Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03992

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03457 and CCNA_03458 overlap by 103 nucleotidesCCNA_03458 and CCNA_03992 overlap by 10 nucleotidesCCNA_03992 and CCNA_03459 are separated by 110 nucleotides CCNA_03457: CCNA_03457 - horizontally transferred transmembrane domain (HTTM) protein, at 3,620,488 to 3,621,267 _03457 CCNA_03458: CCNA_03458 - hypothetical protein, at 3,621,165 to 3,621,650 _03458 CCNA_03992: CCNA_03992 - UDP-glucose 6-dehydrogenase-related protein, at 3,621,641 to 3,621,718 _03992 CCNA_03459: CCNA_03459 - methyl-accepting chemotaxis protein, at 3,621,829 to 3,623,598 _03459 Position (kb) 3621 3622Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3620.650 kb on + strand, within CCNA_03457at 3620.655 kb on + strand, within CCNA_03457at 3620.655 kb on + strand, within CCNA_03457at 3620.655 kb on + strand, within CCNA_03457at 3620.663 kb on - strand, within CCNA_03457at 3620.672 kb on + strand, within CCNA_03457at 3620.672 kb on + strand, within CCNA_03457at 3620.680 kb on - strand, within CCNA_03457at 3620.680 kb on - strand, within CCNA_03457at 3620.685 kb on - strand, within CCNA_03457at 3620.689 kb on + strand, within CCNA_03457at 3620.689 kb on + strand, within CCNA_03457at 3620.697 kb on - strand, within CCNA_03457at 3620.721 kb on + strand, within CCNA_03457at 3620.723 kb on + strand, within CCNA_03457at 3620.798 kb on + strand, within CCNA_03457at 3620.799 kb on - strand, within CCNA_03457at 3620.814 kb on + strand, within CCNA_03457at 3620.819 kb on + strand, within CCNA_03457at 3620.838 kb on - strand, within CCNA_03457at 3620.859 kb on - strand, within CCNA_03457at 3620.977 kb on - strand, within CCNA_03457at 3621.031 kb on + strand, within CCNA_03457at 3621.048 kb on - strand, within CCNA_03457at 3621.080 kb on - strand, within CCNA_03457at 3621.114 kb on - strand, within CCNA_03457at 3621.124 kb on + strand, within CCNA_03457at 3621.156 kb on + strand, within CCNA_03457at 3621.156 kb on + strand, within CCNA_03457at 3621.164 kb on - strand, within CCNA_03457at 3621.164 kb on - strand, within CCNA_03457at 3621.164 kb on - strand, within CCNA_03457at 3621.164 kb on - strand, within CCNA_03457at 3621.227 kb on + strandat 3621.245 kb on + strandat 3621.342 kb on - strand, within CCNA_03458at 3621.344 kb on + strand, within CCNA_03458at 3621.357 kb on + strand, within CCNA_03458at 3621.357 kb on - strand, within CCNA_03458at 3621.376 kb on + strand, within CCNA_03458at 3621.376 kb on + strand, within CCNA_03458at 3621.376 kb on + strand, within CCNA_03458at 3621.444 kb on - strand, within CCNA_03458at 3621.444 kb on - strand, within CCNA_03458at 3621.468 kb on - strand, within CCNA_03458at 3621.538 kb on + strand, within CCNA_03458at 3621.591 kb on - strand, within CCNA_03458at 3621.644 kb on + strandat 3621.645 kb on - strandat 3621.652 kb on - strand, within CCNA_03992at 3621.790 kb on - strandat 3621.883 kb on + strandat 3621.955 kb on - strandat 3621.978 kb on - strandat 3622.045 kb on + strand, within CCNA_03459at 3622.045 kb on + strand, within CCNA_03459at 3622.045 kb on + strand, within CCNA_03459at 3622.046 kb on - strand, within CCNA_03459at 3622.052 kb on + strand, within CCNA_03459at 3622.060 kb on - strand, within CCNA_03459at 3622.080 kb on + strand, within CCNA_03459at 3622.083 kb on - strand, within CCNA_03459at 3622.122 kb on + strand, within CCNA_03459at 3622.126 kb on - strand, within CCNA_03459at 3622.144 kb on - strand, within CCNA_03459at 3622.221 kb on - strand, within CCNA_03459at 3622.234 kb on + strand, within CCNA_03459at 3622.234 kb on + strand, within CCNA_03459at 3622.242 kb on - strand, within CCNA_03459at 3622.242 kb on - strand, within CCNA_03459at 3622.242 kb on - strand, within CCNA_03459at 3622.247 kb on - strand, within CCNA_03459at 3622.310 kb on - strand, within CCNA_03459at 3622.329 kb on - strand, within CCNA_03459at 3622.334 kb on - strand, within CCNA_03459at 3622.334 kb on - strand, within CCNA_03459at 3622.334 kb on - strand, within CCNA_03459at 3622.334 kb on - strand, within CCNA_03459at 3622.350 kb on + strand, within CCNA_03459at 3622.358 kb on - strand, within CCNA_03459at 3622.384 kb on - strand, within CCNA_03459at 3622.418 kb on + strand, within CCNA_03459at 3622.418 kb on + strand, within CCNA_03459at 3622.418 kb on + strand, within CCNA_03459at 3622.418 kb on + strand, within CCNA_03459at 3622.420 kb on - strand, within CCNA_03459at 3622.426 kb on - strand, within CCNA_03459at 3622.426 kb on - strand, within CCNA_03459at 3622.426 kb on - strand, within CCNA_03459at 3622.496 kb on - strand, within CCNA_03459at 3622.585 kb on - strand, within CCNA_03459at 3622.630 kb on + strand, within CCNA_03459at 3622.631 kb on - strand, within CCNA_03459at 3622.690 kb on + strand, within CCNA_03459at 3622.703 kb on - strand, within CCNA_03459

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,620,650 + CCNA_03457 0.21 +1.2
3,620,655 + CCNA_03457 0.21 +1.2
3,620,655 + CCNA_03457 0.21 +1.2
3,620,655 + CCNA_03457 0.21 +0.5
3,620,663 - CCNA_03457 0.22 -0.5
3,620,672 + CCNA_03457 0.24 -1.4
3,620,672 + CCNA_03457 0.24 -0.6
3,620,680 - CCNA_03457 0.25 -1.0
3,620,680 - CCNA_03457 0.25 -0.5
3,620,685 - CCNA_03457 0.25 -0.3
3,620,689 + CCNA_03457 0.26 -0.4
3,620,689 + CCNA_03457 0.26 +2.8
3,620,697 - CCNA_03457 0.27 -2.5
3,620,721 + CCNA_03457 0.30 -1.9
3,620,723 + CCNA_03457 0.30 +4.1
3,620,798 + CCNA_03457 0.40 -1.0
3,620,799 - CCNA_03457 0.40 -1.4
3,620,814 + CCNA_03457 0.42 +1.2
3,620,819 + CCNA_03457 0.42 -0.7
3,620,838 - CCNA_03457 0.45 -1.4
3,620,859 - CCNA_03457 0.48 -0.6
3,620,977 - CCNA_03457 0.63 -1.7
3,621,031 + CCNA_03457 0.70 +0.5
3,621,048 - CCNA_03457 0.72 +0.9
3,621,080 - CCNA_03457 0.76 -0.4
3,621,114 - CCNA_03457 0.80 -0.4
3,621,124 + CCNA_03457 0.82 -0.3
3,621,156 + CCNA_03457 0.86 +1.0
3,621,156 + CCNA_03457 0.86 +0.7
3,621,164 - CCNA_03457 0.87 +0.3
3,621,164 - CCNA_03457 0.87 +0.9
3,621,164 - CCNA_03457 0.87 -0.3
3,621,164 - CCNA_03457 0.87 -1.4
3,621,227 + -0.6
3,621,245 + -0.2
3,621,342 - CCNA_03458 0.36 +1.2
3,621,344 + CCNA_03458 0.37 -0.3
3,621,357 + CCNA_03458 0.40 -0.5
3,621,357 - CCNA_03458 0.40 +0.2
3,621,376 + CCNA_03458 0.43 +0.2
3,621,376 + CCNA_03458 0.43 +0.2
3,621,376 + CCNA_03458 0.43 +1.6
3,621,444 - CCNA_03458 0.57 -2.2
3,621,444 - CCNA_03458 0.57 +0.5
3,621,468 - CCNA_03458 0.62 +0.4
3,621,538 + CCNA_03458 0.77 +0.9
3,621,591 - CCNA_03458 0.88 -0.6
3,621,644 + +0.9
3,621,645 - -0.7
3,621,652 - CCNA_03992 0.14 -1.3
3,621,790 - +0.5
3,621,883 + +1.3
3,621,955 - +0.4
3,621,978 - +1.7
3,622,045 + CCNA_03459 0.12 +1.5
3,622,045 + CCNA_03459 0.12 -0.3
3,622,045 + CCNA_03459 0.12 -0.5
3,622,046 - CCNA_03459 0.12 -0.8
3,622,052 + CCNA_03459 0.13 +2.3
3,622,060 - CCNA_03459 0.13 -0.4
3,622,080 + CCNA_03459 0.14 -0.5
3,622,083 - CCNA_03459 0.14 -2.7
3,622,122 + CCNA_03459 0.17 +0.1
3,622,126 - CCNA_03459 0.17 -1.1
3,622,144 - CCNA_03459 0.18 -1.2
3,622,221 - CCNA_03459 0.22 -0.8
3,622,234 + CCNA_03459 0.23 -0.8
3,622,234 + CCNA_03459 0.23 -0.2
3,622,242 - CCNA_03459 0.23 -1.9
3,622,242 - CCNA_03459 0.23 +1.8
3,622,242 - CCNA_03459 0.23 -0.2
3,622,247 - CCNA_03459 0.24 +0.5
3,622,310 - CCNA_03459 0.27 -0.7
3,622,329 - CCNA_03459 0.28 -0.7
3,622,334 - CCNA_03459 0.29 -3.0
3,622,334 - CCNA_03459 0.29 -0.3
3,622,334 - CCNA_03459 0.29 -1.3
3,622,334 - CCNA_03459 0.29 +0.5
3,622,350 + CCNA_03459 0.29 +1.9
3,622,358 - CCNA_03459 0.30 +0.5
3,622,384 - CCNA_03459 0.31 +0.2
3,622,418 + CCNA_03459 0.33 -2.0
3,622,418 + CCNA_03459 0.33 +0.9
3,622,418 + CCNA_03459 0.33 -0.9
3,622,418 + CCNA_03459 0.33 -0.5
3,622,420 - CCNA_03459 0.33 +0.3
3,622,426 - CCNA_03459 0.34 +0.2
3,622,426 - CCNA_03459 0.34 -0.3
3,622,426 - CCNA_03459 0.34 -1.7
3,622,496 - CCNA_03459 0.38 -0.5
3,622,585 - CCNA_03459 0.43 +0.7
3,622,630 + CCNA_03459 0.45 +2.5
3,622,631 - CCNA_03459 0.45 +2.7
3,622,690 + CCNA_03459 0.49 -1.3
3,622,703 - CCNA_03459 0.49 +0.3

Or see this region's nucleotide sequence