Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02886

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02884 and CCNA_02885 are separated by 109 nucleotidesCCNA_02885 and CCNA_02886 are separated by 148 nucleotidesCCNA_02886 and CCNA_02887 are separated by 229 nucleotides CCNA_02884: CCNA_02884 - TetR-family transcriptional regulator, at 3,032,855 to 3,033,622 _02884 CCNA_02885: CCNA_02885 - isochorismatase family protein, at 3,033,732 to 3,034,448 _02885 CCNA_02886: CCNA_02886 - RutC-family pyrimidine utilization protein C, at 3,034,597 to 3,034,986 _02886 CCNA_02887: CCNA_02887 - hydrolase/acyltransferase family protein, at 3,035,216 to 3,036,025 _02887 Position (kb) 3034 3035Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3033.625 kb on - strandat 3033.640 kb on - strandat 3033.640 kb on - strandat 3033.651 kb on + strandat 3033.651 kb on + strandat 3033.752 kb on + strandat 3033.757 kb on + strandat 3033.760 kb on - strandat 3033.771 kb on - strandat 3033.785 kb on + strandat 3033.785 kb on + strandat 3033.890 kb on - strand, within CCNA_02885at 3033.909 kb on - strandat 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.920 kb on + strand, within CCNA_02885at 3033.927 kb on + strand, within CCNA_02885at 3033.928 kb on - strand, within CCNA_02885at 3033.928 kb on - strand, within CCNA_02885at 3033.928 kb on - strand, within CCNA_02885at 3033.949 kb on - strand, within CCNA_02885at 3034.037 kb on + strand, within CCNA_02885at 3034.040 kb on - strand, within CCNA_02885at 3034.045 kb on + strand, within CCNA_02885at 3034.099 kb on + strand, within CCNA_02885at 3034.107 kb on - strand, within CCNA_02885at 3034.108 kb on + strand, within CCNA_02885at 3034.108 kb on + strand, within CCNA_02885at 3034.108 kb on + strand, within CCNA_02885at 3034.116 kb on - strand, within CCNA_02885at 3034.155 kb on - strand, within CCNA_02885at 3034.165 kb on - strand, within CCNA_02885at 3034.171 kb on + strand, within CCNA_02885at 3034.179 kb on - strand, within CCNA_02885at 3034.191 kb on + strand, within CCNA_02885at 3034.191 kb on + strand, within CCNA_02885at 3034.191 kb on + strand, within CCNA_02885at 3034.191 kb on + strand, within CCNA_02885at 3034.271 kb on - strand, within CCNA_02885at 3034.293 kb on - strand, within CCNA_02885at 3034.338 kb on + strand, within CCNA_02885at 3034.367 kb on + strand, within CCNA_02885at 3034.375 kb on - strand, within CCNA_02885at 3034.375 kb on - strand, within CCNA_02885at 3034.375 kb on - strand, within CCNA_02885at 3034.382 kb on - strandat 3034.395 kb on + strandat 3034.451 kb on - strandat 3034.455 kb on - strandat 3034.474 kb on + strandat 3034.482 kb on - strandat 3034.482 kb on - strandat 3034.482 kb on - strandat 3034.487 kb on + strandat 3034.487 kb on - strandat 3034.487 kb on - strandat 3034.495 kb on - strandat 3034.496 kb on + strandat 3034.496 kb on + strandat 3034.504 kb on - strandat 3034.515 kb on + strandat 3034.515 kb on + strandat 3034.537 kb on - strandat 3034.555 kb on + strandat 3034.572 kb on + strandat 3034.580 kb on - strandat 3034.580 kb on - strandat 3034.599 kb on + strandat 3034.599 kb on + strandat 3034.607 kb on - strandat 3034.686 kb on + strand, within CCNA_02886at 3034.718 kb on - strand, within CCNA_02886at 3034.718 kb on - strand, within CCNA_02886at 3034.752 kb on - strand, within CCNA_02886at 3034.752 kb on - strand, within CCNA_02886at 3034.752 kb on - strand, within CCNA_02886at 3034.752 kb on - strand, within CCNA_02886at 3034.759 kb on + strand, within CCNA_02886at 3034.767 kb on - strand, within CCNA_02886at 3034.782 kb on + strand, within CCNA_02886at 3034.816 kb on + strand, within CCNA_02886at 3034.826 kb on + strand, within CCNA_02886at 3034.869 kb on + strand, within CCNA_02886at 3034.877 kb on - strand, within CCNA_02886at 3034.877 kb on - strand, within CCNA_02886at 3034.877 kb on - strand, within CCNA_02886at 3034.877 kb on - strand, within CCNA_02886at 3034.991 kb on - strandat 3035.083 kb on - strandat 3035.083 kb on - strandat 3035.133 kb on - strandat 3035.164 kb on + strandat 3035.180 kb on + strandat 3035.188 kb on - strandat 3035.206 kb on + strandat 3035.206 kb on + strandat 3035.206 kb on + strandat 3035.206 kb on + strandat 3035.206 kb on + strandat 3035.230 kb on + strandat 3035.259 kb on - strandat 3035.261 kb on + strandat 3035.292 kb on - strandat 3035.309 kb on + strand, within CCNA_02887at 3035.309 kb on + strand, within CCNA_02887at 3035.309 kb on + strand, within CCNA_02887at 3035.312 kb on - strand, within CCNA_02887at 3035.312 kb on - strand, within CCNA_02887at 3035.317 kb on - strand, within CCNA_02887at 3035.319 kb on + strand, within CCNA_02887at 3035.329 kb on + strand, within CCNA_02887at 3035.329 kb on + strand, within CCNA_02887at 3035.337 kb on - strand, within CCNA_02887at 3035.352 kb on + strand, within CCNA_02887at 3035.352 kb on - strand, within CCNA_02887at 3035.357 kb on + strand, within CCNA_02887at 3035.360 kb on - strand, within CCNA_02887at 3035.372 kb on + strand, within CCNA_02887at 3035.375 kb on - strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.379 kb on + strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.387 kb on - strand, within CCNA_02887at 3035.399 kb on + strand, within CCNA_02887at 3035.400 kb on + strand, within CCNA_02887at 3035.407 kb on - strand, within CCNA_02887at 3035.417 kb on - strand, within CCNA_02887at 3035.433 kb on - strand, within CCNA_02887at 3035.447 kb on + strand, within CCNA_02887at 3035.464 kb on + strand, within CCNA_02887at 3035.464 kb on + strand, within CCNA_02887at 3035.466 kb on - strand, within CCNA_02887at 3035.475 kb on + strand, within CCNA_02887at 3035.475 kb on + strand, within CCNA_02887at 3035.475 kb on + strand, within CCNA_02887at 3035.475 kb on + strand, within CCNA_02887at 3035.482 kb on - strand, within CCNA_02887at 3035.483 kb on - strand, within CCNA_02887at 3035.483 kb on - strand, within CCNA_02887at 3035.483 kb on - strand, within CCNA_02887at 3035.483 kb on - strand, within CCNA_02887at 3035.486 kb on + strand, within CCNA_02887at 3035.491 kb on + strand, within CCNA_02887at 3035.493 kb on - strand, within CCNA_02887at 3035.493 kb on - strand, within CCNA_02887at 3035.540 kb on + strand, within CCNA_02887at 3035.540 kb on + strand, within CCNA_02887at 3035.548 kb on - strand, within CCNA_02887at 3035.553 kb on - strand, within CCNA_02887at 3035.562 kb on + strand, within CCNA_02887at 3035.593 kb on - strand, within CCNA_02887at 3035.598 kb on - strand, within CCNA_02887at 3035.603 kb on - strand, within CCNA_02887at 3035.619 kb on + strand, within CCNA_02887at 3035.627 kb on - strand, within CCNA_02887at 3035.627 kb on - strand, within CCNA_02887at 3035.631 kb on + strand, within CCNA_02887at 3035.631 kb on + strand, within CCNA_02887at 3035.639 kb on - strand, within CCNA_02887at 3035.641 kb on + strand, within CCNA_02887at 3035.721 kb on + strand, within CCNA_02887at 3035.768 kb on - strand, within CCNA_02887at 3035.775 kb on + strand, within CCNA_02887at 3035.775 kb on + strand, within CCNA_02887at 3035.775 kb on + strand, within CCNA_02887at 3035.785 kb on + strand, within CCNA_02887at 3035.799 kb on - strand, within CCNA_02887at 3035.799 kb on - strand, within CCNA_02887at 3035.799 kb on - strand, within CCNA_02887at 3035.815 kb on - strand, within CCNA_02887at 3035.835 kb on + strand, within CCNA_02887at 3035.843 kb on - strand, within CCNA_02887at 3035.849 kb on + strand, within CCNA_02887at 3035.849 kb on + strand, within CCNA_02887at 3035.849 kb on + strand, within CCNA_02887at 3035.854 kb on + strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.857 kb on - strand, within CCNA_02887at 3035.920 kb on + strand, within CCNA_02887at 3035.961 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
3,033,625 - +0.6
3,033,640 - +1.0
3,033,640 - -0.1
3,033,651 + +0.6
3,033,651 + +4.2
3,033,752 + -1.5
3,033,757 + +0.4
3,033,760 - +0.1
3,033,771 - +1.8
3,033,785 + +1.5
3,033,785 + +3.6
3,033,890 - CCNA_02885 0.22 -0.6
3,033,909 - +2.6
3,033,920 + CCNA_02885 0.26 -0.5
3,033,920 + CCNA_02885 0.26 -1.3
3,033,920 + CCNA_02885 0.26 +0.3
3,033,920 + CCNA_02885 0.26 +1.0
3,033,920 + CCNA_02885 0.26 -1.0
3,033,920 + CCNA_02885 0.26 +0.3
3,033,920 + CCNA_02885 0.26 +2.0
3,033,927 + CCNA_02885 0.27 +0.3
3,033,928 - CCNA_02885 0.27 -1.5
3,033,928 - CCNA_02885 0.27 -0.5
3,033,928 - CCNA_02885 0.27 -1.4
3,033,949 - CCNA_02885 0.30 -1.0
3,034,037 + CCNA_02885 0.43 +0.6
3,034,040 - CCNA_02885 0.43 +0.5
3,034,045 + CCNA_02885 0.44 -1.0
3,034,099 + CCNA_02885 0.51 -0.2
3,034,107 - CCNA_02885 0.52 -0.5
3,034,108 + CCNA_02885 0.52 -0.2
3,034,108 + CCNA_02885 0.52 -1.1
3,034,108 + CCNA_02885 0.52 -0.7
3,034,116 - CCNA_02885 0.54 -1.5
3,034,155 - CCNA_02885 0.59 -0.9
3,034,165 - CCNA_02885 0.60 -0.7
3,034,171 + CCNA_02885 0.61 -0.0
3,034,179 - CCNA_02885 0.62 -0.9
3,034,191 + CCNA_02885 0.64 -1.5
3,034,191 + CCNA_02885 0.64 -1.1
3,034,191 + CCNA_02885 0.64 -1.2
3,034,191 + CCNA_02885 0.64 +0.9
3,034,271 - CCNA_02885 0.75 -0.4
3,034,293 - CCNA_02885 0.78 -1.5
3,034,338 + CCNA_02885 0.85 +0.1
3,034,367 + CCNA_02885 0.89 -0.8
3,034,375 - CCNA_02885 0.90 -0.2
3,034,375 - CCNA_02885 0.90 -0.7
3,034,375 - CCNA_02885 0.90 -0.2
3,034,382 - -1.3
3,034,395 + +0.4
3,034,451 - +0.0
3,034,455 - -1.1
3,034,474 + +2.6
3,034,482 - -2.0
3,034,482 - -0.1
3,034,482 - -1.9
3,034,487 + -1.5
3,034,487 - -0.3
3,034,487 - +0.9
3,034,495 - +0.5
3,034,496 + -2.0
3,034,496 + +0.6
3,034,504 - -0.2
3,034,515 + -0.8
3,034,515 + -0.7
3,034,537 - -2.0
3,034,555 + -0.5
3,034,572 + +0.8
3,034,580 - +0.3
3,034,580 - -0.3
3,034,599 + +0.3
3,034,599 + -1.9
3,034,607 - -1.1
3,034,686 + CCNA_02886 0.23 +0.6
3,034,718 - CCNA_02886 0.31 -0.2
3,034,718 - CCNA_02886 0.31 -0.8
3,034,752 - CCNA_02886 0.40 -1.5
3,034,752 - CCNA_02886 0.40 -0.7
3,034,752 - CCNA_02886 0.40 -0.5
3,034,752 - CCNA_02886 0.40 -0.2
3,034,759 + CCNA_02886 0.42 -0.2
3,034,767 - CCNA_02886 0.44 -0.7
3,034,782 + CCNA_02886 0.47 -0.2
3,034,816 + CCNA_02886 0.56 -0.7
3,034,826 + CCNA_02886 0.59 -0.5
3,034,869 + CCNA_02886 0.70 +0.1
3,034,877 - CCNA_02886 0.72 -0.4
3,034,877 - CCNA_02886 0.72 -0.5
3,034,877 - CCNA_02886 0.72 -0.8
3,034,877 - CCNA_02886 0.72 -1.4
3,034,991 - +0.9
3,035,083 - +0.5
3,035,083 - +1.0
3,035,133 - -0.8
3,035,164 + +0.4
3,035,180 + +0.0
3,035,188 - -1.5
3,035,206 + -0.7
3,035,206 + -1.2
3,035,206 + +0.4
3,035,206 + +1.4
3,035,206 + -1.9
3,035,230 + +0.1
3,035,259 - +0.4
3,035,261 + -2.1
3,035,292 - +1.6
3,035,309 + CCNA_02887 0.11 -0.8
3,035,309 + CCNA_02887 0.11 -0.7
3,035,309 + CCNA_02887 0.11 +1.0
3,035,312 - CCNA_02887 0.12 +1.1
3,035,312 - CCNA_02887 0.12 +0.7
3,035,317 - CCNA_02887 0.12 -0.3
3,035,319 + CCNA_02887 0.13 -1.3
3,035,329 + CCNA_02887 0.14 +1.0
3,035,329 + CCNA_02887 0.14 -0.6
3,035,337 - CCNA_02887 0.15 +2.6
3,035,352 + CCNA_02887 0.17 +0.1
3,035,352 - CCNA_02887 0.17 +1.0
3,035,357 + CCNA_02887 0.17 +0.1
3,035,360 - CCNA_02887 0.18 +0.3
3,035,372 + CCNA_02887 0.19 +1.1
3,035,375 - CCNA_02887 0.20 +0.2
3,035,379 + CCNA_02887 0.20 +0.7
3,035,379 + CCNA_02887 0.20 -0.8
3,035,379 + CCNA_02887 0.20 +1.0
3,035,379 + CCNA_02887 0.20 -2.0
3,035,379 + CCNA_02887 0.20 -1.1
3,035,379 + CCNA_02887 0.20 +0.5
3,035,379 + CCNA_02887 0.20 +0.3
3,035,387 - CCNA_02887 0.21 -2.2
3,035,387 - CCNA_02887 0.21 -0.1
3,035,387 - CCNA_02887 0.21 +1.3
3,035,387 - CCNA_02887 0.21 +1.0
3,035,387 - CCNA_02887 0.21 -1.4
3,035,387 - CCNA_02887 0.21 -0.5
3,035,387 - CCNA_02887 0.21 -0.8
3,035,387 - CCNA_02887 0.21 -1.1
3,035,387 - CCNA_02887 0.21 +2.0
3,035,399 + CCNA_02887 0.23 +0.6
3,035,400 + CCNA_02887 0.23 -0.8
3,035,407 - CCNA_02887 0.24 -1.4
3,035,417 - CCNA_02887 0.25 +1.6
3,035,433 - CCNA_02887 0.27 -0.5
3,035,447 + CCNA_02887 0.29 +0.0
3,035,464 + CCNA_02887 0.31 -1.7
3,035,464 + CCNA_02887 0.31 -0.5
3,035,466 - CCNA_02887 0.31 -1.1
3,035,475 + CCNA_02887 0.32 -0.7
3,035,475 + CCNA_02887 0.32 -2.0
3,035,475 + CCNA_02887 0.32 -0.2
3,035,475 + CCNA_02887 0.32 -1.8
3,035,482 - CCNA_02887 0.33 -1.5
3,035,483 - CCNA_02887 0.33 +1.0
3,035,483 - CCNA_02887 0.33 +0.5
3,035,483 - CCNA_02887 0.33 -0.5
3,035,483 - CCNA_02887 0.33 +1.3
3,035,486 + CCNA_02887 0.33 -0.5
3,035,491 + CCNA_02887 0.34 +1.5
3,035,493 - CCNA_02887 0.34 -2.2
3,035,493 - CCNA_02887 0.34 +1.4
3,035,540 + CCNA_02887 0.40 -0.2
3,035,540 + CCNA_02887 0.40 -1.6
3,035,548 - CCNA_02887 0.41 -1.7
3,035,553 - CCNA_02887 0.42 -0.7
3,035,562 + CCNA_02887 0.43 -0.6
3,035,593 - CCNA_02887 0.47 +0.0
3,035,598 - CCNA_02887 0.47 +0.1
3,035,603 - CCNA_02887 0.48 -0.8
3,035,619 + CCNA_02887 0.50 -1.2
3,035,627 - CCNA_02887 0.51 -0.8
3,035,627 - CCNA_02887 0.51 -1.1
3,035,631 + CCNA_02887 0.51 -0.1
3,035,631 + CCNA_02887 0.51 -0.4
3,035,639 - CCNA_02887 0.52 +1.3
3,035,641 + CCNA_02887 0.52 -0.3
3,035,721 + CCNA_02887 0.62 +0.2
3,035,768 - CCNA_02887 0.68 +0.1
3,035,775 + CCNA_02887 0.69 +1.4
3,035,775 + CCNA_02887 0.69 -0.9
3,035,775 + CCNA_02887 0.69 -2.1
3,035,785 + CCNA_02887 0.70 +1.3
3,035,799 - CCNA_02887 0.72 -2.2
3,035,799 - CCNA_02887 0.72 +1.3
3,035,799 - CCNA_02887 0.72 -0.5
3,035,815 - CCNA_02887 0.74 +0.3
3,035,835 + CCNA_02887 0.76 -1.4
3,035,843 - CCNA_02887 0.77 +0.6
3,035,849 + CCNA_02887 0.78 -0.2
3,035,849 + CCNA_02887 0.78 +0.8
3,035,849 + CCNA_02887 0.78 -1.5
3,035,854 + CCNA_02887 0.79 -1.8
3,035,857 - CCNA_02887 0.79 -0.3
3,035,857 - CCNA_02887 0.79 -1.4
3,035,857 - CCNA_02887 0.79 -1.0
3,035,857 - CCNA_02887 0.79 -1.5
3,035,857 - CCNA_02887 0.79 -0.2
3,035,857 - CCNA_02887 0.79 +0.8
3,035,920 + CCNA_02887 0.87 -2.0
3,035,961 + -0.4

Or see this region's nucleotide sequence