Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02794 and CCNA_02795 overlap by 4 nucleotides CCNA_02795 and CCNA_02796 are separated by 64 nucleotides CCNA_02796 and CCNA_02797 are separated by 111 nucleotides CCNA_02797 and CCNA_02798 are separated by 67 nucleotides
CCNA_02794: CCNA_02794 - asparagine synthetase C-terminal domain protein, at 2,953,501 to 2,955,258
_02794
CCNA_02795: CCNA_02795 - transglutaminase-like superfamily protein, at 2,955,255 to 2,955,908
_02795
CCNA_02796: CCNA_02796 - hypothetical protein, at 2,955,973 to 2,956,107
_02796
CCNA_02797: CCNA_02797 - hypothetical protein, at 2,956,219 to 2,956,338
_02797
CCNA_02798: CCNA_02798 - GntR-family transcriptional regulator, at 2,956,406 to 2,957,080
_02798
Position (kb)
2956
2957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2955.227 kb on + strand at 2955.227 kb on + strand at 2955.235 kb on - strand at 2955.240 kb on - strand at 2955.240 kb on - strand at 2955.240 kb on - strand at 2955.341 kb on - strand, within CCNA_02795 at 2955.465 kb on - strand, within CCNA_02795 at 2955.467 kb on + strand, within CCNA_02795 at 2955.467 kb on + strand, within CCNA_02795 at 2955.475 kb on - strand, within CCNA_02795 at 2955.475 kb on - strand, within CCNA_02795 at 2955.496 kb on + strand, within CCNA_02795 at 2955.496 kb on + strand, within CCNA_02795 at 2955.496 kb on + strand, within CCNA_02795 at 2955.496 kb on + strand, within CCNA_02795 at 2955.497 kb on - strand, within CCNA_02795 at 2955.497 kb on - strand, within CCNA_02795 at 2955.504 kb on - strand, within CCNA_02795 at 2955.504 kb on - strand, within CCNA_02795 at 2955.504 kb on - strand, within CCNA_02795 at 2955.540 kb on + strand, within CCNA_02795 at 2955.548 kb on - strand, within CCNA_02795 at 2955.556 kb on + strand, within CCNA_02795 at 2955.561 kb on - strand, within CCNA_02795 at 2955.566 kb on + strand, within CCNA_02795 at 2955.566 kb on + strand, within CCNA_02795 at 2955.566 kb on + strand, within CCNA_02795 at 2955.580 kb on - strand, within CCNA_02795 at 2955.612 kb on - strand, within CCNA_02795 at 2955.638 kb on + strand, within CCNA_02795 at 2955.643 kb on + strand, within CCNA_02795 at 2955.665 kb on + strand, within CCNA_02795 at 2955.665 kb on + strand, within CCNA_02795 at 2955.711 kb on - strand, within CCNA_02795 at 2955.712 kb on - strand, within CCNA_02795 at 2955.715 kb on + strand, within CCNA_02795 at 2955.715 kb on + strand, within CCNA_02795 at 2955.718 kb on - strand at 2955.720 kb on + strand, within CCNA_02795 at 2955.723 kb on - strand, within CCNA_02795 at 2955.725 kb on + strand, within CCNA_02795 at 2955.728 kb on - strand, within CCNA_02795 at 2955.733 kb on - strand, within CCNA_02795 at 2955.748 kb on - strand, within CCNA_02795 at 2955.766 kb on + strand, within CCNA_02795 at 2955.774 kb on - strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.781 kb on + strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.789 kb on - strand, within CCNA_02795 at 2955.876 kb on - strand at 2955.897 kb on + strand at 2955.897 kb on + strand at 2955.905 kb on - strand at 2955.905 kb on - strand at 2955.905 kb on - strand at 2955.918 kb on - strand at 2955.971 kb on + strand at 2955.976 kb on + strand at 2955.979 kb on - strand at 2955.979 kb on - strand at 2956.033 kb on + strand, within CCNA_02796 at 2956.038 kb on + strand, within CCNA_02796 at 2956.041 kb on - strand, within CCNA_02796 at 2956.041 kb on - strand, within CCNA_02796 at 2956.060 kb on + strand, within CCNA_02796 at 2956.073 kb on + strand, within CCNA_02796 at 2956.081 kb on - strand, within CCNA_02796 at 2956.095 kb on - strand at 2956.095 kb on - strand at 2956.102 kb on + strand at 2956.110 kb on + strand at 2956.117 kb on - strand at 2956.153 kb on - strand at 2956.222 kb on + strand at 2956.224 kb on - strand at 2956.226 kb on + strand at 2956.226 kb on + strand at 2956.226 kb on + strand at 2956.234 kb on - strand, within CCNA_02797 at 2956.234 kb on - strand, within CCNA_02797 at 2956.234 kb on - strand, within CCNA_02797 at 2956.234 kb on - strand, within CCNA_02797 at 2956.239 kb on - strand, within CCNA_02797 at 2956.250 kb on + strand, within CCNA_02797 at 2956.279 kb on + strand, within CCNA_02797 at 2956.285 kb on + strand, within CCNA_02797 at 2956.287 kb on - strand, within CCNA_02797 at 2956.327 kb on + strand at 2956.335 kb on - strand at 2956.376 kb on + strand at 2956.384 kb on - strand at 2956.459 kb on + strand at 2956.467 kb on - strand at 2956.467 kb on - strand at 2956.467 kb on - strand at 2956.491 kb on - strand, within CCNA_02798 at 2956.501 kb on + strand, within CCNA_02798 at 2956.502 kb on + strand, within CCNA_02798 at 2956.505 kb on - strand, within CCNA_02798 at 2956.507 kb on + strand, within CCNA_02798 at 2956.508 kb on + strand, within CCNA_02798 at 2956.508 kb on - strand, within CCNA_02798 at 2956.508 kb on - strand, within CCNA_02798 at 2956.508 kb on - strand, within CCNA_02798 at 2956.510 kb on - strand, within CCNA_02798 at 2956.515 kb on - strand, within CCNA_02798 at 2956.544 kb on + strand, within CCNA_02798 at 2956.569 kb on + strand, within CCNA_02798 at 2956.590 kb on - strand, within CCNA_02798 at 2956.715 kb on + strand, within CCNA_02798 at 2956.741 kb on + strand, within CCNA_02798 at 2956.752 kb on + strand, within CCNA_02798 at 2956.760 kb on - strand, within CCNA_02798 at 2956.806 kb on + strand, within CCNA_02798 at 2956.807 kb on + strand, within CCNA_02798 at 2956.822 kb on + strand, within CCNA_02798 at 2956.822 kb on + strand, within CCNA_02798 at 2956.848 kb on - strand, within CCNA_02798 at 2956.850 kb on + strand, within CCNA_02798 at 2956.853 kb on - strand, within CCNA_02798 at 2956.866 kb on + strand, within CCNA_02798 at 2956.866 kb on + strand, within CCNA_02798 at 2956.866 kb on + strand, within CCNA_02798 at 2956.873 kb on - strand, within CCNA_02798 at 2956.874 kb on - strand, within CCNA_02798 at 2956.902 kb on - strand, within CCNA_02798 at 2956.912 kb on - strand, within CCNA_02798 at 2956.921 kb on - strand, within CCNA_02798 at 2956.945 kb on + strand, within CCNA_02798 at 2956.946 kb on + strand, within CCNA_02798 at 2956.946 kb on + strand, within CCNA_02798 at 2956.956 kb on + strand, within CCNA_02798 at 2956.957 kb on - strand, within CCNA_02798 at 2956.959 kb on - strand, within CCNA_02798 at 2956.959 kb on - strand, within CCNA_02798 at 2956.959 kb on - strand, within CCNA_02798 at 2956.959 kb on - strand, within CCNA_02798 at 2956.978 kb on + strand, within CCNA_02798 at 2956.978 kb on + strand, within CCNA_02798 at 2957.001 kb on - strand, within CCNA_02798 at 2957.060 kb on + strand at 2957.075 kb on - strand at 2957.075 kb on - strand at 2957.080 kb on - strand at 2957.102 kb on - strand at 2957.115 kb on + strand at 2957.146 kb on + strand at 2957.161 kb on + strand at 2957.195 kb on + strand at 2957.197 kb on + strand at 2957.203 kb on - strand at 2957.203 kb on - strand at 2957.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,955,227 + +0.0 2,955,227 + -0.2 2,955,235 - +0.8 2,955,240 - -0.1 2,955,240 - -0.3 2,955,240 - -1.6 2,955,341 - CCNA_02795 0.13 -0.1 2,955,465 - CCNA_02795 0.32 +0.1 2,955,467 + CCNA_02795 0.32 +0.0 2,955,467 + CCNA_02795 0.32 +0.4 2,955,475 - CCNA_02795 0.34 -0.1 2,955,475 - CCNA_02795 0.34 +1.4 2,955,496 + CCNA_02795 0.37 +0.4 2,955,496 + CCNA_02795 0.37 +0.3 2,955,496 + CCNA_02795 0.37 +2.0 2,955,496 + CCNA_02795 0.37 +2.6 2,955,497 - CCNA_02795 0.37 -0.3 2,955,497 - CCNA_02795 0.37 -1.1 2,955,504 - CCNA_02795 0.38 +1.7 2,955,504 - CCNA_02795 0.38 +0.0 2,955,504 - CCNA_02795 0.38 -0.7 2,955,540 + CCNA_02795 0.44 -1.3 2,955,548 - CCNA_02795 0.45 -1.1 2,955,556 + CCNA_02795 0.46 +0.3 2,955,561 - CCNA_02795 0.47 -1.6 2,955,566 + CCNA_02795 0.48 -1.7 2,955,566 + CCNA_02795 0.48 -1.9 2,955,566 + CCNA_02795 0.48 -2.1 2,955,580 - CCNA_02795 0.50 +1.0 2,955,612 - CCNA_02795 0.55 +0.0 2,955,638 + CCNA_02795 0.59 -2.0 2,955,643 + CCNA_02795 0.59 -2.9 2,955,665 + CCNA_02795 0.63 -1.8 2,955,665 + CCNA_02795 0.63 +0.2 2,955,711 - CCNA_02795 0.70 -0.4 2,955,712 - CCNA_02795 0.70 -1.4 2,955,715 + CCNA_02795 0.70 +1.0 2,955,715 + CCNA_02795 0.70 -0.4 2,955,718 - +3.6 2,955,720 + CCNA_02795 0.71 +0.4 2,955,723 - CCNA_02795 0.72 -0.6 2,955,725 + CCNA_02795 0.72 -1.1 2,955,728 - CCNA_02795 0.72 +0.0 2,955,733 - CCNA_02795 0.73 +0.6 2,955,748 - CCNA_02795 0.75 -2.3 2,955,766 + CCNA_02795 0.78 +1.0 2,955,774 - CCNA_02795 0.79 -0.8 2,955,781 + CCNA_02795 0.80 +0.6 2,955,781 + CCNA_02795 0.80 -1.3 2,955,781 + CCNA_02795 0.80 +0.2 2,955,781 + CCNA_02795 0.80 -1.4 2,955,781 + CCNA_02795 0.80 -1.6 2,955,781 + CCNA_02795 0.80 -1.1 2,955,781 + CCNA_02795 0.80 -1.0 2,955,789 - CCNA_02795 0.82 +0.6 2,955,789 - CCNA_02795 0.82 -0.2 2,955,789 - CCNA_02795 0.82 +0.0 2,955,789 - CCNA_02795 0.82 -1.1 2,955,789 - CCNA_02795 0.82 +0.0 2,955,789 - CCNA_02795 0.82 +1.3 2,955,876 - +0.0 2,955,897 + +0.8 2,955,897 + -1.5 2,955,905 - +1.0 2,955,905 - -0.8 2,955,905 - -0.7 2,955,918 - -0.6 2,955,971 + -0.5 2,955,976 + -0.8 2,955,979 - +0.6 2,955,979 - -0.7 2,956,033 + CCNA_02796 0.44 -1.1 2,956,038 + CCNA_02796 0.48 -0.9 2,956,041 - CCNA_02796 0.50 -1.6 2,956,041 - CCNA_02796 0.50 +0.5 2,956,060 + CCNA_02796 0.64 -1.0 2,956,073 + CCNA_02796 0.74 +0.0 2,956,081 - CCNA_02796 0.80 +0.6 2,956,095 - +0.3 2,956,095 - -1.3 2,956,102 + +1.6 2,956,110 + +0.3 2,956,117 - +0.6 2,956,153 - +0.0 2,956,222 + -0.2 2,956,224 - +0.6 2,956,226 + -0.2 2,956,226 + +1.2 2,956,226 + +1.0 2,956,234 - CCNA_02797 0.12 -0.6 2,956,234 - CCNA_02797 0.12 +0.4 2,956,234 - CCNA_02797 0.12 -1.2 2,956,234 - CCNA_02797 0.12 -0.3 2,956,239 - CCNA_02797 0.17 -1.8 2,956,250 + CCNA_02797 0.26 +0.1 2,956,279 + CCNA_02797 0.50 +0.2 2,956,285 + CCNA_02797 0.55 -1.6 2,956,287 - CCNA_02797 0.57 -0.1 2,956,327 + -1.4 2,956,335 - -0.8 2,956,376 + +0.6 2,956,384 - -0.5 2,956,459 + +0.7 2,956,467 - -0.2 2,956,467 - -1.2 2,956,467 - -0.4 2,956,491 - CCNA_02798 0.13 +2.2 2,956,501 + CCNA_02798 0.14 -1.2 2,956,502 + CCNA_02798 0.14 +1.8 2,956,505 - CCNA_02798 0.15 +1.6 2,956,507 + CCNA_02798 0.15 +2.2 2,956,508 + CCNA_02798 0.15 -0.9 2,956,508 - CCNA_02798 0.15 +0.6 2,956,508 - CCNA_02798 0.15 -2.1 2,956,508 - CCNA_02798 0.15 -0.2 2,956,510 - CCNA_02798 0.15 -1.0 2,956,515 - CCNA_02798 0.16 -2.2 2,956,544 + CCNA_02798 0.20 -1.9 2,956,569 + CCNA_02798 0.24 -0.6 2,956,590 - CCNA_02798 0.27 -0.7 2,956,715 + CCNA_02798 0.46 +0.1 2,956,741 + CCNA_02798 0.50 +1.0 2,956,752 + CCNA_02798 0.51 -0.3 2,956,760 - CCNA_02798 0.52 -0.8 2,956,806 + CCNA_02798 0.59 -1.7 2,956,807 + CCNA_02798 0.59 -1.3 2,956,822 + CCNA_02798 0.62 +0.6 2,956,822 + CCNA_02798 0.62 -1.7 2,956,848 - CCNA_02798 0.65 -0.4 2,956,850 + CCNA_02798 0.66 -1.3 2,956,853 - CCNA_02798 0.66 +0.6 2,956,866 + CCNA_02798 0.68 +0.2 2,956,866 + CCNA_02798 0.68 -1.7 2,956,866 + CCNA_02798 0.68 +0.2 2,956,873 - CCNA_02798 0.69 +1.7 2,956,874 - CCNA_02798 0.69 -0.6 2,956,902 - CCNA_02798 0.73 +1.1 2,956,912 - CCNA_02798 0.75 -1.4 2,956,921 - CCNA_02798 0.76 +1.2 2,956,945 + CCNA_02798 0.80 -1.2 2,956,946 + CCNA_02798 0.80 -0.1 2,956,946 + CCNA_02798 0.80 +0.8 2,956,956 + CCNA_02798 0.81 -1.2 2,956,957 - CCNA_02798 0.82 -0.3 2,956,959 - CCNA_02798 0.82 +0.3 2,956,959 - CCNA_02798 0.82 +0.0 2,956,959 - CCNA_02798 0.82 -2.1 2,956,959 - CCNA_02798 0.82 -1.6 2,956,978 + CCNA_02798 0.85 +1.2 2,956,978 + CCNA_02798 0.85 -0.3 2,957,001 - CCNA_02798 0.88 -0.9 2,957,060 + +0.8 2,957,075 - +0.1 2,957,075 - +1.6 2,957,080 - -1.4 2,957,102 - -0.7 2,957,115 + -1.5 2,957,146 + -2.3 2,957,161 + -1.0 2,957,195 + -0.3 2,957,197 + -1.0 2,957,203 - -0.6 2,957,203 - -0.7 2,957,327 - -0.5
Or see this region's nucleotide sequence