Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03826

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03824 and CCNA_03825 are separated by 6 nucleotidesCCNA_03825 and CCNA_03826 overlap by 4 nucleotidesCCNA_03826 and CCNA_03827 are separated by 149 nucleotides CCNA_03824: CCNA_03824 - 2-polyprenylphenol 6-hydroxylase accessory protein UbiB, at 3,989,897 to 3,991,405 _03824 CCNA_03825: CCNA_03825 - hypothetical protein, at 3,991,412 to 3,991,774 _03825 CCNA_03826: CCNA_03826 - hypothetical protein, at 3,991,771 to 3,992,325 _03826 CCNA_03827: CCNA_03827 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 3,992,475 to 3,993,671 _03827 Position (kb) 3991 3992 3993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3990.819 kb on - strandat 3990.877 kb on - strand, within CCNA_03824at 3990.946 kb on + strand, within CCNA_03824at 3990.963 kb on + strand, within CCNA_03824at 3990.963 kb on + strand, within CCNA_03824at 3991.063 kb on + strand, within CCNA_03824at 3991.071 kb on - strand, within CCNA_03824at 3991.076 kb on - strand, within CCNA_03824at 3991.153 kb on + strand, within CCNA_03824at 3991.155 kb on + strand, within CCNA_03824at 3991.205 kb on - strand, within CCNA_03824at 3991.215 kb on - strand, within CCNA_03824at 3991.318 kb on + strandat 3991.318 kb on + strandat 3991.326 kb on - strandat 3991.326 kb on - strandat 3991.341 kb on + strandat 3991.342 kb on - strandat 3991.394 kb on - strandat 3991.399 kb on - strandat 3991.489 kb on - strand, within CCNA_03825at 3991.515 kb on + strand, within CCNA_03825at 3991.515 kb on + strand, within CCNA_03825at 3991.522 kb on + strand, within CCNA_03825at 3991.552 kb on - strand, within CCNA_03825at 3991.567 kb on + strand, within CCNA_03825at 3991.609 kb on - strand, within CCNA_03825at 3991.611 kb on + strand, within CCNA_03825at 3991.614 kb on - strand, within CCNA_03825at 3991.614 kb on - strand, within CCNA_03825at 3991.619 kb on - strand, within CCNA_03825at 3991.619 kb on - strand, within CCNA_03825at 3991.656 kb on + strand, within CCNA_03825at 3991.664 kb on - strand, within CCNA_03825at 3991.696 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strandat 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.722 kb on + strand, within CCNA_03825at 3991.768 kb on + strandat 3991.775 kb on - strandat 3991.806 kb on - strandat 3991.833 kb on + strand, within CCNA_03826at 3991.847 kb on - strand, within CCNA_03826at 3991.858 kb on + strand, within CCNA_03826at 3991.858 kb on + strand, within CCNA_03826at 3991.858 kb on + strand, within CCNA_03826at 3991.863 kb on + strand, within CCNA_03826at 3991.866 kb on - strand, within CCNA_03826at 3991.868 kb on + strand, within CCNA_03826at 3991.868 kb on + strand, within CCNA_03826at 3991.868 kb on + strand, within CCNA_03826at 3991.871 kb on - strand, within CCNA_03826at 3991.876 kb on - strand, within CCNA_03826at 3991.876 kb on - strand, within CCNA_03826at 3991.915 kb on + strand, within CCNA_03826at 3991.936 kb on + strand, within CCNA_03826at 3992.111 kb on + strand, within CCNA_03826at 3992.119 kb on - strand, within CCNA_03826at 3992.167 kb on - strand, within CCNA_03826at 3992.169 kb on + strand, within CCNA_03826at 3992.246 kb on - strand, within CCNA_03826at 3992.250 kb on + strand, within CCNA_03826at 3992.287 kb on + strandat 3992.411 kb on + strandat 3992.411 kb on + strandat 3992.419 kb on - strandat 3992.419 kb on - strandat 3992.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,990,819 - +1.2
3,990,877 - CCNA_03824 0.65 -0.2
3,990,946 + CCNA_03824 0.70 +1.5
3,990,963 + CCNA_03824 0.71 +1.4
3,990,963 + CCNA_03824 0.71 -0.2
3,991,063 + CCNA_03824 0.77 +1.4
3,991,071 - CCNA_03824 0.78 +2.7
3,991,076 - CCNA_03824 0.78 +1.9
3,991,153 + CCNA_03824 0.83 +0.1
3,991,155 + CCNA_03824 0.83 +0.3
3,991,205 - CCNA_03824 0.87 +2.2
3,991,215 - CCNA_03824 0.87 +1.2
3,991,318 + -1.7
3,991,318 + +1.2
3,991,326 - -0.7
3,991,326 - +0.6
3,991,341 + -0.3
3,991,342 - -1.7
3,991,394 - -1.5
3,991,399 - -1.1
3,991,489 - CCNA_03825 0.21 +1.3
3,991,515 + CCNA_03825 0.28 -1.5
3,991,515 + CCNA_03825 0.28 +0.7
3,991,522 + CCNA_03825 0.30 +0.3
3,991,552 - CCNA_03825 0.39 +3.2
3,991,567 + CCNA_03825 0.43 -1.3
3,991,609 - CCNA_03825 0.54 -3.1
3,991,611 + CCNA_03825 0.55 -1.9
3,991,614 - CCNA_03825 0.56 -1.2
3,991,614 - CCNA_03825 0.56 -1.0
3,991,619 - CCNA_03825 0.57 -1.1
3,991,619 - CCNA_03825 0.57 +1.9
3,991,656 + CCNA_03825 0.67 -0.2
3,991,664 - CCNA_03825 0.69 -0.0
3,991,696 + CCNA_03825 0.78 -0.5
3,991,711 + CCNA_03825 0.82 +0.2
3,991,711 + CCNA_03825 0.82 -0.4
3,991,711 + CCNA_03825 0.82 -1.0
3,991,711 + CCNA_03825 0.82 +0.6
3,991,711 + CCNA_03825 0.82 -2.0
3,991,711 + CCNA_03825 0.82 -0.1
3,991,711 + CCNA_03825 0.82 -1.4
3,991,711 + CCNA_03825 0.82 +0.7
3,991,711 + CCNA_03825 0.82 -0.4
3,991,719 - CCNA_03825 0.85 +1.0
3,991,719 - CCNA_03825 0.85 -0.6
3,991,719 - CCNA_03825 0.85 -0.6
3,991,719 - +0.5
3,991,719 - CCNA_03825 0.85 -1.6
3,991,719 - CCNA_03825 0.85 -1.5
3,991,719 - CCNA_03825 0.85 -0.7
3,991,719 - CCNA_03825 0.85 +0.3
3,991,722 + CCNA_03825 0.85 -1.7
3,991,768 + -0.4
3,991,775 - -0.9
3,991,806 - +1.5
3,991,833 + CCNA_03826 0.11 +2.0
3,991,847 - CCNA_03826 0.14 +1.1
3,991,858 + CCNA_03826 0.16 -1.2
3,991,858 + CCNA_03826 0.16 +0.9
3,991,858 + CCNA_03826 0.16 -0.8
3,991,863 + CCNA_03826 0.17 +0.2
3,991,866 - CCNA_03826 0.17 -1.1
3,991,868 + CCNA_03826 0.17 -1.4
3,991,868 + CCNA_03826 0.17 -1.3
3,991,868 + CCNA_03826 0.17 -1.5
3,991,871 - CCNA_03826 0.18 +0.0
3,991,876 - CCNA_03826 0.19 -2.0
3,991,876 - CCNA_03826 0.19 -1.2
3,991,915 + CCNA_03826 0.26 -1.3
3,991,936 + CCNA_03826 0.30 -0.1
3,992,111 + CCNA_03826 0.61 -2.3
3,992,119 - CCNA_03826 0.63 -0.9
3,992,167 - CCNA_03826 0.71 -0.4
3,992,169 + CCNA_03826 0.72 -1.4
3,992,246 - CCNA_03826 0.86 +0.2
3,992,250 + CCNA_03826 0.86 -1.3
3,992,287 + -2.3
3,992,411 + +1.5
3,992,411 + -0.4
3,992,419 - -1.6
3,992,419 - +2.2
3,992,436 + +1.8

Or see this region's nucleotide sequence