Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03732 and CCNA_03733 overlap by 17 nucleotides CCNA_03733 and CCNA_03734 are separated by 94 nucleotides
CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552
_03732
CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846
_03733
CCNA_03734: CCNA_03734 - glutamine-dependent NAD synthetase, at 3,901,941 to 3,903,977
_03734
Position (kb)
3900
3901
3902 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3899.578 kb on + strand, within CCNA_03732 at 3900.232 kb on - strand, within CCNA_03732 at 3900.542 kb on - strand at 3900.581 kb on + strand at 3900.589 kb on - strand at 3900.589 kb on - strand at 3900.591 kb on + strand at 3900.603 kb on - strand at 3900.621 kb on + strand at 3900.629 kb on - strand at 3900.653 kb on + strand at 3900.659 kb on + strand at 3900.682 kb on + strand, within CCNA_03733 at 3900.689 kb on + strand, within CCNA_03733 at 3900.691 kb on - strand, within CCNA_03733 at 3900.715 kb on + strand, within CCNA_03733 at 3900.723 kb on - strand, within CCNA_03733 at 3900.735 kb on + strand, within CCNA_03733 at 3900.781 kb on + strand, within CCNA_03733 at 3900.789 kb on - strand, within CCNA_03733 at 3900.794 kb on + strand, within CCNA_03733 at 3900.803 kb on - strand, within CCNA_03733 at 3900.829 kb on - strand, within CCNA_03733 at 3900.854 kb on + strand, within CCNA_03733 at 3900.862 kb on - strand, within CCNA_03733 at 3900.862 kb on - strand, within CCNA_03733 at 3900.872 kb on - strand, within CCNA_03733 at 3900.896 kb on - strand, within CCNA_03733 at 3900.932 kb on + strand, within CCNA_03733 at 3900.940 kb on - strand, within CCNA_03733 at 3900.970 kb on - strand, within CCNA_03733 at 3900.971 kb on + strand, within CCNA_03733 at 3900.979 kb on - strand, within CCNA_03733 at 3900.980 kb on - strand, within CCNA_03733 at 3901.043 kb on + strand, within CCNA_03733 at 3901.043 kb on + strand, within CCNA_03733 at 3901.070 kb on + strand, within CCNA_03733 at 3901.082 kb on + strand, within CCNA_03733 at 3901.092 kb on + strand, within CCNA_03733 at 3901.092 kb on - strand, within CCNA_03733 at 3901.110 kb on + strand, within CCNA_03733 at 3901.183 kb on + strand, within CCNA_03733 at 3901.189 kb on - strand, within CCNA_03733 at 3901.191 kb on - strand, within CCNA_03733 at 3901.215 kb on - strand, within CCNA_03733 at 3901.215 kb on - strand, within CCNA_03733 at 3901.215 kb on - strand, within CCNA_03733 at 3901.273 kb on - strand, within CCNA_03733 at 3901.299 kb on + strand, within CCNA_03733 at 3901.309 kb on + strand, within CCNA_03733 at 3901.389 kb on - strand, within CCNA_03733 at 3901.428 kb on + strand, within CCNA_03733 at 3901.428 kb on + strand, within CCNA_03733 at 3901.428 kb on + strand, within CCNA_03733 at 3901.434 kb on - strand at 3901.436 kb on - strand, within CCNA_03733 at 3901.436 kb on - strand, within CCNA_03733 at 3901.436 kb on - strand, within CCNA_03733 at 3901.455 kb on - strand, within CCNA_03733 at 3901.487 kb on - strand, within CCNA_03733 at 3901.504 kb on - strand, within CCNA_03733 at 3901.583 kb on + strand, within CCNA_03733 at 3901.589 kb on + strand, within CCNA_03733 at 3901.591 kb on - strand, within CCNA_03733 at 3901.627 kb on + strand, within CCNA_03733 at 3901.650 kb on + strand, within CCNA_03733 at 3901.653 kb on - strand, within CCNA_03733 at 3901.701 kb on - strand, within CCNA_03733 at 3901.702 kb on - strand, within CCNA_03733 at 3901.720 kb on - strand at 3901.734 kb on - strand at 3901.760 kb on - strand at 3901.791 kb on + strand at 3901.799 kb on - strand at 3901.799 kb on - strand at 3901.822 kb on + strand at 3901.830 kb on - strand at 3901.847 kb on + strand at 3901.863 kb on + strand at 3901.863 kb on + strand at 3901.863 kb on + strand at 3901.863 kb on + strand at 3901.863 kb on + strand at 3901.863 kb on + strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.871 kb on - strand at 3901.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,899,578 + CCNA_03732 0.16 +0.7 3,900,232 - CCNA_03732 0.72 +0.3 3,900,542 - +1.3 3,900,581 + +1.5 3,900,589 - +0.0 3,900,589 - -2.2 3,900,591 + -1.3 3,900,603 - -0.6 3,900,621 + -1.8 3,900,629 - -2.7 3,900,653 + -0.0 3,900,659 + -1.6 3,900,682 + CCNA_03733 0.11 -2.3 3,900,689 + CCNA_03733 0.12 -1.4 3,900,691 - CCNA_03733 0.12 -2.1 3,900,715 + CCNA_03733 0.14 -2.4 3,900,723 - CCNA_03733 0.14 -0.8 3,900,735 + CCNA_03733 0.15 +1.9 3,900,781 + CCNA_03733 0.19 +0.0 3,900,789 - CCNA_03733 0.19 -1.2 3,900,794 + CCNA_03733 0.20 -0.8 3,900,803 - CCNA_03733 0.20 -2.8 3,900,829 - CCNA_03733 0.22 -2.7 3,900,854 + CCNA_03733 0.24 -2.0 3,900,862 - CCNA_03733 0.25 -3.4 3,900,862 - CCNA_03733 0.25 -2.4 3,900,872 - CCNA_03733 0.26 -0.1 3,900,896 - CCNA_03733 0.27 -1.9 3,900,932 + CCNA_03733 0.30 -2.4 3,900,940 - CCNA_03733 0.31 -2.0 3,900,970 - CCNA_03733 0.33 +0.1 3,900,971 + CCNA_03733 0.33 -2.3 3,900,979 - CCNA_03733 0.34 -2.8 3,900,980 - CCNA_03733 0.34 -3.3 3,901,043 + CCNA_03733 0.39 +0.9 3,901,043 + CCNA_03733 0.39 -0.9 3,901,070 + CCNA_03733 0.41 -0.6 3,901,082 + CCNA_03733 0.42 -1.9 3,901,092 + CCNA_03733 0.42 +0.7 3,901,092 - CCNA_03733 0.42 -1.5 3,901,110 + CCNA_03733 0.44 +0.5 3,901,183 + CCNA_03733 0.49 -2.5 3,901,189 - CCNA_03733 0.50 -3.9 3,901,191 - CCNA_03733 0.50 -1.5 3,901,215 - CCNA_03733 0.52 -1.2 3,901,215 - CCNA_03733 0.52 -2.1 3,901,215 - CCNA_03733 0.52 -0.5 3,901,273 - CCNA_03733 0.56 +1.2 3,901,299 + CCNA_03733 0.58 -1.2 3,901,309 + CCNA_03733 0.59 +0.9 3,901,389 - CCNA_03733 0.65 +0.9 3,901,428 + CCNA_03733 0.68 -1.4 3,901,428 + CCNA_03733 0.68 -2.4 3,901,428 + CCNA_03733 0.68 -1.3 3,901,434 - +1.9 3,901,436 - CCNA_03733 0.69 -1.5 3,901,436 - CCNA_03733 0.69 -2.1 3,901,436 - CCNA_03733 0.69 +1.9 3,901,455 - CCNA_03733 0.70 -2.0 3,901,487 - CCNA_03733 0.73 -3.4 3,901,504 - CCNA_03733 0.74 -0.0 3,901,583 + CCNA_03733 0.80 -0.8 3,901,589 + CCNA_03733 0.80 -1.9 3,901,591 - CCNA_03733 0.80 -1.6 3,901,627 + CCNA_03733 0.83 -1.5 3,901,650 + CCNA_03733 0.85 -0.5 3,901,653 - CCNA_03733 0.85 -2.5 3,901,701 - CCNA_03733 0.89 -2.8 3,901,702 - CCNA_03733 0.89 -2.4 3,901,720 - -2.0 3,901,734 - +0.4 3,901,760 - -0.6 3,901,791 + +0.2 3,901,799 - -2.7 3,901,799 - -3.6 3,901,822 + -0.1 3,901,830 - -1.6 3,901,847 + -0.6 3,901,863 + -1.6 3,901,863 + -0.1 3,901,863 + -1.2 3,901,863 + -0.7 3,901,863 + -1.2 3,901,863 + +1.8 3,901,871 - +0.7 3,901,871 - -2.1 3,901,871 - -1.4 3,901,871 - -1.8 3,901,871 - +0.2 3,901,871 - -1.0 3,901,871 - -0.6 3,901,871 - +1.5 3,901,871 - -0.9 3,901,871 - -0.1 3,901,871 - -0.3 3,901,871 - -1.3 3,901,871 - +1.0 3,901,871 - +1.5 3,901,871 - +1.2 3,901,904 + -0.1
Or see this region's nucleotide sequence