Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03862 and CCNA_03863 are separated by 6 nucleotides CCNA_03863 and CCNA_03864 are separated by 253 nucleotides CCNA_03864 and CCNA_03865 are separated by 139 nucleotides
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
CCNA_03864: CCNA_03864 - hypothetical protein, at 4,025,489 to 4,026,016
_03864
CCNA_03865: CCNA_03865 - leucyl-tRNA synthetase, at 4,026,156 to 4,028,741
_03865
Position (kb)
4025
4026
4027 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4024.806 kb on - strand at 4024.978 kb on - strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.204 kb on - strand at 4025.269 kb on - strand at 4025.281 kb on - strand at 4025.303 kb on + strand at 4025.311 kb on - strand at 4025.428 kb on + strand at 4025.435 kb on - strand at 4025.441 kb on - strand at 4025.494 kb on - strand at 4025.499 kb on + strand at 4025.501 kb on + strand at 4025.505 kb on - strand at 4025.507 kb on - strand at 4025.507 kb on - strand at 4025.507 kb on - strand at 4025.509 kb on - strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.520 kb on + strand at 4025.525 kb on + strand at 4025.528 kb on - strand at 4025.607 kb on - strand, within CCNA_03864 at 4025.620 kb on + strand, within CCNA_03864 at 4025.687 kb on + strand, within CCNA_03864 at 4025.698 kb on + strand, within CCNA_03864 at 4025.723 kb on + strand, within CCNA_03864 at 4025.740 kb on + strand, within CCNA_03864 at 4025.747 kb on + strand, within CCNA_03864 at 4025.752 kb on + strand, within CCNA_03864 at 4025.755 kb on - strand, within CCNA_03864 at 4025.755 kb on - strand, within CCNA_03864 at 4025.765 kb on - strand, within CCNA_03864 at 4025.809 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.824 kb on + strand, within CCNA_03864 at 4025.830 kb on + strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand, within CCNA_03864 at 4025.832 kb on - strand at 4025.832 kb on - strand, within CCNA_03864 at 4025.837 kb on + strand, within CCNA_03864 at 4025.837 kb on + strand, within CCNA_03864 at 4025.845 kb on - strand, within CCNA_03864 at 4025.851 kb on - strand, within CCNA_03864 at 4025.865 kb on + strand, within CCNA_03864 at 4025.871 kb on + strand, within CCNA_03864 at 4025.886 kb on + strand, within CCNA_03864 at 4025.895 kb on - strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.904 kb on - strand, within CCNA_03864 at 4025.939 kb on + strand, within CCNA_03864 at 4025.947 kb on - strand, within CCNA_03864 at 4025.960 kb on - strand, within CCNA_03864 at 4025.996 kb on - strand at 4026.011 kb on + strand at 4026.032 kb on - strand at 4026.084 kb on - strand at 4026.084 kb on - strand at 4026.084 kb on - strand at 4026.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,024,806 - +0.5 4,024,978 - CCNA_03863 0.37 -0.2 4,025,150 + CCNA_03863 0.79 +0.0 4,025,150 + CCNA_03863 0.79 -1.8 4,025,150 + CCNA_03863 0.79 +0.9 4,025,158 - CCNA_03863 0.81 -0.3 4,025,158 - CCNA_03863 0.81 +0.8 4,025,158 - CCNA_03863 0.81 +0.3 4,025,204 - +0.6 4,025,269 - -1.2 4,025,281 - +0.2 4,025,303 + -2.4 4,025,311 - -0.3 4,025,428 + -0.5 4,025,435 - -0.2 4,025,441 - +0.1 4,025,494 - -1.6 4,025,499 + -0.8 4,025,501 + -1.0 4,025,505 - -0.5 4,025,507 - +3.0 4,025,507 - -1.5 4,025,507 - -1.2 4,025,509 - -0.3 4,025,520 + +0.0 4,025,520 + -2.3 4,025,520 + -1.9 4,025,520 + -0.9 4,025,520 + -0.3 4,025,520 + -2.1 4,025,520 + -1.6 4,025,520 + +0.6 4,025,520 + -0.4 4,025,520 + -1.0 4,025,525 + +3.5 4,025,528 - -2.3 4,025,607 - CCNA_03864 0.22 -1.3 4,025,620 + CCNA_03864 0.25 -0.6 4,025,687 + CCNA_03864 0.38 -0.5 4,025,698 + CCNA_03864 0.40 -1.9 4,025,723 + CCNA_03864 0.44 -2.3 4,025,740 + CCNA_03864 0.48 -1.4 4,025,747 + CCNA_03864 0.49 -2.2 4,025,752 + CCNA_03864 0.50 -2.3 4,025,755 - CCNA_03864 0.50 -1.4 4,025,755 - CCNA_03864 0.50 +1.5 4,025,765 - CCNA_03864 0.52 -0.1 4,025,809 + CCNA_03864 0.61 -1.8 4,025,824 + CCNA_03864 0.63 -3.1 4,025,824 + CCNA_03864 0.63 -1.1 4,025,824 + CCNA_03864 0.63 -2.0 4,025,824 + CCNA_03864 0.63 +0.2 4,025,824 + CCNA_03864 0.63 -0.1 4,025,824 + CCNA_03864 0.63 -1.1 4,025,824 + CCNA_03864 0.63 -2.8 4,025,824 + CCNA_03864 0.63 -0.4 4,025,824 + CCNA_03864 0.63 -2.2 4,025,824 + CCNA_03864 0.63 -0.9 4,025,824 + CCNA_03864 0.63 -0.7 4,025,830 + CCNA_03864 0.65 -2.3 4,025,832 - CCNA_03864 0.65 -0.3 4,025,832 - CCNA_03864 0.65 -3.2 4,025,832 - CCNA_03864 0.65 -2.0 4,025,832 - CCNA_03864 0.65 -1.6 4,025,832 - +0.5 4,025,832 - CCNA_03864 0.65 -2.8 4,025,837 + CCNA_03864 0.66 -0.5 4,025,837 + CCNA_03864 0.66 -0.8 4,025,845 - CCNA_03864 0.67 -2.1 4,025,851 - CCNA_03864 0.69 -2.4 4,025,865 + CCNA_03864 0.71 -2.3 4,025,871 + CCNA_03864 0.72 -0.5 4,025,886 + CCNA_03864 0.75 -0.7 4,025,895 - CCNA_03864 0.77 -2.3 4,025,896 + CCNA_03864 0.77 -3.4 4,025,896 + CCNA_03864 0.77 +1.0 4,025,896 + CCNA_03864 0.77 -2.1 4,025,896 + CCNA_03864 0.77 -0.3 4,025,896 + CCNA_03864 0.77 -1.9 4,025,904 - CCNA_03864 0.79 -1.6 4,025,904 - CCNA_03864 0.79 -2.7 4,025,904 - CCNA_03864 0.79 -1.0 4,025,904 - CCNA_03864 0.79 -1.0 4,025,904 - CCNA_03864 0.79 -4.1 4,025,939 + CCNA_03864 0.85 -2.4 4,025,947 - CCNA_03864 0.87 -0.7 4,025,960 - CCNA_03864 0.89 -2.5 4,025,996 - -1.0 4,026,011 + +1.0 4,026,032 - +0.5 4,026,084 - +0.5 4,026,084 - +1.6 4,026,084 - +2.8 4,026,094 + +1.5
Or see this region's nucleotide sequence