Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03335 and CCNA_03336 overlap by 10 nucleotides CCNA_03336 and CCNA_03337 are separated by 77 nucleotides CCNA_03337 and CCNA_03338 are separated by 196 nucleotides
CCNA_03335: CCNA_03335 - PP-loop family cell cycle control ATPase, at 3,516,491 to 3,517,717
_03335
CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562
_03336
CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206
_03337
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
Position (kb)
3517
3518
3519 Strain fitness (log2 ratio)
-2
-1
0
1 at 3517.685 kb on + strand at 3517.685 kb on + strand at 3517.685 kb on + strand at 3517.685 kb on + strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.693 kb on - strand at 3517.695 kb on + strand at 3517.695 kb on + strand at 3517.703 kb on - strand at 3517.708 kb on - strand at 3517.708 kb on - strand at 3517.756 kb on - strand at 3517.756 kb on - strand at 3517.775 kb on - strand at 3517.775 kb on - strand at 3517.780 kb on - strand at 3517.786 kb on - strand at 3517.840 kb on - strand, within CCNA_03336 at 3517.932 kb on - strand, within CCNA_03336 at 3517.932 kb on - strand, within CCNA_03336 at 3517.998 kb on - strand, within CCNA_03336 at 3518.028 kb on - strand, within CCNA_03336 at 3518.128 kb on - strand, within CCNA_03336 at 3518.257 kb on - strand, within CCNA_03336 at 3518.627 kb on + strand at 3518.627 kb on + strand at 3518.635 kb on - strand at 3518.637 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.227 kb on + strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.235 kb on - strand at 3519.240 kb on - strand at 3519.249 kb on + strand at 3519.252 kb on - strand at 3519.256 kb on + strand at 3519.352 kb on - strand at 3519.375 kb on + strand at 3519.375 kb on + strand at 3519.383 kb on - strand at 3519.383 kb on - strand at 3519.394 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.406 kb on + strand at 3519.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,517,685 + +1.2 3,517,685 + -0.3 3,517,685 + -2.3 3,517,685 + -0.3 3,517,693 - +0.6 3,517,693 - +0.1 3,517,693 - +1.1 3,517,693 - +1.4 3,517,693 - +0.2 3,517,693 - -1.5 3,517,693 - -0.7 3,517,695 + +0.4 3,517,695 + +0.1 3,517,703 - +0.8 3,517,708 - -0.5 3,517,708 - -0.1 3,517,756 - -0.0 3,517,756 - +0.6 3,517,775 - +0.7 3,517,775 - -0.6 3,517,780 - -1.3 3,517,786 - -1.1 3,517,840 - CCNA_03336 0.15 -0.8 3,517,932 - CCNA_03336 0.26 -1.5 3,517,932 - CCNA_03336 0.26 -1.5 3,517,998 - CCNA_03336 0.34 +0.3 3,518,028 - CCNA_03336 0.37 +0.1 3,518,128 - CCNA_03336 0.49 +0.0 3,518,257 - CCNA_03336 0.64 -1.3 3,518,627 + -1.5 3,518,627 + -0.1 3,518,635 - +0.2 3,518,637 + -1.4 3,519,227 + +1.6 3,519,227 + +0.1 3,519,227 + -0.2 3,519,235 - -2.1 3,519,235 - +0.4 3,519,235 - -1.3 3,519,235 - -0.3 3,519,235 - -0.2 3,519,240 - +0.5 3,519,249 + -1.4 3,519,252 - +0.8 3,519,256 + -1.5 3,519,352 - +0.0 3,519,375 + +0.1 3,519,375 + -1.8 3,519,383 - +0.1 3,519,383 - +0.9 3,519,394 + -0.4 3,519,406 + -1.8 3,519,406 + +1.2 3,519,406 + -0.5 3,519,413 - -0.4
Or see this region's nucleotide sequence