Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03878

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03876 and CCNA_03877 are separated by 258 nucleotidesCCNA_03877 and CCNA_03878 overlap by 52 nucleotidesCCNA_03878 and CCNA_03879 overlap by 4 nucleotides CCNA_03876: CCNA_03876 - transcription termination factor rho, at 4,038,433 to 4,039,866 _03876 CCNA_03877: CCNA_03877 - conserved hypothetical membrane spanning protein, at 4,040,125 to 4,040,640 _03877 CCNA_03878: CCNA_03878 - ferrochelatase, at 4,040,589 to 4,041,632 _03878 CCNA_03879: CCNA_03879 - uroporphyrinogen decarboxylase, at 4,041,629 to 4,042,684 _03879 Position (kb) 4040 4041 4042Strain fitness (log2 ratio) -1 0 1at 4039.609 kb on - strand, within CCNA_03876at 4039.874 kb on - strandat 4039.881 kb on - strandat 4039.900 kb on - strandat 4039.961 kb on - strandat 4039.967 kb on + strandat 4040.017 kb on + strandat 4040.045 kb on + strandat 4040.116 kb on + strandat 4040.138 kb on - strandat 4040.147 kb on - strandat 4040.606 kb on - strandat 4040.625 kb on - strandat 4040.625 kb on - strandat 4040.640 kb on - strandat 4040.640 kb on - strandat 4040.664 kb on - strandat 4040.706 kb on - strand, within CCNA_03878at 4041.640 kb on + strandat 4041.640 kb on + strandat 4041.640 kb on + strandat 4041.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,039,609 - CCNA_03876 0.82 +0.5
4,039,874 - -0.2
4,039,881 - -0.3
4,039,900 - -0.6
4,039,961 - +0.9
4,039,967 + +0.2
4,040,017 + -0.5
4,040,045 + -0.1
4,040,116 + +0.1
4,040,138 - -0.3
4,040,147 - +0.5
4,040,606 - +0.8
4,040,625 - +0.4
4,040,625 - -0.5
4,040,640 - -0.7
4,040,640 - -1.5
4,040,664 - +0.1
4,040,706 - CCNA_03878 0.11 -1.5
4,041,640 + -0.3
4,041,640 + +0.8
4,041,640 + -0.2
4,041,657 + -0.5

Or see this region's nucleotide sequence