Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03336

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03335 and CCNA_03336 overlap by 10 nucleotidesCCNA_03336 and CCNA_03337 are separated by 77 nucleotidesCCNA_03337 and CCNA_03338 are separated by 196 nucleotides CCNA_03335: CCNA_03335 - PP-loop family cell cycle control ATPase, at 3,516,491 to 3,517,717 _03335 CCNA_03336: CCNA_03336 - Tol system periplasmic component YbgF, at 3,517,708 to 3,518,562 _03336 CCNA_03337: CCNA_03337 - peptidoglycan-associated lipoprotein pal, at 3,518,640 to 3,519,206 _03337 CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734 _03338 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -2 -1 0 1at 3517.685 kb on + strandat 3517.685 kb on + strandat 3517.685 kb on + strandat 3517.685 kb on + strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.693 kb on - strandat 3517.695 kb on + strandat 3517.695 kb on + strandat 3517.703 kb on - strandat 3517.708 kb on - strandat 3517.708 kb on - strandat 3517.756 kb on - strandat 3517.756 kb on - strandat 3517.775 kb on - strandat 3517.775 kb on - strandat 3517.780 kb on - strandat 3517.786 kb on - strandat 3517.840 kb on - strand, within CCNA_03336at 3517.932 kb on - strand, within CCNA_03336at 3517.932 kb on - strand, within CCNA_03336at 3517.998 kb on - strand, within CCNA_03336at 3518.028 kb on - strand, within CCNA_03336at 3518.128 kb on - strand, within CCNA_03336at 3518.257 kb on - strand, within CCNA_03336at 3518.627 kb on + strandat 3518.627 kb on + strandat 3518.635 kb on - strandat 3518.637 kb on + strandat 3519.227 kb on + strandat 3519.227 kb on + strandat 3519.227 kb on + strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.235 kb on - strandat 3519.240 kb on - strandat 3519.249 kb on + strandat 3519.252 kb on - strandat 3519.256 kb on + strandat 3519.352 kb on - strandat 3519.375 kb on + strandat 3519.375 kb on + strandat 3519.383 kb on - strandat 3519.383 kb on - strandat 3519.394 kb on + strandat 3519.406 kb on + strandat 3519.406 kb on + strandat 3519.406 kb on + strandat 3519.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,517,685 + +1.2
3,517,685 + -0.3
3,517,685 + -2.3
3,517,685 + -0.3
3,517,693 - +0.6
3,517,693 - +0.1
3,517,693 - +1.1
3,517,693 - +1.4
3,517,693 - +0.2
3,517,693 - -1.5
3,517,693 - -0.7
3,517,695 + +0.4
3,517,695 + +0.1
3,517,703 - +0.8
3,517,708 - -0.5
3,517,708 - -0.1
3,517,756 - -0.0
3,517,756 - +0.6
3,517,775 - +0.7
3,517,775 - -0.6
3,517,780 - -1.3
3,517,786 - -1.1
3,517,840 - CCNA_03336 0.15 -0.8
3,517,932 - CCNA_03336 0.26 -1.5
3,517,932 - CCNA_03336 0.26 -1.5
3,517,998 - CCNA_03336 0.34 +0.3
3,518,028 - CCNA_03336 0.37 +0.1
3,518,128 - CCNA_03336 0.49 +0.0
3,518,257 - CCNA_03336 0.64 -1.3
3,518,627 + -1.5
3,518,627 + -0.1
3,518,635 - +0.2
3,518,637 + -1.4
3,519,227 + +1.6
3,519,227 + +0.1
3,519,227 + -0.2
3,519,235 - -2.1
3,519,235 - +0.4
3,519,235 - -1.3
3,519,235 - -0.3
3,519,235 - -0.2
3,519,240 - +0.5
3,519,249 + -1.4
3,519,252 - +0.8
3,519,256 + -1.5
3,519,352 - +0.0
3,519,375 + +0.1
3,519,375 + -1.8
3,519,383 - +0.1
3,519,383 - +0.9
3,519,394 + -0.4
3,519,406 + -1.8
3,519,406 + +1.2
3,519,406 + -0.5
3,519,413 - -0.4

Or see this region's nucleotide sequence