Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03733

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03732 and CCNA_03733 overlap by 17 nucleotidesCCNA_03733 and CCNA_03734 are separated by 94 nucleotides CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552 _03732 CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846 _03733 CCNA_03734: CCNA_03734 - glutamine-dependent NAD synthetase, at 3,901,941 to 3,903,977 _03734 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3899.578 kb on + strand, within CCNA_03732at 3900.232 kb on - strand, within CCNA_03732at 3900.542 kb on - strandat 3900.581 kb on + strandat 3900.589 kb on - strandat 3900.589 kb on - strandat 3900.591 kb on + strandat 3900.603 kb on - strandat 3900.621 kb on + strandat 3900.629 kb on - strandat 3900.653 kb on + strandat 3900.659 kb on + strandat 3900.682 kb on + strand, within CCNA_03733at 3900.689 kb on + strand, within CCNA_03733at 3900.691 kb on - strand, within CCNA_03733at 3900.715 kb on + strand, within CCNA_03733at 3900.723 kb on - strand, within CCNA_03733at 3900.735 kb on + strand, within CCNA_03733at 3900.781 kb on + strand, within CCNA_03733at 3900.789 kb on - strand, within CCNA_03733at 3900.794 kb on + strand, within CCNA_03733at 3900.803 kb on - strand, within CCNA_03733at 3900.829 kb on - strand, within CCNA_03733at 3900.854 kb on + strand, within CCNA_03733at 3900.862 kb on - strand, within CCNA_03733at 3900.862 kb on - strand, within CCNA_03733at 3900.872 kb on - strand, within CCNA_03733at 3900.896 kb on - strand, within CCNA_03733at 3900.932 kb on + strand, within CCNA_03733at 3900.940 kb on - strand, within CCNA_03733at 3900.970 kb on - strand, within CCNA_03733at 3900.971 kb on + strand, within CCNA_03733at 3900.979 kb on - strand, within CCNA_03733at 3900.980 kb on - strand, within CCNA_03733at 3901.043 kb on + strand, within CCNA_03733at 3901.043 kb on + strand, within CCNA_03733at 3901.070 kb on + strand, within CCNA_03733at 3901.082 kb on + strand, within CCNA_03733at 3901.092 kb on + strand, within CCNA_03733at 3901.092 kb on - strand, within CCNA_03733at 3901.110 kb on + strand, within CCNA_03733at 3901.183 kb on + strand, within CCNA_03733at 3901.189 kb on - strand, within CCNA_03733at 3901.191 kb on - strand, within CCNA_03733at 3901.215 kb on - strand, within CCNA_03733at 3901.215 kb on - strand, within CCNA_03733at 3901.215 kb on - strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.299 kb on + strand, within CCNA_03733at 3901.309 kb on + strand, within CCNA_03733at 3901.389 kb on - strand, within CCNA_03733at 3901.428 kb on + strand, within CCNA_03733at 3901.428 kb on + strand, within CCNA_03733at 3901.428 kb on + strand, within CCNA_03733at 3901.434 kb on - strandat 3901.436 kb on - strand, within CCNA_03733at 3901.436 kb on - strand, within CCNA_03733at 3901.436 kb on - strand, within CCNA_03733at 3901.455 kb on - strand, within CCNA_03733at 3901.487 kb on - strand, within CCNA_03733at 3901.504 kb on - strand, within CCNA_03733at 3901.583 kb on + strand, within CCNA_03733at 3901.589 kb on + strand, within CCNA_03733at 3901.591 kb on - strand, within CCNA_03733at 3901.627 kb on + strand, within CCNA_03733at 3901.650 kb on + strand, within CCNA_03733at 3901.653 kb on - strand, within CCNA_03733at 3901.701 kb on - strand, within CCNA_03733at 3901.702 kb on - strand, within CCNA_03733at 3901.720 kb on - strandat 3901.734 kb on - strandat 3901.760 kb on - strandat 3901.791 kb on + strandat 3901.799 kb on - strandat 3901.799 kb on - strandat 3901.822 kb on + strandat 3901.830 kb on - strandat 3901.847 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,899,578 + CCNA_03732 0.16 +0.7
3,900,232 - CCNA_03732 0.72 +0.3
3,900,542 - +1.3
3,900,581 + +1.5
3,900,589 - +0.0
3,900,589 - -2.2
3,900,591 + -1.3
3,900,603 - -0.6
3,900,621 + -1.8
3,900,629 - -2.7
3,900,653 + -0.0
3,900,659 + -1.6
3,900,682 + CCNA_03733 0.11 -2.3
3,900,689 + CCNA_03733 0.12 -1.4
3,900,691 - CCNA_03733 0.12 -2.1
3,900,715 + CCNA_03733 0.14 -2.4
3,900,723 - CCNA_03733 0.14 -0.8
3,900,735 + CCNA_03733 0.15 +1.9
3,900,781 + CCNA_03733 0.19 +0.0
3,900,789 - CCNA_03733 0.19 -1.2
3,900,794 + CCNA_03733 0.20 -0.8
3,900,803 - CCNA_03733 0.20 -2.8
3,900,829 - CCNA_03733 0.22 -2.7
3,900,854 + CCNA_03733 0.24 -2.0
3,900,862 - CCNA_03733 0.25 -3.4
3,900,862 - CCNA_03733 0.25 -2.4
3,900,872 - CCNA_03733 0.26 -0.1
3,900,896 - CCNA_03733 0.27 -1.9
3,900,932 + CCNA_03733 0.30 -2.4
3,900,940 - CCNA_03733 0.31 -2.0
3,900,970 - CCNA_03733 0.33 +0.1
3,900,971 + CCNA_03733 0.33 -2.3
3,900,979 - CCNA_03733 0.34 -2.8
3,900,980 - CCNA_03733 0.34 -3.3
3,901,043 + CCNA_03733 0.39 +0.9
3,901,043 + CCNA_03733 0.39 -0.9
3,901,070 + CCNA_03733 0.41 -0.6
3,901,082 + CCNA_03733 0.42 -1.9
3,901,092 + CCNA_03733 0.42 +0.7
3,901,092 - CCNA_03733 0.42 -1.5
3,901,110 + CCNA_03733 0.44 +0.5
3,901,183 + CCNA_03733 0.49 -2.5
3,901,189 - CCNA_03733 0.50 -3.9
3,901,191 - CCNA_03733 0.50 -1.5
3,901,215 - CCNA_03733 0.52 -1.2
3,901,215 - CCNA_03733 0.52 -2.1
3,901,215 - CCNA_03733 0.52 -0.5
3,901,273 - CCNA_03733 0.56 +1.2
3,901,299 + CCNA_03733 0.58 -1.2
3,901,309 + CCNA_03733 0.59 +0.9
3,901,389 - CCNA_03733 0.65 +0.9
3,901,428 + CCNA_03733 0.68 -1.4
3,901,428 + CCNA_03733 0.68 -2.4
3,901,428 + CCNA_03733 0.68 -1.3
3,901,434 - +1.9
3,901,436 - CCNA_03733 0.69 -1.5
3,901,436 - CCNA_03733 0.69 -2.1
3,901,436 - CCNA_03733 0.69 +1.9
3,901,455 - CCNA_03733 0.70 -2.0
3,901,487 - CCNA_03733 0.73 -3.4
3,901,504 - CCNA_03733 0.74 -0.0
3,901,583 + CCNA_03733 0.80 -0.8
3,901,589 + CCNA_03733 0.80 -1.9
3,901,591 - CCNA_03733 0.80 -1.6
3,901,627 + CCNA_03733 0.83 -1.5
3,901,650 + CCNA_03733 0.85 -0.5
3,901,653 - CCNA_03733 0.85 -2.5
3,901,701 - CCNA_03733 0.89 -2.8
3,901,702 - CCNA_03733 0.89 -2.4
3,901,720 - -2.0
3,901,734 - +0.4
3,901,760 - -0.6
3,901,791 + +0.2
3,901,799 - -2.7
3,901,799 - -3.6
3,901,822 + -0.1
3,901,830 - -1.6
3,901,847 + -0.6
3,901,863 + -1.6
3,901,863 + -0.1
3,901,863 + -1.2
3,901,863 + -0.7
3,901,863 + -1.2
3,901,863 + +1.8
3,901,871 - +0.7
3,901,871 - -2.1
3,901,871 - -1.4
3,901,871 - -1.8
3,901,871 - +0.2
3,901,871 - -1.0
3,901,871 - -0.6
3,901,871 - +1.5
3,901,871 - -0.9
3,901,871 - -0.1
3,901,871 - -0.3
3,901,871 - -1.3
3,901,871 - +1.0
3,901,871 - +1.5
3,901,871 - +1.2
3,901,904 + -0.1

Or see this region's nucleotide sequence