Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02583 and CCNA_03970 are separated by 105 nucleotides CCNA_03970 and CCNA_03901 are separated by 355 nucleotides CCNA_03901 and CCNA_02586 are separated by 66 nucleotides
CCNA_02583: CCNA_02583 - phosphoribosylformylglycinamidine synthase I, at 2,732,389 to 2,733,051
_02583
CCNA_03970: CCNA_03970 - hypothetical protein, at 2,733,157 to 2,733,348
_03970
CCNA_03901: CCNA_03901 - hypothetical protein, at 2,733,704 to 2,734,027
_03901
CCNA_02586: CCNA_02586 - phosphoribosylformylglycinamidine synthase II, at 2,734,094 to 2,736,313
_02586
Position (kb)
2733
2734
2735 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2732.755 kb on + strand, within CCNA_02583 at 2732.808 kb on - strand, within CCNA_02583 at 2732.832 kb on - strand, within CCNA_02583 at 2732.853 kb on + strand, within CCNA_02583 at 2732.856 kb on - strand, within CCNA_02583 at 2732.872 kb on + strand, within CCNA_02583 at 2732.881 kb on + strand, within CCNA_02583 at 2732.889 kb on - strand, within CCNA_02583 at 2733.003 kb on - strand at 2733.024 kb on + strand at 2733.027 kb on - strand at 2733.075 kb on + strand at 2733.104 kb on + strand at 2733.169 kb on + strand at 2733.169 kb on + strand at 2733.177 kb on - strand, within CCNA_03970 at 2733.225 kb on - strand at 2733.252 kb on + strand, within CCNA_03970 at 2733.301 kb on - strand, within CCNA_03970 at 2733.329 kb on + strand at 2733.335 kb on - strand at 2733.337 kb on - strand at 2733.359 kb on - strand at 2733.362 kb on + strand at 2733.388 kb on + strand at 2733.388 kb on + strand at 2733.398 kb on + strand at 2733.403 kb on + strand at 2733.403 kb on + strand at 2733.422 kb on + strand at 2733.422 kb on + strand at 2733.430 kb on - strand at 2733.503 kb on + strand at 2733.511 kb on - strand at 2733.524 kb on - strand at 2733.533 kb on + strand at 2733.537 kb on - strand at 2733.558 kb on + strand at 2733.585 kb on - strand at 2733.592 kb on + strand at 2733.592 kb on + strand at 2733.600 kb on - strand at 2733.600 kb on - strand at 2733.627 kb on + strand at 2733.635 kb on - strand at 2733.699 kb on - strand at 2733.749 kb on + strand, within CCNA_03901 at 2733.764 kb on - strand, within CCNA_03901 at 2733.775 kb on + strand, within CCNA_03901 at 2733.782 kb on + strand, within CCNA_03901 at 2733.826 kb on + strand, within CCNA_03901 at 2733.834 kb on - strand, within CCNA_03901 at 2733.896 kb on + strand, within CCNA_03901 at 2733.922 kb on + strand, within CCNA_03901 at 2733.930 kb on - strand, within CCNA_03901 at 2733.966 kb on - strand, within CCNA_03901 at 2733.972 kb on - strand, within CCNA_03901 at 2734.033 kb on - strand at 2734.091 kb on + strand at 2734.093 kb on + strand at 2734.093 kb on + strand at 2734.099 kb on - strand at 2734.099 kb on - strand at 2734.123 kb on + strand at 2734.123 kb on + strand at 2734.123 kb on + strand at 2734.131 kb on - strand at 2734.178 kb on + strand at 2734.186 kb on - strand at 2734.189 kb on + strand at 2734.219 kb on + strand at 2734.242 kb on - strand at 2734.317 kb on + strand, within CCNA_02586 at 2734.367 kb on + strand, within CCNA_02586 at 2734.404 kb on - strand, within CCNA_02586 at 2734.425 kb on - strand, within CCNA_02586 at 2734.438 kb on - strand, within CCNA_02586 at 2734.453 kb on + strand, within CCNA_02586 at 2734.576 kb on + strand, within CCNA_02586 at 2734.578 kb on + strand, within CCNA_02586 at 2734.622 kb on + strand, within CCNA_02586 at 2734.630 kb on - strand, within CCNA_02586 at 2734.664 kb on - strand, within CCNA_02586 at 2734.666 kb on + strand at 2734.666 kb on + strand, within CCNA_02586 at 2734.666 kb on + strand, within CCNA_02586 at 2734.666 kb on + strand, within CCNA_02586 at 2734.666 kb on + strand, within CCNA_02586 at 2734.698 kb on + strand, within CCNA_02586 at 2734.807 kb on + strand, within CCNA_02586 at 2734.815 kb on + strand, within CCNA_02586 at 2734.847 kb on + strand, within CCNA_02586 at 2734.863 kb on + strand, within CCNA_02586 at 2734.898 kb on + strand, within CCNA_02586 at 2734.981 kb on + strand, within CCNA_02586 at 2734.983 kb on + strand, within CCNA_02586
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,732,755 + CCNA_02583 0.55 -1.7 2,732,808 - CCNA_02583 0.63 +1.5 2,732,832 - CCNA_02583 0.67 -1.1 2,732,853 + CCNA_02583 0.70 -1.5 2,732,856 - CCNA_02583 0.70 -1.5 2,732,872 + CCNA_02583 0.73 +1.1 2,732,881 + CCNA_02583 0.74 -0.7 2,732,889 - CCNA_02583 0.75 -1.5 2,733,003 - -0.7 2,733,024 + -0.2 2,733,027 - -1.2 2,733,075 + -0.0 2,733,104 + +0.0 2,733,169 + -0.2 2,733,169 + -0.3 2,733,177 - CCNA_03970 0.10 +0.9 2,733,225 - +2.5 2,733,252 + CCNA_03970 0.49 +0.3 2,733,301 - CCNA_03970 0.75 -0.6 2,733,329 + -0.8 2,733,335 - -0.1 2,733,337 - -0.1 2,733,359 - -1.0 2,733,362 + -2.0 2,733,388 + -0.7 2,733,388 + -0.0 2,733,398 + -1.2 2,733,403 + +0.2 2,733,403 + +0.5 2,733,422 + -0.3 2,733,422 + +0.7 2,733,430 - -1.1 2,733,503 + +1.9 2,733,511 - +0.5 2,733,524 - -1.3 2,733,533 + -2.1 2,733,537 - -1.2 2,733,558 + +1.3 2,733,585 - +1.8 2,733,592 + -1.1 2,733,592 + -0.8 2,733,600 - +1.9 2,733,600 - -0.5 2,733,627 + -0.3 2,733,635 - +1.1 2,733,699 - +0.2 2,733,749 + CCNA_03901 0.14 -2.8 2,733,764 - CCNA_03901 0.19 +0.9 2,733,775 + CCNA_03901 0.22 -1.0 2,733,782 + CCNA_03901 0.24 +0.1 2,733,826 + CCNA_03901 0.38 +0.7 2,733,834 - CCNA_03901 0.40 -2.5 2,733,896 + CCNA_03901 0.59 -0.6 2,733,922 + CCNA_03901 0.67 -1.8 2,733,930 - CCNA_03901 0.70 -0.4 2,733,966 - CCNA_03901 0.81 +0.2 2,733,972 - CCNA_03901 0.83 -0.6 2,734,033 - +0.2 2,734,091 + +1.0 2,734,093 + -0.2 2,734,093 + +0.7 2,734,099 - +0.3 2,734,099 - -0.7 2,734,123 + +0.9 2,734,123 + +1.3 2,734,123 + -1.0 2,734,131 - -0.9 2,734,178 + -0.5 2,734,186 - -0.9 2,734,189 + -0.2 2,734,219 + -0.7 2,734,242 - -0.1 2,734,317 + CCNA_02586 0.10 +0.7 2,734,367 + CCNA_02586 0.12 +0.3 2,734,404 - CCNA_02586 0.14 -0.3 2,734,425 - CCNA_02586 0.15 +0.7 2,734,438 - CCNA_02586 0.15 -0.4 2,734,453 + CCNA_02586 0.16 +0.2 2,734,576 + CCNA_02586 0.22 -0.1 2,734,578 + CCNA_02586 0.22 +0.2 2,734,622 + CCNA_02586 0.24 -0.6 2,734,630 - CCNA_02586 0.24 +1.9 2,734,664 - CCNA_02586 0.26 +1.8 2,734,666 + +1.5 2,734,666 + CCNA_02586 0.26 +0.6 2,734,666 + CCNA_02586 0.26 +1.8 2,734,666 + CCNA_02586 0.26 -1.0 2,734,666 + CCNA_02586 0.26 +1.3 2,734,698 + CCNA_02586 0.27 -1.2 2,734,807 + CCNA_02586 0.32 -1.5 2,734,815 + CCNA_02586 0.32 +0.9 2,734,847 + CCNA_02586 0.34 +0.7 2,734,863 + CCNA_02586 0.35 -1.7 2,734,898 + CCNA_02586 0.36 +0.3 2,734,981 + CCNA_02586 0.40 +2.9 2,734,983 + CCNA_02586 0.40 -1.2
Or see this region's nucleotide sequence