Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02884 and CCNA_02885 are separated by 109 nucleotides CCNA_02885 and CCNA_02886 are separated by 148 nucleotides CCNA_02886 and CCNA_02887 are separated by 229 nucleotides
CCNA_02884: CCNA_02884 - TetR-family transcriptional regulator, at 3,032,855 to 3,033,622
_02884
CCNA_02885: CCNA_02885 - isochorismatase family protein, at 3,033,732 to 3,034,448
_02885
CCNA_02886: CCNA_02886 - RutC-family pyrimidine utilization protein C, at 3,034,597 to 3,034,986
_02886
CCNA_02887: CCNA_02887 - hydrolase/acyltransferase family protein, at 3,035,216 to 3,036,025
_02887
Position (kb)
3034
3035 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3033.625 kb on - strand at 3033.640 kb on - strand at 3033.640 kb on - strand at 3033.651 kb on + strand at 3033.651 kb on + strand at 3033.752 kb on + strand at 3033.757 kb on + strand at 3033.760 kb on - strand at 3033.771 kb on - strand at 3033.785 kb on + strand at 3033.785 kb on + strand at 3033.890 kb on - strand, within CCNA_02885 at 3033.909 kb on - strand at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.920 kb on + strand, within CCNA_02885 at 3033.927 kb on + strand, within CCNA_02885 at 3033.928 kb on - strand, within CCNA_02885 at 3033.928 kb on - strand, within CCNA_02885 at 3033.928 kb on - strand, within CCNA_02885 at 3033.949 kb on - strand, within CCNA_02885 at 3034.037 kb on + strand, within CCNA_02885 at 3034.040 kb on - strand, within CCNA_02885 at 3034.045 kb on + strand, within CCNA_02885 at 3034.099 kb on + strand, within CCNA_02885 at 3034.107 kb on - strand, within CCNA_02885 at 3034.108 kb on + strand, within CCNA_02885 at 3034.108 kb on + strand, within CCNA_02885 at 3034.108 kb on + strand, within CCNA_02885 at 3034.116 kb on - strand, within CCNA_02885 at 3034.155 kb on - strand, within CCNA_02885 at 3034.165 kb on - strand, within CCNA_02885 at 3034.171 kb on + strand, within CCNA_02885 at 3034.179 kb on - strand, within CCNA_02885 at 3034.191 kb on + strand, within CCNA_02885 at 3034.191 kb on + strand, within CCNA_02885 at 3034.191 kb on + strand, within CCNA_02885 at 3034.191 kb on + strand, within CCNA_02885 at 3034.271 kb on - strand, within CCNA_02885 at 3034.293 kb on - strand, within CCNA_02885 at 3034.338 kb on + strand, within CCNA_02885 at 3034.367 kb on + strand, within CCNA_02885 at 3034.375 kb on - strand, within CCNA_02885 at 3034.375 kb on - strand, within CCNA_02885 at 3034.375 kb on - strand, within CCNA_02885 at 3034.382 kb on - strand at 3034.395 kb on + strand at 3034.451 kb on - strand at 3034.455 kb on - strand at 3034.474 kb on + strand at 3034.482 kb on - strand at 3034.482 kb on - strand at 3034.482 kb on - strand at 3034.487 kb on + strand at 3034.487 kb on - strand at 3034.487 kb on - strand at 3034.495 kb on - strand at 3034.496 kb on + strand at 3034.496 kb on + strand at 3034.504 kb on - strand at 3034.515 kb on + strand at 3034.515 kb on + strand at 3034.537 kb on - strand at 3034.555 kb on + strand at 3034.572 kb on + strand at 3034.580 kb on - strand at 3034.580 kb on - strand at 3034.599 kb on + strand at 3034.599 kb on + strand at 3034.607 kb on - strand at 3034.686 kb on + strand, within CCNA_02886 at 3034.718 kb on - strand, within CCNA_02886 at 3034.718 kb on - strand, within CCNA_02886 at 3034.752 kb on - strand, within CCNA_02886 at 3034.752 kb on - strand, within CCNA_02886 at 3034.752 kb on - strand, within CCNA_02886 at 3034.752 kb on - strand, within CCNA_02886 at 3034.759 kb on + strand, within CCNA_02886 at 3034.767 kb on - strand, within CCNA_02886 at 3034.782 kb on + strand, within CCNA_02886 at 3034.816 kb on + strand, within CCNA_02886 at 3034.826 kb on + strand, within CCNA_02886 at 3034.869 kb on + strand, within CCNA_02886 at 3034.877 kb on - strand, within CCNA_02886 at 3034.877 kb on - strand, within CCNA_02886 at 3034.877 kb on - strand, within CCNA_02886 at 3034.877 kb on - strand, within CCNA_02886 at 3034.991 kb on - strand at 3035.083 kb on - strand at 3035.083 kb on - strand at 3035.133 kb on - strand at 3035.164 kb on + strand at 3035.180 kb on + strand at 3035.188 kb on - strand at 3035.206 kb on + strand at 3035.206 kb on + strand at 3035.206 kb on + strand at 3035.206 kb on + strand at 3035.206 kb on + strand at 3035.230 kb on + strand at 3035.259 kb on - strand at 3035.261 kb on + strand at 3035.292 kb on - strand at 3035.309 kb on + strand, within CCNA_02887 at 3035.309 kb on + strand, within CCNA_02887 at 3035.309 kb on + strand, within CCNA_02887 at 3035.312 kb on - strand, within CCNA_02887 at 3035.312 kb on - strand, within CCNA_02887 at 3035.317 kb on - strand, within CCNA_02887 at 3035.319 kb on + strand, within CCNA_02887 at 3035.329 kb on + strand, within CCNA_02887 at 3035.329 kb on + strand, within CCNA_02887 at 3035.337 kb on - strand, within CCNA_02887 at 3035.352 kb on + strand, within CCNA_02887 at 3035.352 kb on - strand, within CCNA_02887 at 3035.357 kb on + strand, within CCNA_02887 at 3035.360 kb on - strand, within CCNA_02887 at 3035.372 kb on + strand, within CCNA_02887 at 3035.375 kb on - strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.379 kb on + strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.387 kb on - strand, within CCNA_02887 at 3035.399 kb on + strand, within CCNA_02887 at 3035.400 kb on + strand, within CCNA_02887 at 3035.407 kb on - strand, within CCNA_02887 at 3035.417 kb on - strand, within CCNA_02887 at 3035.433 kb on - strand, within CCNA_02887 at 3035.447 kb on + strand, within CCNA_02887 at 3035.464 kb on + strand, within CCNA_02887 at 3035.464 kb on + strand, within CCNA_02887 at 3035.466 kb on - strand, within CCNA_02887 at 3035.475 kb on + strand, within CCNA_02887 at 3035.475 kb on + strand, within CCNA_02887 at 3035.475 kb on + strand, within CCNA_02887 at 3035.475 kb on + strand, within CCNA_02887 at 3035.482 kb on - strand, within CCNA_02887 at 3035.483 kb on - strand, within CCNA_02887 at 3035.483 kb on - strand, within CCNA_02887 at 3035.483 kb on - strand, within CCNA_02887 at 3035.483 kb on - strand, within CCNA_02887 at 3035.486 kb on + strand, within CCNA_02887 at 3035.491 kb on + strand, within CCNA_02887 at 3035.493 kb on - strand, within CCNA_02887 at 3035.493 kb on - strand, within CCNA_02887 at 3035.540 kb on + strand, within CCNA_02887 at 3035.540 kb on + strand, within CCNA_02887 at 3035.548 kb on - strand, within CCNA_02887 at 3035.553 kb on - strand, within CCNA_02887 at 3035.562 kb on + strand, within CCNA_02887 at 3035.593 kb on - strand, within CCNA_02887 at 3035.598 kb on - strand, within CCNA_02887 at 3035.603 kb on - strand, within CCNA_02887 at 3035.619 kb on + strand, within CCNA_02887 at 3035.627 kb on - strand, within CCNA_02887 at 3035.627 kb on - strand, within CCNA_02887 at 3035.631 kb on + strand, within CCNA_02887 at 3035.631 kb on + strand, within CCNA_02887 at 3035.639 kb on - strand, within CCNA_02887 at 3035.641 kb on + strand, within CCNA_02887 at 3035.721 kb on + strand, within CCNA_02887 at 3035.768 kb on - strand, within CCNA_02887 at 3035.775 kb on + strand, within CCNA_02887 at 3035.775 kb on + strand, within CCNA_02887 at 3035.775 kb on + strand, within CCNA_02887 at 3035.785 kb on + strand, within CCNA_02887 at 3035.799 kb on - strand, within CCNA_02887 at 3035.799 kb on - strand, within CCNA_02887 at 3035.799 kb on - strand, within CCNA_02887 at 3035.815 kb on - strand, within CCNA_02887 at 3035.835 kb on + strand, within CCNA_02887 at 3035.843 kb on - strand, within CCNA_02887 at 3035.849 kb on + strand, within CCNA_02887 at 3035.849 kb on + strand, within CCNA_02887 at 3035.849 kb on + strand, within CCNA_02887 at 3035.854 kb on + strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.857 kb on - strand, within CCNA_02887 at 3035.920 kb on + strand, within CCNA_02887 at 3035.961 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,033,625 - +0.6 3,033,640 - +1.0 3,033,640 - -0.1 3,033,651 + +0.6 3,033,651 + +4.2 3,033,752 + -1.5 3,033,757 + +0.4 3,033,760 - +0.1 3,033,771 - +1.8 3,033,785 + +1.5 3,033,785 + +3.6 3,033,890 - CCNA_02885 0.22 -0.6 3,033,909 - +2.6 3,033,920 + CCNA_02885 0.26 -0.5 3,033,920 + CCNA_02885 0.26 -1.3 3,033,920 + CCNA_02885 0.26 +0.3 3,033,920 + CCNA_02885 0.26 +1.0 3,033,920 + CCNA_02885 0.26 -1.0 3,033,920 + CCNA_02885 0.26 +0.3 3,033,920 + CCNA_02885 0.26 +2.0 3,033,927 + CCNA_02885 0.27 +0.3 3,033,928 - CCNA_02885 0.27 -1.5 3,033,928 - CCNA_02885 0.27 -0.5 3,033,928 - CCNA_02885 0.27 -1.4 3,033,949 - CCNA_02885 0.30 -1.0 3,034,037 + CCNA_02885 0.43 +0.6 3,034,040 - CCNA_02885 0.43 +0.5 3,034,045 + CCNA_02885 0.44 -1.0 3,034,099 + CCNA_02885 0.51 -0.2 3,034,107 - CCNA_02885 0.52 -0.5 3,034,108 + CCNA_02885 0.52 -0.2 3,034,108 + CCNA_02885 0.52 -1.1 3,034,108 + CCNA_02885 0.52 -0.7 3,034,116 - CCNA_02885 0.54 -1.5 3,034,155 - CCNA_02885 0.59 -0.9 3,034,165 - CCNA_02885 0.60 -0.7 3,034,171 + CCNA_02885 0.61 -0.0 3,034,179 - CCNA_02885 0.62 -0.9 3,034,191 + CCNA_02885 0.64 -1.5 3,034,191 + CCNA_02885 0.64 -1.1 3,034,191 + CCNA_02885 0.64 -1.2 3,034,191 + CCNA_02885 0.64 +0.9 3,034,271 - CCNA_02885 0.75 -0.4 3,034,293 - CCNA_02885 0.78 -1.5 3,034,338 + CCNA_02885 0.85 +0.1 3,034,367 + CCNA_02885 0.89 -0.8 3,034,375 - CCNA_02885 0.90 -0.2 3,034,375 - CCNA_02885 0.90 -0.7 3,034,375 - CCNA_02885 0.90 -0.2 3,034,382 - -1.3 3,034,395 + +0.4 3,034,451 - +0.0 3,034,455 - -1.1 3,034,474 + +2.6 3,034,482 - -2.0 3,034,482 - -0.1 3,034,482 - -1.9 3,034,487 + -1.5 3,034,487 - -0.3 3,034,487 - +0.9 3,034,495 - +0.5 3,034,496 + -2.0 3,034,496 + +0.6 3,034,504 - -0.2 3,034,515 + -0.8 3,034,515 + -0.7 3,034,537 - -2.0 3,034,555 + -0.5 3,034,572 + +0.8 3,034,580 - +0.3 3,034,580 - -0.3 3,034,599 + +0.3 3,034,599 + -1.9 3,034,607 - -1.1 3,034,686 + CCNA_02886 0.23 +0.6 3,034,718 - CCNA_02886 0.31 -0.2 3,034,718 - CCNA_02886 0.31 -0.8 3,034,752 - CCNA_02886 0.40 -1.5 3,034,752 - CCNA_02886 0.40 -0.7 3,034,752 - CCNA_02886 0.40 -0.5 3,034,752 - CCNA_02886 0.40 -0.2 3,034,759 + CCNA_02886 0.42 -0.2 3,034,767 - CCNA_02886 0.44 -0.7 3,034,782 + CCNA_02886 0.47 -0.2 3,034,816 + CCNA_02886 0.56 -0.7 3,034,826 + CCNA_02886 0.59 -0.5 3,034,869 + CCNA_02886 0.70 +0.1 3,034,877 - CCNA_02886 0.72 -0.4 3,034,877 - CCNA_02886 0.72 -0.5 3,034,877 - CCNA_02886 0.72 -0.8 3,034,877 - CCNA_02886 0.72 -1.4 3,034,991 - +0.9 3,035,083 - +0.5 3,035,083 - +1.0 3,035,133 - -0.8 3,035,164 + +0.4 3,035,180 + +0.0 3,035,188 - -1.5 3,035,206 + -0.7 3,035,206 + -1.2 3,035,206 + +0.4 3,035,206 + +1.4 3,035,206 + -1.9 3,035,230 + +0.1 3,035,259 - +0.4 3,035,261 + -2.1 3,035,292 - +1.6 3,035,309 + CCNA_02887 0.11 -0.8 3,035,309 + CCNA_02887 0.11 -0.7 3,035,309 + CCNA_02887 0.11 +1.0 3,035,312 - CCNA_02887 0.12 +1.1 3,035,312 - CCNA_02887 0.12 +0.7 3,035,317 - CCNA_02887 0.12 -0.3 3,035,319 + CCNA_02887 0.13 -1.3 3,035,329 + CCNA_02887 0.14 +1.0 3,035,329 + CCNA_02887 0.14 -0.6 3,035,337 - CCNA_02887 0.15 +2.6 3,035,352 + CCNA_02887 0.17 +0.1 3,035,352 - CCNA_02887 0.17 +1.0 3,035,357 + CCNA_02887 0.17 +0.1 3,035,360 - CCNA_02887 0.18 +0.3 3,035,372 + CCNA_02887 0.19 +1.1 3,035,375 - CCNA_02887 0.20 +0.2 3,035,379 + CCNA_02887 0.20 +0.7 3,035,379 + CCNA_02887 0.20 -0.8 3,035,379 + CCNA_02887 0.20 +1.0 3,035,379 + CCNA_02887 0.20 -2.0 3,035,379 + CCNA_02887 0.20 -1.1 3,035,379 + CCNA_02887 0.20 +0.5 3,035,379 + CCNA_02887 0.20 +0.3 3,035,387 - CCNA_02887 0.21 -2.2 3,035,387 - CCNA_02887 0.21 -0.1 3,035,387 - CCNA_02887 0.21 +1.3 3,035,387 - CCNA_02887 0.21 +1.0 3,035,387 - CCNA_02887 0.21 -1.4 3,035,387 - CCNA_02887 0.21 -0.5 3,035,387 - CCNA_02887 0.21 -0.8 3,035,387 - CCNA_02887 0.21 -1.1 3,035,387 - CCNA_02887 0.21 +2.0 3,035,399 + CCNA_02887 0.23 +0.6 3,035,400 + CCNA_02887 0.23 -0.8 3,035,407 - CCNA_02887 0.24 -1.4 3,035,417 - CCNA_02887 0.25 +1.6 3,035,433 - CCNA_02887 0.27 -0.5 3,035,447 + CCNA_02887 0.29 +0.0 3,035,464 + CCNA_02887 0.31 -1.7 3,035,464 + CCNA_02887 0.31 -0.5 3,035,466 - CCNA_02887 0.31 -1.1 3,035,475 + CCNA_02887 0.32 -0.7 3,035,475 + CCNA_02887 0.32 -2.0 3,035,475 + CCNA_02887 0.32 -0.2 3,035,475 + CCNA_02887 0.32 -1.8 3,035,482 - CCNA_02887 0.33 -1.5 3,035,483 - CCNA_02887 0.33 +1.0 3,035,483 - CCNA_02887 0.33 +0.5 3,035,483 - CCNA_02887 0.33 -0.5 3,035,483 - CCNA_02887 0.33 +1.3 3,035,486 + CCNA_02887 0.33 -0.5 3,035,491 + CCNA_02887 0.34 +1.5 3,035,493 - CCNA_02887 0.34 -2.2 3,035,493 - CCNA_02887 0.34 +1.4 3,035,540 + CCNA_02887 0.40 -0.2 3,035,540 + CCNA_02887 0.40 -1.6 3,035,548 - CCNA_02887 0.41 -1.7 3,035,553 - CCNA_02887 0.42 -0.7 3,035,562 + CCNA_02887 0.43 -0.6 3,035,593 - CCNA_02887 0.47 +0.0 3,035,598 - CCNA_02887 0.47 +0.1 3,035,603 - CCNA_02887 0.48 -0.8 3,035,619 + CCNA_02887 0.50 -1.2 3,035,627 - CCNA_02887 0.51 -0.8 3,035,627 - CCNA_02887 0.51 -1.1 3,035,631 + CCNA_02887 0.51 -0.1 3,035,631 + CCNA_02887 0.51 -0.4 3,035,639 - CCNA_02887 0.52 +1.3 3,035,641 + CCNA_02887 0.52 -0.3 3,035,721 + CCNA_02887 0.62 +0.2 3,035,768 - CCNA_02887 0.68 +0.1 3,035,775 + CCNA_02887 0.69 +1.4 3,035,775 + CCNA_02887 0.69 -0.9 3,035,775 + CCNA_02887 0.69 -2.1 3,035,785 + CCNA_02887 0.70 +1.3 3,035,799 - CCNA_02887 0.72 -2.2 3,035,799 - CCNA_02887 0.72 +1.3 3,035,799 - CCNA_02887 0.72 -0.5 3,035,815 - CCNA_02887 0.74 +0.3 3,035,835 + CCNA_02887 0.76 -1.4 3,035,843 - CCNA_02887 0.77 +0.6 3,035,849 + CCNA_02887 0.78 -0.2 3,035,849 + CCNA_02887 0.78 +0.8 3,035,849 + CCNA_02887 0.78 -1.5 3,035,854 + CCNA_02887 0.79 -1.8 3,035,857 - CCNA_02887 0.79 -0.3 3,035,857 - CCNA_02887 0.79 -1.4 3,035,857 - CCNA_02887 0.79 -1.0 3,035,857 - CCNA_02887 0.79 -1.5 3,035,857 - CCNA_02887 0.79 -0.2 3,035,857 - CCNA_02887 0.79 +0.8 3,035,920 + CCNA_02887 0.87 -2.0 3,035,961 + -0.4
Or see this region's nucleotide sequence