Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02763 and CCNA_02764 are separated by 31 nucleotides CCNA_02764 and CCNA_02765 are separated by 51 nucleotides CCNA_02765 and CCNA_02766 overlap by 4 nucleotides CCNA_02766 and CCNA_02767 are separated by 11 nucleotides
CCNA_02763: CCNA_02763 - bacteriophage P4 integrase, at 2,924,942 to 2,926,183
_02763
CCNA_02764: CCNA_02764 - hypothetical protein, at 2,926,215 to 2,926,454
_02764
CCNA_02765: CCNA_02765 - hypothetical protein, at 2,926,506 to 2,926,889
_02765
CCNA_02766: CCNA_02766 - hypothetical protein, at 2,926,886 to 2,927,164
_02766
CCNA_02767: CCNA_02767 - conjugal transfer protein TrbI, at 2,927,176 to 2,928,432
_02767
Position (kb)
2926
2927 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2925.230 kb on - strand, within CCNA_02763 at 2925.247 kb on + strand, within CCNA_02763 at 2925.297 kb on - strand, within CCNA_02763 at 2925.439 kb on + strand, within CCNA_02763 at 2925.439 kb on + strand, within CCNA_02763 at 2925.439 kb on + strand, within CCNA_02763 at 2925.439 kb on + strand, within CCNA_02763 at 2925.447 kb on - strand, within CCNA_02763 at 2925.447 kb on - strand, within CCNA_02763 at 2925.447 kb on - strand, within CCNA_02763 at 2925.459 kb on + strand, within CCNA_02763 at 2925.462 kb on - strand, within CCNA_02763 at 2925.466 kb on + strand at 2925.469 kb on - strand, within CCNA_02763 at 2925.474 kb on - strand, within CCNA_02763 at 2925.476 kb on + strand, within CCNA_02763 at 2925.476 kb on + strand, within CCNA_02763 at 2925.476 kb on + strand, within CCNA_02763 at 2925.490 kb on + strand, within CCNA_02763 at 2925.531 kb on + strand, within CCNA_02763 at 2925.531 kb on + strand, within CCNA_02763 at 2925.539 kb on - strand, within CCNA_02763 at 2925.622 kb on + strand, within CCNA_02763 at 2925.630 kb on - strand, within CCNA_02763 at 2925.630 kb on - strand, within CCNA_02763 at 2925.633 kb on + strand, within CCNA_02763 at 2925.643 kb on - strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.665 kb on + strand, within CCNA_02763 at 2925.668 kb on - strand, within CCNA_02763 at 2925.670 kb on + strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.673 kb on - strand, within CCNA_02763 at 2925.745 kb on - strand, within CCNA_02763 at 2925.750 kb on + strand, within CCNA_02763 at 2925.750 kb on + strand, within CCNA_02763 at 2925.760 kb on + strand, within CCNA_02763 at 2925.768 kb on - strand, within CCNA_02763 at 2925.769 kb on - strand, within CCNA_02763 at 2925.801 kb on + strand, within CCNA_02763 at 2925.802 kb on - strand, within CCNA_02763 at 2925.818 kb on - strand, within CCNA_02763 at 2925.887 kb on - strand, within CCNA_02763 at 2925.889 kb on + strand, within CCNA_02763 at 2925.905 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2925.977 kb on - strand, within CCNA_02763 at 2926.009 kb on + strand, within CCNA_02763 at 2926.053 kb on - strand, within CCNA_02763 at 2926.063 kb on - strand at 2926.071 kb on - strand at 2926.126 kb on + strand at 2926.134 kb on + strand at 2926.134 kb on + strand at 2926.142 kb on - strand at 2926.173 kb on - strand at 2926.184 kb on + strand at 2926.184 kb on + strand at 2926.187 kb on - strand at 2926.189 kb on + strand at 2926.192 kb on - strand at 2926.197 kb on - strand at 2926.197 kb on - strand at 2926.207 kb on - strand at 2926.213 kb on + strand at 2926.221 kb on - strand at 2926.221 kb on - strand at 2926.221 kb on - strand at 2926.221 kb on - strand at 2926.221 kb on - strand at 2926.221 kb on - strand at 2926.226 kb on - strand at 2926.248 kb on - strand, within CCNA_02764 at 2926.257 kb on - strand, within CCNA_02764 at 2926.257 kb on - strand, within CCNA_02764 at 2926.291 kb on - strand, within CCNA_02764 at 2926.291 kb on - strand, within CCNA_02764 at 2926.318 kb on + strand, within CCNA_02764 at 2926.323 kb on + strand, within CCNA_02764 at 2926.351 kb on + strand at 2926.361 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.379 kb on + strand, within CCNA_02764 at 2926.387 kb on - strand, within CCNA_02764 at 2926.387 kb on - strand, within CCNA_02764 at 2926.387 kb on - strand, within CCNA_02764 at 2926.387 kb on - strand, within CCNA_02764 at 2926.466 kb on + strand at 2926.466 kb on - strand at 2926.497 kb on + strand at 2926.503 kb on + strand at 2926.511 kb on - strand at 2926.511 kb on - strand at 2926.511 kb on - strand at 2926.548 kb on + strand, within CCNA_02765 at 2926.569 kb on - strand, within CCNA_02765 at 2926.616 kb on - strand, within CCNA_02765 at 2926.638 kb on - strand, within CCNA_02765 at 2926.638 kb on - strand, within CCNA_02765 at 2926.658 kb on + strand, within CCNA_02765 at 2926.659 kb on + strand, within CCNA_02765 at 2926.667 kb on - strand, within CCNA_02765 at 2926.667 kb on - strand, within CCNA_02765 at 2926.719 kb on - strand, within CCNA_02765 at 2926.794 kb on + strand, within CCNA_02765 at 2926.807 kb on + strand, within CCNA_02765 at 2926.810 kb on - strand, within CCNA_02765 at 2926.831 kb on + strand, within CCNA_02765 at 2926.854 kb on - strand at 2926.866 kb on - strand at 2926.867 kb on - strand at 2926.890 kb on + strand at 2926.890 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.906 kb on + strand at 2926.919 kb on - strand, within CCNA_02766 at 2926.929 kb on - strand, within CCNA_02766 at 2926.929 kb on - strand, within CCNA_02766 at 2926.936 kb on - strand, within CCNA_02766 at 2926.945 kb on + strand, within CCNA_02766 at 2926.976 kb on - strand, within CCNA_02766 at 2926.997 kb on - strand, within CCNA_02766 at 2927.041 kb on - strand, within CCNA_02766 at 2927.041 kb on - strand, within CCNA_02766 at 2927.046 kb on - strand, within CCNA_02766 at 2927.070 kb on + strand, within CCNA_02766 at 2927.092 kb on - strand, within CCNA_02766 at 2927.156 kb on - strand at 2927.157 kb on - strand at 2927.173 kb on + strand at 2927.173 kb on + strand at 2927.181 kb on - strand at 2927.181 kb on - strand at 2927.184 kb on - strand at 2927.209 kb on - strand at 2927.239 kb on - strand at 2927.239 kb on - strand at 2927.249 kb on - strand at 2927.261 kb on - strand at 2927.296 kb on + strand at 2927.338 kb on + strand, within CCNA_02767 at 2927.363 kb on + strand, within CCNA_02767 at 2927.365 kb on + strand, within CCNA_02767 at 2927.382 kb on + strand, within CCNA_02767 at 2927.390 kb on - strand, within CCNA_02767 at 2927.390 kb on - strand, within CCNA_02767 at 2927.390 kb on - strand, within CCNA_02767 at 2927.393 kb on + strand, within CCNA_02767 at 2927.393 kb on + strand, within CCNA_02767 at 2927.394 kb on - strand, within CCNA_02767 at 2927.400 kb on - strand, within CCNA_02767 at 2927.401 kb on - strand, within CCNA_02767 at 2927.401 kb on - strand, within CCNA_02767 at 2927.401 kb on - strand, within CCNA_02767 at 2927.402 kb on + strand, within CCNA_02767 at 2927.408 kb on + strand, within CCNA_02767 at 2927.408 kb on + strand, within CCNA_02767 at 2927.408 kb on + strand, within CCNA_02767 at 2927.416 kb on - strand, within CCNA_02767 at 2927.416 kb on - strand, within CCNA_02767 at 2927.416 kb on - strand, within CCNA_02767 at 2927.416 kb on - strand, within CCNA_02767 at 2927.416 kb on - strand, within CCNA_02767 at 2927.418 kb on + strand, within CCNA_02767 at 2927.426 kb on - strand, within CCNA_02767 at 2927.426 kb on - strand, within CCNA_02767 at 2927.426 kb on - strand, within CCNA_02767 at 2927.426 kb on - strand, within CCNA_02767
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,925,230 - CCNA_02763 0.23 -1.0 2,925,247 + CCNA_02763 0.25 +0.6 2,925,297 - CCNA_02763 0.29 +0.0 2,925,439 + CCNA_02763 0.40 +0.8 2,925,439 + CCNA_02763 0.40 -0.6 2,925,439 + CCNA_02763 0.40 -0.3 2,925,439 + CCNA_02763 0.40 +1.9 2,925,447 - CCNA_02763 0.41 -2.2 2,925,447 - CCNA_02763 0.41 +1.2 2,925,447 - CCNA_02763 0.41 -0.9 2,925,459 + CCNA_02763 0.42 -0.2 2,925,462 - CCNA_02763 0.42 +0.4 2,925,466 + +2.6 2,925,469 - CCNA_02763 0.42 +1.0 2,925,474 - CCNA_02763 0.43 +0.3 2,925,476 + CCNA_02763 0.43 -1.3 2,925,476 + CCNA_02763 0.43 -0.4 2,925,476 + CCNA_02763 0.43 +0.6 2,925,490 + CCNA_02763 0.44 -0.9 2,925,531 + CCNA_02763 0.47 -0.9 2,925,531 + CCNA_02763 0.47 +0.6 2,925,539 - CCNA_02763 0.48 -0.9 2,925,622 + CCNA_02763 0.55 +0.4 2,925,630 - CCNA_02763 0.55 -0.1 2,925,630 - CCNA_02763 0.55 -2.2 2,925,633 + CCNA_02763 0.56 -1.0 2,925,643 - CCNA_02763 0.56 -0.2 2,925,665 + CCNA_02763 0.58 +2.0 2,925,665 + CCNA_02763 0.58 -0.4 2,925,665 + CCNA_02763 0.58 +1.6 2,925,665 + CCNA_02763 0.58 +0.1 2,925,665 + CCNA_02763 0.58 +2.0 2,925,665 + CCNA_02763 0.58 -0.7 2,925,665 + CCNA_02763 0.58 -0.9 2,925,668 - CCNA_02763 0.58 -0.8 2,925,670 + CCNA_02763 0.59 -2.5 2,925,673 - CCNA_02763 0.59 -0.2 2,925,673 - CCNA_02763 0.59 -0.4 2,925,673 - CCNA_02763 0.59 -1.6 2,925,673 - CCNA_02763 0.59 -0.4 2,925,673 - CCNA_02763 0.59 -1.1 2,925,673 - CCNA_02763 0.59 -0.7 2,925,673 - CCNA_02763 0.59 -1.2 2,925,673 - CCNA_02763 0.59 +0.6 2,925,673 - CCNA_02763 0.59 -1.7 2,925,673 - CCNA_02763 0.59 -0.3 2,925,673 - CCNA_02763 0.59 -0.1 2,925,673 - CCNA_02763 0.59 -0.7 2,925,673 - CCNA_02763 0.59 -1.3 2,925,673 - CCNA_02763 0.59 +1.4 2,925,673 - CCNA_02763 0.59 +0.5 2,925,673 - CCNA_02763 0.59 -0.5 2,925,673 - CCNA_02763 0.59 +0.9 2,925,745 - CCNA_02763 0.65 +0.7 2,925,750 + CCNA_02763 0.65 -0.2 2,925,750 + CCNA_02763 0.65 -0.6 2,925,760 + CCNA_02763 0.66 +0.5 2,925,768 - CCNA_02763 0.67 -2.0 2,925,769 - CCNA_02763 0.67 -0.1 2,925,801 + CCNA_02763 0.69 +1.2 2,925,802 - CCNA_02763 0.69 -1.0 2,925,818 - CCNA_02763 0.71 -0.7 2,925,887 - CCNA_02763 0.76 +0.1 2,925,889 + CCNA_02763 0.76 -0.1 2,925,905 - CCNA_02763 0.78 +0.3 2,925,977 - CCNA_02763 0.83 -0.4 2,925,977 - CCNA_02763 0.83 -1.8 2,925,977 - CCNA_02763 0.83 -1.4 2,925,977 - CCNA_02763 0.83 -2.3 2,925,977 - CCNA_02763 0.83 -0.1 2,925,977 - CCNA_02763 0.83 -1.1 2,926,009 + CCNA_02763 0.86 +2.0 2,926,053 - CCNA_02763 0.89 -0.8 2,926,063 - -1.0 2,926,071 - -2.6 2,926,126 + -1.1 2,926,134 + -2.2 2,926,134 + -1.1 2,926,142 - -1.8 2,926,173 - -0.5 2,926,184 + -1.1 2,926,184 + -0.4 2,926,187 - -0.9 2,926,189 + +0.1 2,926,192 - -0.6 2,926,197 - +0.6 2,926,197 - -1.2 2,926,207 - +1.6 2,926,213 + +0.9 2,926,221 - +0.1 2,926,221 - -0.8 2,926,221 - +1.0 2,926,221 - -1.0 2,926,221 - +1.2 2,926,221 - -0.9 2,926,226 - -0.1 2,926,248 - CCNA_02764 0.14 -1.3 2,926,257 - CCNA_02764 0.17 +1.0 2,926,257 - CCNA_02764 0.17 +1.1 2,926,291 - CCNA_02764 0.32 -0.6 2,926,291 - CCNA_02764 0.32 -0.7 2,926,318 + CCNA_02764 0.43 -1.8 2,926,323 + CCNA_02764 0.45 -0.8 2,926,351 + +3.6 2,926,361 + CCNA_02764 0.61 +0.0 2,926,379 + CCNA_02764 0.68 -1.0 2,926,379 + CCNA_02764 0.68 -1.0 2,926,379 + CCNA_02764 0.68 -1.7 2,926,379 + CCNA_02764 0.68 -0.3 2,926,379 + CCNA_02764 0.68 -0.8 2,926,379 + CCNA_02764 0.68 -0.2 2,926,379 + CCNA_02764 0.68 -0.7 2,926,379 + CCNA_02764 0.68 -0.5 2,926,379 + CCNA_02764 0.68 -1.2 2,926,387 - CCNA_02764 0.72 +1.1 2,926,387 - CCNA_02764 0.72 -0.6 2,926,387 - CCNA_02764 0.72 -0.2 2,926,387 - CCNA_02764 0.72 -2.0 2,926,466 + -0.6 2,926,466 - +0.5 2,926,497 + +1.6 2,926,503 + -0.9 2,926,511 - +0.5 2,926,511 - +2.0 2,926,511 - -1.6 2,926,548 + CCNA_02765 0.11 -1.5 2,926,569 - CCNA_02765 0.16 +0.2 2,926,616 - CCNA_02765 0.29 +0.3 2,926,638 - CCNA_02765 0.34 -0.0 2,926,638 - CCNA_02765 0.34 +0.5 2,926,658 + CCNA_02765 0.40 +2.0 2,926,659 + CCNA_02765 0.40 -0.6 2,926,667 - CCNA_02765 0.42 -0.8 2,926,667 - CCNA_02765 0.42 +0.6 2,926,719 - CCNA_02765 0.55 +0.5 2,926,794 + CCNA_02765 0.75 -0.7 2,926,807 + CCNA_02765 0.78 +0.0 2,926,810 - CCNA_02765 0.79 -0.1 2,926,831 + CCNA_02765 0.85 +0.3 2,926,854 - -0.1 2,926,866 - -0.9 2,926,867 - +4.1 2,926,890 + -0.6 2,926,890 + +0.0 2,926,906 + -0.6 2,926,906 + +0.1 2,926,906 + +0.0 2,926,906 + -0.8 2,926,906 + -2.3 2,926,906 + +0.2 2,926,906 + +1.2 2,926,919 - CCNA_02766 0.12 -0.1 2,926,929 - CCNA_02766 0.15 -0.9 2,926,929 - CCNA_02766 0.15 +0.0 2,926,936 - CCNA_02766 0.18 +2.0 2,926,945 + CCNA_02766 0.21 +0.8 2,926,976 - CCNA_02766 0.32 -0.9 2,926,997 - CCNA_02766 0.40 +0.5 2,927,041 - CCNA_02766 0.56 +0.8 2,927,041 - CCNA_02766 0.56 +1.0 2,927,046 - CCNA_02766 0.57 -0.8 2,927,070 + CCNA_02766 0.66 +0.2 2,927,092 - CCNA_02766 0.74 -1.0 2,927,156 - +0.4 2,927,157 - -1.7 2,927,173 + +0.8 2,927,173 + -1.6 2,927,181 - -0.9 2,927,181 - +0.4 2,927,184 - -0.4 2,927,209 - -0.8 2,927,239 - -1.2 2,927,239 - -0.1 2,927,249 - -0.3 2,927,261 - +0.4 2,927,296 + -0.2 2,927,338 + CCNA_02767 0.13 +0.8 2,927,363 + CCNA_02767 0.15 -2.0 2,927,365 + CCNA_02767 0.15 -0.3 2,927,382 + CCNA_02767 0.16 -1.1 2,927,390 - CCNA_02767 0.17 +1.4 2,927,390 - CCNA_02767 0.17 -0.4 2,927,390 - CCNA_02767 0.17 -0.6 2,927,393 + CCNA_02767 0.17 +2.4 2,927,393 + CCNA_02767 0.17 +1.6 2,927,394 - CCNA_02767 0.17 -1.6 2,927,400 - CCNA_02767 0.18 +0.7 2,927,401 - CCNA_02767 0.18 +1.0 2,927,401 - CCNA_02767 0.18 -0.4 2,927,401 - CCNA_02767 0.18 -0.2 2,927,402 + CCNA_02767 0.18 -0.9 2,927,408 + CCNA_02767 0.18 +0.4 2,927,408 + CCNA_02767 0.18 +1.6 2,927,408 + CCNA_02767 0.18 -2.3 2,927,416 - CCNA_02767 0.19 -1.1 2,927,416 - CCNA_02767 0.19 -1.5 2,927,416 - CCNA_02767 0.19 -2.1 2,927,416 - CCNA_02767 0.19 -0.7 2,927,416 - CCNA_02767 0.19 -2.3 2,927,418 + CCNA_02767 0.19 +1.1 2,927,426 - CCNA_02767 0.20 +0.8 2,927,426 - CCNA_02767 0.20 +0.6 2,927,426 - CCNA_02767 0.20 -0.1 2,927,426 - CCNA_02767 0.20 -0.4
Or see this region's nucleotide sequence