Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03457 and CCNA_03458 overlap by 103 nucleotides CCNA_03458 and CCNA_03992 overlap by 10 nucleotides CCNA_03992 and CCNA_03459 are separated by 110 nucleotides
CCNA_03457: CCNA_03457 - horizontally transferred transmembrane domain (HTTM) protein, at 3,620,488 to 3,621,267
_03457
CCNA_03458: CCNA_03458 - hypothetical protein, at 3,621,165 to 3,621,650
_03458
CCNA_03992: CCNA_03992 - UDP-glucose 6-dehydrogenase-related protein, at 3,621,641 to 3,621,718
_03992
CCNA_03459: CCNA_03459 - methyl-accepting chemotaxis protein, at 3,621,829 to 3,623,598
_03459
Position (kb)
3621
3622 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3620.650 kb on + strand, within CCNA_03457 at 3620.655 kb on + strand, within CCNA_03457 at 3620.655 kb on + strand, within CCNA_03457 at 3620.655 kb on + strand, within CCNA_03457 at 3620.663 kb on - strand, within CCNA_03457 at 3620.672 kb on + strand, within CCNA_03457 at 3620.672 kb on + strand, within CCNA_03457 at 3620.680 kb on - strand, within CCNA_03457 at 3620.680 kb on - strand, within CCNA_03457 at 3620.685 kb on - strand, within CCNA_03457 at 3620.689 kb on + strand, within CCNA_03457 at 3620.689 kb on + strand, within CCNA_03457 at 3620.697 kb on - strand, within CCNA_03457 at 3620.721 kb on + strand, within CCNA_03457 at 3620.723 kb on + strand, within CCNA_03457 at 3620.798 kb on + strand, within CCNA_03457 at 3620.799 kb on - strand, within CCNA_03457 at 3620.814 kb on + strand, within CCNA_03457 at 3620.819 kb on + strand, within CCNA_03457 at 3620.838 kb on - strand, within CCNA_03457 at 3620.859 kb on - strand, within CCNA_03457 at 3620.977 kb on - strand, within CCNA_03457 at 3621.031 kb on + strand, within CCNA_03457 at 3621.048 kb on - strand, within CCNA_03457 at 3621.080 kb on - strand, within CCNA_03457 at 3621.114 kb on - strand, within CCNA_03457 at 3621.124 kb on + strand, within CCNA_03457 at 3621.156 kb on + strand, within CCNA_03457 at 3621.156 kb on + strand, within CCNA_03457 at 3621.164 kb on - strand, within CCNA_03457 at 3621.164 kb on - strand, within CCNA_03457 at 3621.164 kb on - strand, within CCNA_03457 at 3621.164 kb on - strand, within CCNA_03457 at 3621.227 kb on + strand at 3621.245 kb on + strand at 3621.342 kb on - strand, within CCNA_03458 at 3621.344 kb on + strand, within CCNA_03458 at 3621.357 kb on + strand, within CCNA_03458 at 3621.357 kb on - strand, within CCNA_03458 at 3621.376 kb on + strand, within CCNA_03458 at 3621.376 kb on + strand, within CCNA_03458 at 3621.376 kb on + strand, within CCNA_03458 at 3621.444 kb on - strand, within CCNA_03458 at 3621.444 kb on - strand, within CCNA_03458 at 3621.468 kb on - strand, within CCNA_03458 at 3621.538 kb on + strand, within CCNA_03458 at 3621.591 kb on - strand, within CCNA_03458 at 3621.644 kb on + strand at 3621.645 kb on - strand at 3621.652 kb on - strand, within CCNA_03992 at 3621.790 kb on - strand at 3621.883 kb on + strand at 3621.955 kb on - strand at 3621.978 kb on - strand at 3622.045 kb on + strand, within CCNA_03459 at 3622.045 kb on + strand, within CCNA_03459 at 3622.045 kb on + strand, within CCNA_03459 at 3622.046 kb on - strand, within CCNA_03459 at 3622.052 kb on + strand, within CCNA_03459 at 3622.060 kb on - strand, within CCNA_03459 at 3622.080 kb on + strand, within CCNA_03459 at 3622.083 kb on - strand, within CCNA_03459 at 3622.122 kb on + strand, within CCNA_03459 at 3622.126 kb on - strand, within CCNA_03459 at 3622.144 kb on - strand, within CCNA_03459 at 3622.221 kb on - strand, within CCNA_03459 at 3622.234 kb on + strand, within CCNA_03459 at 3622.234 kb on + strand, within CCNA_03459 at 3622.242 kb on - strand, within CCNA_03459 at 3622.242 kb on - strand, within CCNA_03459 at 3622.242 kb on - strand, within CCNA_03459 at 3622.247 kb on - strand, within CCNA_03459 at 3622.310 kb on - strand, within CCNA_03459 at 3622.329 kb on - strand, within CCNA_03459 at 3622.334 kb on - strand, within CCNA_03459 at 3622.334 kb on - strand, within CCNA_03459 at 3622.334 kb on - strand, within CCNA_03459 at 3622.334 kb on - strand, within CCNA_03459 at 3622.350 kb on + strand, within CCNA_03459 at 3622.358 kb on - strand, within CCNA_03459 at 3622.384 kb on - strand, within CCNA_03459 at 3622.418 kb on + strand, within CCNA_03459 at 3622.418 kb on + strand, within CCNA_03459 at 3622.418 kb on + strand, within CCNA_03459 at 3622.418 kb on + strand, within CCNA_03459 at 3622.420 kb on - strand, within CCNA_03459 at 3622.426 kb on - strand, within CCNA_03459 at 3622.426 kb on - strand, within CCNA_03459 at 3622.426 kb on - strand, within CCNA_03459 at 3622.496 kb on - strand, within CCNA_03459 at 3622.585 kb on - strand, within CCNA_03459 at 3622.630 kb on + strand, within CCNA_03459 at 3622.631 kb on - strand, within CCNA_03459 at 3622.690 kb on + strand, within CCNA_03459 at 3622.703 kb on - strand, within CCNA_03459
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,620,650 + CCNA_03457 0.21 +1.2 3,620,655 + CCNA_03457 0.21 +1.2 3,620,655 + CCNA_03457 0.21 +1.2 3,620,655 + CCNA_03457 0.21 +0.5 3,620,663 - CCNA_03457 0.22 -0.5 3,620,672 + CCNA_03457 0.24 -1.4 3,620,672 + CCNA_03457 0.24 -0.6 3,620,680 - CCNA_03457 0.25 -1.0 3,620,680 - CCNA_03457 0.25 -0.5 3,620,685 - CCNA_03457 0.25 -0.3 3,620,689 + CCNA_03457 0.26 -0.4 3,620,689 + CCNA_03457 0.26 +2.8 3,620,697 - CCNA_03457 0.27 -2.5 3,620,721 + CCNA_03457 0.30 -1.9 3,620,723 + CCNA_03457 0.30 +4.1 3,620,798 + CCNA_03457 0.40 -1.0 3,620,799 - CCNA_03457 0.40 -1.4 3,620,814 + CCNA_03457 0.42 +1.2 3,620,819 + CCNA_03457 0.42 -0.7 3,620,838 - CCNA_03457 0.45 -1.4 3,620,859 - CCNA_03457 0.48 -0.6 3,620,977 - CCNA_03457 0.63 -1.7 3,621,031 + CCNA_03457 0.70 +0.5 3,621,048 - CCNA_03457 0.72 +0.9 3,621,080 - CCNA_03457 0.76 -0.4 3,621,114 - CCNA_03457 0.80 -0.4 3,621,124 + CCNA_03457 0.82 -0.3 3,621,156 + CCNA_03457 0.86 +1.0 3,621,156 + CCNA_03457 0.86 +0.7 3,621,164 - CCNA_03457 0.87 +0.3 3,621,164 - CCNA_03457 0.87 +0.9 3,621,164 - CCNA_03457 0.87 -0.3 3,621,164 - CCNA_03457 0.87 -1.4 3,621,227 + -0.6 3,621,245 + -0.2 3,621,342 - CCNA_03458 0.36 +1.2 3,621,344 + CCNA_03458 0.37 -0.3 3,621,357 + CCNA_03458 0.40 -0.5 3,621,357 - CCNA_03458 0.40 +0.2 3,621,376 + CCNA_03458 0.43 +0.2 3,621,376 + CCNA_03458 0.43 +0.2 3,621,376 + CCNA_03458 0.43 +1.6 3,621,444 - CCNA_03458 0.57 -2.2 3,621,444 - CCNA_03458 0.57 +0.5 3,621,468 - CCNA_03458 0.62 +0.4 3,621,538 + CCNA_03458 0.77 +0.9 3,621,591 - CCNA_03458 0.88 -0.6 3,621,644 + +0.9 3,621,645 - -0.7 3,621,652 - CCNA_03992 0.14 -1.3 3,621,790 - +0.5 3,621,883 + +1.3 3,621,955 - +0.4 3,621,978 - +1.7 3,622,045 + CCNA_03459 0.12 +1.5 3,622,045 + CCNA_03459 0.12 -0.3 3,622,045 + CCNA_03459 0.12 -0.5 3,622,046 - CCNA_03459 0.12 -0.8 3,622,052 + CCNA_03459 0.13 +2.3 3,622,060 - CCNA_03459 0.13 -0.4 3,622,080 + CCNA_03459 0.14 -0.5 3,622,083 - CCNA_03459 0.14 -2.7 3,622,122 + CCNA_03459 0.17 +0.1 3,622,126 - CCNA_03459 0.17 -1.1 3,622,144 - CCNA_03459 0.18 -1.2 3,622,221 - CCNA_03459 0.22 -0.8 3,622,234 + CCNA_03459 0.23 -0.8 3,622,234 + CCNA_03459 0.23 -0.2 3,622,242 - CCNA_03459 0.23 -1.9 3,622,242 - CCNA_03459 0.23 +1.8 3,622,242 - CCNA_03459 0.23 -0.2 3,622,247 - CCNA_03459 0.24 +0.5 3,622,310 - CCNA_03459 0.27 -0.7 3,622,329 - CCNA_03459 0.28 -0.7 3,622,334 - CCNA_03459 0.29 -3.0 3,622,334 - CCNA_03459 0.29 -0.3 3,622,334 - CCNA_03459 0.29 -1.3 3,622,334 - CCNA_03459 0.29 +0.5 3,622,350 + CCNA_03459 0.29 +1.9 3,622,358 - CCNA_03459 0.30 +0.5 3,622,384 - CCNA_03459 0.31 +0.2 3,622,418 + CCNA_03459 0.33 -2.0 3,622,418 + CCNA_03459 0.33 +0.9 3,622,418 + CCNA_03459 0.33 -0.9 3,622,418 + CCNA_03459 0.33 -0.5 3,622,420 - CCNA_03459 0.33 +0.3 3,622,426 - CCNA_03459 0.34 +0.2 3,622,426 - CCNA_03459 0.34 -0.3 3,622,426 - CCNA_03459 0.34 -1.7 3,622,496 - CCNA_03459 0.38 -0.5 3,622,585 - CCNA_03459 0.43 +0.7 3,622,630 + CCNA_03459 0.45 +2.5 3,622,631 - CCNA_03459 0.45 +2.7 3,622,690 + CCNA_03459 0.49 -1.3 3,622,703 - CCNA_03459 0.49 +0.3
Or see this region's nucleotide sequence