Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03657

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03655 and CCNA_03656 are separated by 9 nucleotidesCCNA_03656 and CCNA_03657 are separated by 12 nucleotidesCCNA_03657 and CCNA_03658 are separated by 12 nucleotides CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418 _03656 CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258 _03657 CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491 _03658 Position (kb) 3818 3819 3820Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3817.444 kb on - strandat 3817.444 kb on - strandat 3817.444 kb on - strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.492 kb on + strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3817.500 kb on - strandat 3818.422 kb on - strandat 3818.429 kb on - strandat 3818.436 kb on - strandat 3818.463 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.470 kb on - strandat 3818.480 kb on - strandat 3818.542 kb on + strand, within CCNA_03657at 3818.550 kb on - strand, within CCNA_03657at 3818.646 kb on - strand, within CCNA_03657at 3818.659 kb on + strand, within CCNA_03657at 3818.671 kb on + strand, within CCNA_03657at 3818.744 kb on - strand, within CCNA_03657at 3818.790 kb on - strandat 3818.893 kb on - strand, within CCNA_03657at 3818.926 kb on - strand, within CCNA_03657at 3818.936 kb on + strand, within CCNA_03657at 3818.945 kb on + strand, within CCNA_03657at 3818.953 kb on + strand, within CCNA_03657at 3818.958 kb on - strand, within CCNA_03657at 3819.011 kb on - strand, within CCNA_03657at 3819.019 kb on - strand, within CCNA_03657at 3819.078 kb on - strand, within CCNA_03657at 3819.092 kb on - strand, within CCNA_03657at 3819.108 kb on - strand, within CCNA_03657at 3819.255 kb on - strandat 3819.276 kb on - strandat 3819.308 kb on - strandat 3819.347 kb on + strandat 3819.355 kb on - strandat 3819.361 kb on - strandat 3819.371 kb on - strandat 3819.391 kb on - strandat 3819.402 kb on - strand, within CCNA_03658at 3819.442 kb on - strand, within CCNA_03658at 3819.452 kb on - strand, within CCNA_03658at 3819.462 kb on - strand, within CCNA_03658at 3819.467 kb on + strand, within CCNA_03658at 3819.527 kb on - strand, within CCNA_03658at 3819.549 kb on - strand, within CCNA_03658at 3819.577 kb on - strand, within CCNA_03658at 3819.668 kb on - strand, within CCNA_03658at 3819.710 kb on - strand, within CCNA_03658at 3819.712 kb on - strand, within CCNA_03658at 3819.754 kb on - strand, within CCNA_03658at 3819.775 kb on - strand, within CCNA_03658at 3819.782 kb on - strand, within CCNA_03658at 3819.787 kb on - strand, within CCNA_03658at 3819.871 kb on - strand, within CCNA_03658at 3819.897 kb on + strand, within CCNA_03658at 3819.905 kb on - strand, within CCNA_03658at 3820.027 kb on - strand, within CCNA_03658at 3820.027 kb on - strandat 3820.046 kb on - strand, within CCNA_03658at 3820.062 kb on - strand, within CCNA_03658at 3820.072 kb on - strand, within CCNA_03658at 3820.072 kb on - strand, within CCNA_03658at 3820.077 kb on - strand, within CCNA_03658at 3820.119 kb on - strandat 3820.119 kb on - strand, within CCNA_03658at 3820.119 kb on - strand, within CCNA_03658at 3820.139 kb on + strand, within CCNA_03658at 3820.240 kb on - strand, within CCNA_03658

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,817,444 - -1.3
3,817,444 - -0.9
3,817,444 - +0.6
3,817,492 + -1.3
3,817,492 + -2.1
3,817,492 + +0.4
3,817,492 + +0.7
3,817,492 + +0.0
3,817,500 - +0.7
3,817,500 - +0.4
3,817,500 - +0.2
3,817,500 - +1.4
3,817,500 - +0.1
3,817,500 - -0.2
3,817,500 - -0.2
3,818,422 - +0.4
3,818,429 - -0.2
3,818,436 - -0.7
3,818,463 - -1.0
3,818,470 - -0.7
3,818,470 - +0.5
3,818,470 - +0.3
3,818,470 - -0.3
3,818,470 - +0.0
3,818,470 - -0.6
3,818,470 - +0.1
3,818,470 - -0.8
3,818,470 - -0.5
3,818,470 - -0.9
3,818,470 - -1.2
3,818,470 - +1.5
3,818,470 - +0.1
3,818,470 - -0.4
3,818,470 - -0.9
3,818,470 - -1.3
3,818,470 - +0.2
3,818,470 - +0.9
3,818,470 - -1.2
3,818,470 - +0.7
3,818,470 - -0.8
3,818,480 - -0.1
3,818,542 + CCNA_03657 0.13 +0.0
3,818,550 - CCNA_03657 0.14 -1.2
3,818,646 - CCNA_03657 0.26 -1.9
3,818,659 + CCNA_03657 0.28 -0.6
3,818,671 + CCNA_03657 0.29 -0.5
3,818,744 - CCNA_03657 0.38 -0.7
3,818,790 - +2.5
3,818,893 - CCNA_03657 0.56 -1.0
3,818,926 - CCNA_03657 0.60 -0.6
3,818,936 + CCNA_03657 0.61 -1.1
3,818,945 + CCNA_03657 0.62 +1.5
3,818,953 + CCNA_03657 0.63 +1.8
3,818,958 - CCNA_03657 0.64 -1.7
3,819,011 - CCNA_03657 0.70 +0.0
3,819,019 - CCNA_03657 0.71 -0.6
3,819,078 - CCNA_03657 0.78 -1.7
3,819,092 - CCNA_03657 0.80 -0.2
3,819,108 - CCNA_03657 0.82 -2.1
3,819,255 - -0.4
3,819,276 - -0.4
3,819,308 - -0.1
3,819,347 + -0.6
3,819,355 - -1.0
3,819,361 - -0.3
3,819,371 - -2.2
3,819,391 - -1.7
3,819,402 - CCNA_03658 0.11 -2.0
3,819,442 - CCNA_03658 0.14 -0.3
3,819,452 - CCNA_03658 0.15 -2.1
3,819,462 - CCNA_03658 0.16 -0.4
3,819,467 + CCNA_03658 0.16 -0.3
3,819,527 - CCNA_03658 0.21 -0.0
3,819,549 - CCNA_03658 0.23 -0.6
3,819,577 - CCNA_03658 0.25 -0.6
3,819,668 - CCNA_03658 0.33 -0.3
3,819,710 - CCNA_03658 0.36 -0.2
3,819,712 - CCNA_03658 0.36 -0.5
3,819,754 - CCNA_03658 0.40 -0.7
3,819,775 - CCNA_03658 0.41 -1.3
3,819,782 - CCNA_03658 0.42 +0.5
3,819,787 - CCNA_03658 0.42 -1.3
3,819,871 - CCNA_03658 0.49 +0.5
3,819,897 + CCNA_03658 0.51 -0.1
3,819,905 - CCNA_03658 0.52 -0.8
3,820,027 - CCNA_03658 0.62 -0.1
3,820,027 - +0.9
3,820,046 - CCNA_03658 0.63 -0.4
3,820,062 - CCNA_03658 0.65 +1.3
3,820,072 - CCNA_03658 0.66 -0.0
3,820,072 - CCNA_03658 0.66 -0.9
3,820,077 - CCNA_03658 0.66 -0.8
3,820,119 - +3.5
3,820,119 - CCNA_03658 0.69 +1.9
3,820,119 - CCNA_03658 0.69 -0.5
3,820,139 + CCNA_03658 0.71 +0.3
3,820,240 - CCNA_03658 0.79 +1.1

Or see this region's nucleotide sequence