2 2,313,657 + BT1842 0.23 -0.8 2,313,742 + BT1842 0.30 -0.7 2,313,769 + BT1842 0.32 -0.3 2,313,769 + BT1842 0.32 -0.8 2,313,783 - BT1842 0.33 -0.9 2,313,788 + BT1842 0.33 -1.2 2,313,788 + BT1842 0.33 -1.0 2,313,791 - BT1842 0.34 -2.3 2,313,800 + BT1842 0.34 +0.1 2,313,800 + BT1842 0.34 -0.1 2,313,866 + BT1842 0.39 -0.9 2,313,895 - BT1842 0.42 +0.7 2,313,936 - BT1842 0.45 -0.3 2,313,943 - BT1842 0.45 -1.6 2,313,960 + BT1842 0.46 +1.0 2,313,979 + BT1842 0.48 -0.3 2,313,979 + BT1842 0.48 -1.0 2,314,067 + BT1842 0.55 -0.8 2,314,108 + BT1842 0.58 +0.2 2,314,201 + BT1842 0.65 +1.1 2,314,204 + BT1842 0.65 -3.3 2,314,304 - BT1842 0.73 -0.5 2,314,357 + +1.3 2,314,361 + BT1842 0.77 -2.0 2,314,361 + BT1842 0.77 -1.4 2,314,395 - BT1842 0.79 -1.4 2,314,441 + BT1842 0.83 +0.4 2,314,463 + BT1842 0.85 -1.0 2,314,501 + BT1842 0.88 +0.7 2,314,532 + BT1842 0.90 -0.4 2,314,629 + +0.4 2,314,629 + +2.7 2,314,632 + +0.4 2,314,633 - -0.0 2,314,636 - +0.8 2,314,636 - -1.4 2,314,636 - +0.1 2,314,675 - +1.3 2,314,678 + +1.2 2,314,740 - +0.2 2,314,745 - -0.3 2,314,745 - -0.1 2,314,746 + -0.8 2,314,762 + +0.3 2,314,793 + +0.9 2,314,796 - -0.6 2,314,796 - +0.7 2,314,879 + -3.0 2,314,879 + -3.4 2,314,929 - BT1843 0.12 -3.3 2,314,957 + BT1843 0.14 -3.5 2,314,957 + BT1843 0.14 -2.9 2,314,959 + BT1843 0.14 -3.0 2,314,959 + BT1843 0.14 -2.8 2,314,960 - BT1843 0.14 -3.4 2,315,017 - BT1843 0.18 -2.0 2,315,023 + BT1843 0.19 -3.7 2,315,023 + BT1843 0.19 -3.4 2,315,045 + BT1843 0.21 -1.9 2,315,101 - BT1843 0.25 -2.0 2,315,101 - BT1843 0.25 -3.1 2,315,189 + BT1843 0.32 -3.5 2,315,245 - BT1843 0.36 -3.5 2,315,302 - BT1843 0.41 -2.3 2,315,349 - BT1843 0.45 -2.4 2,315,486 + BT1843 0.55 -4.0 2,315,524 + BT1843 0.58 -5.2 2,315,649 - BT1843 0.68 +0.4
Or see this region's nucleotide sequence