Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03655 and CCNA_03656 are separated by 9 nucleotides CCNA_03656 and CCNA_03657 are separated by 12 nucleotides CCNA_03657 and CCNA_03658 are separated by 12 nucleotides
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
CCNA_03656: CCNA_03656 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,817,495 to 3,818,418
_03656
CCNA_03657: CCNA_03657 - tryptophan synthase alpha chain, at 3,818,431 to 3,819,258
_03657
CCNA_03658: CCNA_03658 - tryptophan synthase beta chain, at 3,819,271 to 3,820,491
_03658
Position (kb)
3818
3819
3820 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3817.444 kb on - strand at 3817.444 kb on - strand at 3817.444 kb on - strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.492 kb on + strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3817.500 kb on - strand at 3818.422 kb on - strand at 3818.429 kb on - strand at 3818.436 kb on - strand at 3818.463 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.470 kb on - strand at 3818.480 kb on - strand at 3818.542 kb on + strand, within CCNA_03657 at 3818.550 kb on - strand, within CCNA_03657 at 3818.646 kb on - strand, within CCNA_03657 at 3818.659 kb on + strand, within CCNA_03657 at 3818.671 kb on + strand, within CCNA_03657 at 3818.744 kb on - strand, within CCNA_03657 at 3818.790 kb on - strand at 3818.893 kb on - strand, within CCNA_03657 at 3818.926 kb on - strand, within CCNA_03657 at 3818.936 kb on + strand, within CCNA_03657 at 3818.945 kb on + strand, within CCNA_03657 at 3818.953 kb on + strand, within CCNA_03657 at 3818.958 kb on - strand, within CCNA_03657 at 3819.011 kb on - strand, within CCNA_03657 at 3819.019 kb on - strand, within CCNA_03657 at 3819.078 kb on - strand, within CCNA_03657 at 3819.092 kb on - strand, within CCNA_03657 at 3819.108 kb on - strand, within CCNA_03657 at 3819.255 kb on - strand at 3819.276 kb on - strand at 3819.308 kb on - strand at 3819.347 kb on + strand at 3819.355 kb on - strand at 3819.361 kb on - strand at 3819.371 kb on - strand at 3819.391 kb on - strand at 3819.402 kb on - strand, within CCNA_03658 at 3819.442 kb on - strand, within CCNA_03658 at 3819.452 kb on - strand, within CCNA_03658 at 3819.462 kb on - strand, within CCNA_03658 at 3819.467 kb on + strand, within CCNA_03658 at 3819.527 kb on - strand, within CCNA_03658 at 3819.549 kb on - strand, within CCNA_03658 at 3819.577 kb on - strand, within CCNA_03658 at 3819.668 kb on - strand, within CCNA_03658 at 3819.710 kb on - strand, within CCNA_03658 at 3819.712 kb on - strand, within CCNA_03658 at 3819.754 kb on - strand, within CCNA_03658 at 3819.775 kb on - strand, within CCNA_03658 at 3819.782 kb on - strand, within CCNA_03658 at 3819.787 kb on - strand, within CCNA_03658 at 3819.871 kb on - strand, within CCNA_03658 at 3819.897 kb on + strand, within CCNA_03658 at 3819.905 kb on - strand, within CCNA_03658 at 3820.027 kb on - strand, within CCNA_03658 at 3820.027 kb on - strand at 3820.046 kb on - strand, within CCNA_03658 at 3820.062 kb on - strand, within CCNA_03658 at 3820.072 kb on - strand, within CCNA_03658 at 3820.072 kb on - strand, within CCNA_03658 at 3820.077 kb on - strand, within CCNA_03658 at 3820.119 kb on - strand at 3820.119 kb on - strand, within CCNA_03658 at 3820.119 kb on - strand, within CCNA_03658 at 3820.139 kb on + strand, within CCNA_03658 at 3820.240 kb on - strand, within CCNA_03658
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,817,444 - -1.3 3,817,444 - -0.9 3,817,444 - +0.6 3,817,492 + -1.3 3,817,492 + -2.1 3,817,492 + +0.4 3,817,492 + +0.7 3,817,492 + +0.0 3,817,500 - +0.7 3,817,500 - +0.4 3,817,500 - +0.2 3,817,500 - +1.4 3,817,500 - +0.1 3,817,500 - -0.2 3,817,500 - -0.2 3,818,422 - +0.4 3,818,429 - -0.2 3,818,436 - -0.7 3,818,463 - -1.0 3,818,470 - -0.7 3,818,470 - +0.5 3,818,470 - +0.3 3,818,470 - -0.3 3,818,470 - +0.0 3,818,470 - -0.6 3,818,470 - +0.1 3,818,470 - -0.8 3,818,470 - -0.5 3,818,470 - -0.9 3,818,470 - -1.2 3,818,470 - +1.5 3,818,470 - +0.1 3,818,470 - -0.4 3,818,470 - -0.9 3,818,470 - -1.3 3,818,470 - +0.2 3,818,470 - +0.9 3,818,470 - -1.2 3,818,470 - +0.7 3,818,470 - -0.8 3,818,480 - -0.1 3,818,542 + CCNA_03657 0.13 +0.0 3,818,550 - CCNA_03657 0.14 -1.2 3,818,646 - CCNA_03657 0.26 -1.9 3,818,659 + CCNA_03657 0.28 -0.6 3,818,671 + CCNA_03657 0.29 -0.5 3,818,744 - CCNA_03657 0.38 -0.7 3,818,790 - +2.5 3,818,893 - CCNA_03657 0.56 -1.0 3,818,926 - CCNA_03657 0.60 -0.6 3,818,936 + CCNA_03657 0.61 -1.1 3,818,945 + CCNA_03657 0.62 +1.5 3,818,953 + CCNA_03657 0.63 +1.8 3,818,958 - CCNA_03657 0.64 -1.7 3,819,011 - CCNA_03657 0.70 +0.0 3,819,019 - CCNA_03657 0.71 -0.6 3,819,078 - CCNA_03657 0.78 -1.7 3,819,092 - CCNA_03657 0.80 -0.2 3,819,108 - CCNA_03657 0.82 -2.1 3,819,255 - -0.4 3,819,276 - -0.4 3,819,308 - -0.1 3,819,347 + -0.6 3,819,355 - -1.0 3,819,361 - -0.3 3,819,371 - -2.2 3,819,391 - -1.7 3,819,402 - CCNA_03658 0.11 -2.0 3,819,442 - CCNA_03658 0.14 -0.3 3,819,452 - CCNA_03658 0.15 -2.1 3,819,462 - CCNA_03658 0.16 -0.4 3,819,467 + CCNA_03658 0.16 -0.3 3,819,527 - CCNA_03658 0.21 -0.0 3,819,549 - CCNA_03658 0.23 -0.6 3,819,577 - CCNA_03658 0.25 -0.6 3,819,668 - CCNA_03658 0.33 -0.3 3,819,710 - CCNA_03658 0.36 -0.2 3,819,712 - CCNA_03658 0.36 -0.5 3,819,754 - CCNA_03658 0.40 -0.7 3,819,775 - CCNA_03658 0.41 -1.3 3,819,782 - CCNA_03658 0.42 +0.5 3,819,787 - CCNA_03658 0.42 -1.3 3,819,871 - CCNA_03658 0.49 +0.5 3,819,897 + CCNA_03658 0.51 -0.1 3,819,905 - CCNA_03658 0.52 -0.8 3,820,027 - CCNA_03658 0.62 -0.1 3,820,027 - +0.9 3,820,046 - CCNA_03658 0.63 -0.4 3,820,062 - CCNA_03658 0.65 +1.3 3,820,072 - CCNA_03658 0.66 -0.0 3,820,072 - CCNA_03658 0.66 -0.9 3,820,077 - CCNA_03658 0.66 -0.8 3,820,119 - +3.5 3,820,119 - CCNA_03658 0.69 +1.9 3,820,119 - CCNA_03658 0.69 -0.5 3,820,139 + CCNA_03658 0.71 +0.3 3,820,240 - CCNA_03658 0.79 +1.1
Or see this region's nucleotide sequence