Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02764

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02763 and CCNA_02764 are separated by 31 nucleotidesCCNA_02764 and CCNA_02765 are separated by 51 nucleotidesCCNA_02765 and CCNA_02766 overlap by 4 nucleotidesCCNA_02766 and CCNA_02767 are separated by 11 nucleotides CCNA_02763: CCNA_02763 - bacteriophage P4 integrase, at 2,924,942 to 2,926,183 _02763 CCNA_02764: CCNA_02764 - hypothetical protein, at 2,926,215 to 2,926,454 _02764 CCNA_02765: CCNA_02765 - hypothetical protein, at 2,926,506 to 2,926,889 _02765 CCNA_02766: CCNA_02766 - hypothetical protein, at 2,926,886 to 2,927,164 _02766 CCNA_02767: CCNA_02767 - conjugal transfer protein TrbI, at 2,927,176 to 2,928,432 _02767 Position (kb) 2926 2927Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2925.230 kb on - strand, within CCNA_02763at 2925.247 kb on + strand, within CCNA_02763at 2925.297 kb on - strand, within CCNA_02763at 2925.439 kb on + strand, within CCNA_02763at 2925.439 kb on + strand, within CCNA_02763at 2925.439 kb on + strand, within CCNA_02763at 2925.439 kb on + strand, within CCNA_02763at 2925.447 kb on - strand, within CCNA_02763at 2925.447 kb on - strand, within CCNA_02763at 2925.447 kb on - strand, within CCNA_02763at 2925.459 kb on + strand, within CCNA_02763at 2925.462 kb on - strand, within CCNA_02763at 2925.466 kb on + strandat 2925.469 kb on - strand, within CCNA_02763at 2925.474 kb on - strand, within CCNA_02763at 2925.476 kb on + strand, within CCNA_02763at 2925.476 kb on + strand, within CCNA_02763at 2925.476 kb on + strand, within CCNA_02763at 2925.490 kb on + strand, within CCNA_02763at 2925.531 kb on + strand, within CCNA_02763at 2925.531 kb on + strand, within CCNA_02763at 2925.539 kb on - strand, within CCNA_02763at 2925.622 kb on + strand, within CCNA_02763at 2925.630 kb on - strand, within CCNA_02763at 2925.630 kb on - strand, within CCNA_02763at 2925.633 kb on + strand, within CCNA_02763at 2925.643 kb on - strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.665 kb on + strand, within CCNA_02763at 2925.668 kb on - strand, within CCNA_02763at 2925.670 kb on + strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.673 kb on - strand, within CCNA_02763at 2925.745 kb on - strand, within CCNA_02763at 2925.750 kb on + strand, within CCNA_02763at 2925.750 kb on + strand, within CCNA_02763at 2925.760 kb on + strand, within CCNA_02763at 2925.768 kb on - strand, within CCNA_02763at 2925.769 kb on - strand, within CCNA_02763at 2925.801 kb on + strand, within CCNA_02763at 2925.802 kb on - strand, within CCNA_02763at 2925.818 kb on - strand, within CCNA_02763at 2925.887 kb on - strand, within CCNA_02763at 2925.889 kb on + strand, within CCNA_02763at 2925.905 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2925.977 kb on - strand, within CCNA_02763at 2926.009 kb on + strand, within CCNA_02763at 2926.053 kb on - strand, within CCNA_02763at 2926.063 kb on - strandat 2926.071 kb on - strandat 2926.126 kb on + strandat 2926.134 kb on + strandat 2926.134 kb on + strandat 2926.142 kb on - strandat 2926.173 kb on - strandat 2926.184 kb on + strandat 2926.184 kb on + strandat 2926.187 kb on - strandat 2926.189 kb on + strandat 2926.192 kb on - strandat 2926.197 kb on - strandat 2926.197 kb on - strandat 2926.207 kb on - strandat 2926.213 kb on + strandat 2926.221 kb on - strandat 2926.221 kb on - strandat 2926.221 kb on - strandat 2926.221 kb on - strandat 2926.221 kb on - strandat 2926.221 kb on - strandat 2926.226 kb on - strandat 2926.248 kb on - strand, within CCNA_02764at 2926.257 kb on - strand, within CCNA_02764at 2926.257 kb on - strand, within CCNA_02764at 2926.291 kb on - strand, within CCNA_02764at 2926.291 kb on - strand, within CCNA_02764at 2926.318 kb on + strand, within CCNA_02764at 2926.323 kb on + strand, within CCNA_02764at 2926.351 kb on + strandat 2926.361 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.379 kb on + strand, within CCNA_02764at 2926.387 kb on - strand, within CCNA_02764at 2926.387 kb on - strand, within CCNA_02764at 2926.387 kb on - strand, within CCNA_02764at 2926.387 kb on - strand, within CCNA_02764at 2926.466 kb on + strandat 2926.466 kb on - strandat 2926.497 kb on + strandat 2926.503 kb on + strandat 2926.511 kb on - strandat 2926.511 kb on - strandat 2926.511 kb on - strandat 2926.548 kb on + strand, within CCNA_02765at 2926.569 kb on - strand, within CCNA_02765at 2926.616 kb on - strand, within CCNA_02765at 2926.638 kb on - strand, within CCNA_02765at 2926.638 kb on - strand, within CCNA_02765at 2926.658 kb on + strand, within CCNA_02765at 2926.659 kb on + strand, within CCNA_02765at 2926.667 kb on - strand, within CCNA_02765at 2926.667 kb on - strand, within CCNA_02765at 2926.719 kb on - strand, within CCNA_02765at 2926.794 kb on + strand, within CCNA_02765at 2926.807 kb on + strand, within CCNA_02765at 2926.810 kb on - strand, within CCNA_02765at 2926.831 kb on + strand, within CCNA_02765at 2926.854 kb on - strandat 2926.866 kb on - strandat 2926.867 kb on - strandat 2926.890 kb on + strandat 2926.890 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.906 kb on + strandat 2926.919 kb on - strand, within CCNA_02766at 2926.929 kb on - strand, within CCNA_02766at 2926.929 kb on - strand, within CCNA_02766at 2926.936 kb on - strand, within CCNA_02766at 2926.945 kb on + strand, within CCNA_02766at 2926.976 kb on - strand, within CCNA_02766at 2926.997 kb on - strand, within CCNA_02766at 2927.041 kb on - strand, within CCNA_02766at 2927.041 kb on - strand, within CCNA_02766at 2927.046 kb on - strand, within CCNA_02766at 2927.070 kb on + strand, within CCNA_02766at 2927.092 kb on - strand, within CCNA_02766at 2927.156 kb on - strandat 2927.157 kb on - strandat 2927.173 kb on + strandat 2927.173 kb on + strandat 2927.181 kb on - strandat 2927.181 kb on - strandat 2927.184 kb on - strandat 2927.209 kb on - strandat 2927.239 kb on - strandat 2927.239 kb on - strandat 2927.249 kb on - strandat 2927.261 kb on - strandat 2927.296 kb on + strandat 2927.338 kb on + strand, within CCNA_02767at 2927.363 kb on + strand, within CCNA_02767at 2927.365 kb on + strand, within CCNA_02767at 2927.382 kb on + strand, within CCNA_02767at 2927.390 kb on - strand, within CCNA_02767at 2927.390 kb on - strand, within CCNA_02767at 2927.390 kb on - strand, within CCNA_02767at 2927.393 kb on + strand, within CCNA_02767at 2927.393 kb on + strand, within CCNA_02767at 2927.394 kb on - strand, within CCNA_02767at 2927.400 kb on - strand, within CCNA_02767at 2927.401 kb on - strand, within CCNA_02767at 2927.401 kb on - strand, within CCNA_02767at 2927.401 kb on - strand, within CCNA_02767at 2927.402 kb on + strand, within CCNA_02767at 2927.408 kb on + strand, within CCNA_02767at 2927.408 kb on + strand, within CCNA_02767at 2927.408 kb on + strand, within CCNA_02767at 2927.416 kb on - strand, within CCNA_02767at 2927.416 kb on - strand, within CCNA_02767at 2927.416 kb on - strand, within CCNA_02767at 2927.416 kb on - strand, within CCNA_02767at 2927.416 kb on - strand, within CCNA_02767at 2927.418 kb on + strand, within CCNA_02767at 2927.426 kb on - strand, within CCNA_02767at 2927.426 kb on - strand, within CCNA_02767at 2927.426 kb on - strand, within CCNA_02767at 2927.426 kb on - strand, within CCNA_02767

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,925,230 - CCNA_02763 0.23 -1.0
2,925,247 + CCNA_02763 0.25 +0.6
2,925,297 - CCNA_02763 0.29 +0.0
2,925,439 + CCNA_02763 0.40 +0.8
2,925,439 + CCNA_02763 0.40 -0.6
2,925,439 + CCNA_02763 0.40 -0.3
2,925,439 + CCNA_02763 0.40 +1.9
2,925,447 - CCNA_02763 0.41 -2.2
2,925,447 - CCNA_02763 0.41 +1.2
2,925,447 - CCNA_02763 0.41 -0.9
2,925,459 + CCNA_02763 0.42 -0.2
2,925,462 - CCNA_02763 0.42 +0.4
2,925,466 + +2.6
2,925,469 - CCNA_02763 0.42 +1.0
2,925,474 - CCNA_02763 0.43 +0.3
2,925,476 + CCNA_02763 0.43 -1.3
2,925,476 + CCNA_02763 0.43 -0.4
2,925,476 + CCNA_02763 0.43 +0.6
2,925,490 + CCNA_02763 0.44 -0.9
2,925,531 + CCNA_02763 0.47 -0.9
2,925,531 + CCNA_02763 0.47 +0.6
2,925,539 - CCNA_02763 0.48 -0.9
2,925,622 + CCNA_02763 0.55 +0.4
2,925,630 - CCNA_02763 0.55 -0.1
2,925,630 - CCNA_02763 0.55 -2.2
2,925,633 + CCNA_02763 0.56 -1.0
2,925,643 - CCNA_02763 0.56 -0.2
2,925,665 + CCNA_02763 0.58 +2.0
2,925,665 + CCNA_02763 0.58 -0.4
2,925,665 + CCNA_02763 0.58 +1.6
2,925,665 + CCNA_02763 0.58 +0.1
2,925,665 + CCNA_02763 0.58 +2.0
2,925,665 + CCNA_02763 0.58 -0.7
2,925,665 + CCNA_02763 0.58 -0.9
2,925,668 - CCNA_02763 0.58 -0.8
2,925,670 + CCNA_02763 0.59 -2.5
2,925,673 - CCNA_02763 0.59 -0.2
2,925,673 - CCNA_02763 0.59 -0.4
2,925,673 - CCNA_02763 0.59 -1.6
2,925,673 - CCNA_02763 0.59 -0.4
2,925,673 - CCNA_02763 0.59 -1.1
2,925,673 - CCNA_02763 0.59 -0.7
2,925,673 - CCNA_02763 0.59 -1.2
2,925,673 - CCNA_02763 0.59 +0.6
2,925,673 - CCNA_02763 0.59 -1.7
2,925,673 - CCNA_02763 0.59 -0.3
2,925,673 - CCNA_02763 0.59 -0.1
2,925,673 - CCNA_02763 0.59 -0.7
2,925,673 - CCNA_02763 0.59 -1.3
2,925,673 - CCNA_02763 0.59 +1.4
2,925,673 - CCNA_02763 0.59 +0.5
2,925,673 - CCNA_02763 0.59 -0.5
2,925,673 - CCNA_02763 0.59 +0.9
2,925,745 - CCNA_02763 0.65 +0.7
2,925,750 + CCNA_02763 0.65 -0.2
2,925,750 + CCNA_02763 0.65 -0.6
2,925,760 + CCNA_02763 0.66 +0.5
2,925,768 - CCNA_02763 0.67 -2.0
2,925,769 - CCNA_02763 0.67 -0.1
2,925,801 + CCNA_02763 0.69 +1.2
2,925,802 - CCNA_02763 0.69 -1.0
2,925,818 - CCNA_02763 0.71 -0.7
2,925,887 - CCNA_02763 0.76 +0.1
2,925,889 + CCNA_02763 0.76 -0.1
2,925,905 - CCNA_02763 0.78 +0.3
2,925,977 - CCNA_02763 0.83 -0.4
2,925,977 - CCNA_02763 0.83 -1.8
2,925,977 - CCNA_02763 0.83 -1.4
2,925,977 - CCNA_02763 0.83 -2.3
2,925,977 - CCNA_02763 0.83 -0.1
2,925,977 - CCNA_02763 0.83 -1.1
2,926,009 + CCNA_02763 0.86 +2.0
2,926,053 - CCNA_02763 0.89 -0.8
2,926,063 - -1.0
2,926,071 - -2.6
2,926,126 + -1.1
2,926,134 + -2.2
2,926,134 + -1.1
2,926,142 - -1.8
2,926,173 - -0.5
2,926,184 + -1.1
2,926,184 + -0.4
2,926,187 - -0.9
2,926,189 + +0.1
2,926,192 - -0.6
2,926,197 - +0.6
2,926,197 - -1.2
2,926,207 - +1.6
2,926,213 + +0.9
2,926,221 - +0.1
2,926,221 - -0.8
2,926,221 - +1.0
2,926,221 - -1.0
2,926,221 - +1.2
2,926,221 - -0.9
2,926,226 - -0.1
2,926,248 - CCNA_02764 0.14 -1.3
2,926,257 - CCNA_02764 0.17 +1.0
2,926,257 - CCNA_02764 0.17 +1.1
2,926,291 - CCNA_02764 0.32 -0.6
2,926,291 - CCNA_02764 0.32 -0.7
2,926,318 + CCNA_02764 0.43 -1.8
2,926,323 + CCNA_02764 0.45 -0.8
2,926,351 + +3.6
2,926,361 + CCNA_02764 0.61 +0.0
2,926,379 + CCNA_02764 0.68 -1.0
2,926,379 + CCNA_02764 0.68 -1.0
2,926,379 + CCNA_02764 0.68 -1.7
2,926,379 + CCNA_02764 0.68 -0.3
2,926,379 + CCNA_02764 0.68 -0.8
2,926,379 + CCNA_02764 0.68 -0.2
2,926,379 + CCNA_02764 0.68 -0.7
2,926,379 + CCNA_02764 0.68 -0.5
2,926,379 + CCNA_02764 0.68 -1.2
2,926,387 - CCNA_02764 0.72 +1.1
2,926,387 - CCNA_02764 0.72 -0.6
2,926,387 - CCNA_02764 0.72 -0.2
2,926,387 - CCNA_02764 0.72 -2.0
2,926,466 + -0.6
2,926,466 - +0.5
2,926,497 + +1.6
2,926,503 + -0.9
2,926,511 - +0.5
2,926,511 - +2.0
2,926,511 - -1.6
2,926,548 + CCNA_02765 0.11 -1.5
2,926,569 - CCNA_02765 0.16 +0.2
2,926,616 - CCNA_02765 0.29 +0.3
2,926,638 - CCNA_02765 0.34 -0.0
2,926,638 - CCNA_02765 0.34 +0.5
2,926,658 + CCNA_02765 0.40 +2.0
2,926,659 + CCNA_02765 0.40 -0.6
2,926,667 - CCNA_02765 0.42 -0.8
2,926,667 - CCNA_02765 0.42 +0.6
2,926,719 - CCNA_02765 0.55 +0.5
2,926,794 + CCNA_02765 0.75 -0.7
2,926,807 + CCNA_02765 0.78 +0.0
2,926,810 - CCNA_02765 0.79 -0.1
2,926,831 + CCNA_02765 0.85 +0.3
2,926,854 - -0.1
2,926,866 - -0.9
2,926,867 - +4.1
2,926,890 + -0.6
2,926,890 + +0.0
2,926,906 + -0.6
2,926,906 + +0.1
2,926,906 + +0.0
2,926,906 + -0.8
2,926,906 + -2.3
2,926,906 + +0.2
2,926,906 + +1.2
2,926,919 - CCNA_02766 0.12 -0.1
2,926,929 - CCNA_02766 0.15 -0.9
2,926,929 - CCNA_02766 0.15 +0.0
2,926,936 - CCNA_02766 0.18 +2.0
2,926,945 + CCNA_02766 0.21 +0.8
2,926,976 - CCNA_02766 0.32 -0.9
2,926,997 - CCNA_02766 0.40 +0.5
2,927,041 - CCNA_02766 0.56 +0.8
2,927,041 - CCNA_02766 0.56 +1.0
2,927,046 - CCNA_02766 0.57 -0.8
2,927,070 + CCNA_02766 0.66 +0.2
2,927,092 - CCNA_02766 0.74 -1.0
2,927,156 - +0.4
2,927,157 - -1.7
2,927,173 + +0.8
2,927,173 + -1.6
2,927,181 - -0.9
2,927,181 - +0.4
2,927,184 - -0.4
2,927,209 - -0.8
2,927,239 - -1.2
2,927,239 - -0.1
2,927,249 - -0.3
2,927,261 - +0.4
2,927,296 + -0.2
2,927,338 + CCNA_02767 0.13 +0.8
2,927,363 + CCNA_02767 0.15 -2.0
2,927,365 + CCNA_02767 0.15 -0.3
2,927,382 + CCNA_02767 0.16 -1.1
2,927,390 - CCNA_02767 0.17 +1.4
2,927,390 - CCNA_02767 0.17 -0.4
2,927,390 - CCNA_02767 0.17 -0.6
2,927,393 + CCNA_02767 0.17 +2.4
2,927,393 + CCNA_02767 0.17 +1.6
2,927,394 - CCNA_02767 0.17 -1.6
2,927,400 - CCNA_02767 0.18 +0.7
2,927,401 - CCNA_02767 0.18 +1.0
2,927,401 - CCNA_02767 0.18 -0.4
2,927,401 - CCNA_02767 0.18 -0.2
2,927,402 + CCNA_02767 0.18 -0.9
2,927,408 + CCNA_02767 0.18 +0.4
2,927,408 + CCNA_02767 0.18 +1.6
2,927,408 + CCNA_02767 0.18 -2.3
2,927,416 - CCNA_02767 0.19 -1.1
2,927,416 - CCNA_02767 0.19 -1.5
2,927,416 - CCNA_02767 0.19 -2.1
2,927,416 - CCNA_02767 0.19 -0.7
2,927,416 - CCNA_02767 0.19 -2.3
2,927,418 + CCNA_02767 0.19 +1.1
2,927,426 - CCNA_02767 0.20 +0.8
2,927,426 - CCNA_02767 0.20 +0.6
2,927,426 - CCNA_02767 0.20 -0.1
2,927,426 - CCNA_02767 0.20 -0.4

Or see this region's nucleotide sequence