Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02673 and CCNA_02674 are separated by 199 nucleotides CCNA_02674 and CCNA_02675 overlap by 136 nucleotides CCNA_02675 and CCNA_02676 are separated by 18 nucleotides CCNA_02676 and CCNA_02677 are separated by 168 nucleotides CCNA_02677 and CCNA_02678 are separated by 5 nucleotides
CCNA_02673: CCNA_02673 - excinuclease ABC subunit A, at 2,825,362 to 2,828,268
_02673
CCNA_02674: CCNA_02674 - transposase, at 2,828,468 to 2,828,881
_02674
CCNA_02675: CCNA_02675 - transposase, at 2,828,746 to 2,829,240
_02675
CCNA_02676: CCNA_02676 - hypothetical protein, at 2,829,259 to 2,830,155
_02676
CCNA_02677: CCNA_02677 - glutathione S-transferase, at 2,830,324 to 2,830,938
_02677
CCNA_02678: CCNA_02678 - conserved transmembrane protein, at 2,830,944 to 2,831,828
_02678
Position (kb)
2829
2830
2831 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2828.262 kb on + strand at 2828.262 kb on + strand at 2828.270 kb on - strand at 2828.270 kb on - strand at 2828.289 kb on - strand at 2828.299 kb on - strand at 2828.299 kb on - strand at 2828.299 kb on - strand at 2829.326 kb on - strand at 2829.404 kb on - strand, within CCNA_02676 at 2829.440 kb on - strand, within CCNA_02676 at 2829.520 kb on - strand, within CCNA_02676 at 2829.528 kb on - strand, within CCNA_02676 at 2829.542 kb on + strand, within CCNA_02676 at 2829.545 kb on - strand, within CCNA_02676 at 2829.610 kb on + strand, within CCNA_02676 at 2829.617 kb on - strand, within CCNA_02676 at 2829.669 kb on - strand, within CCNA_02676 at 2829.674 kb on - strand, within CCNA_02676 at 2829.674 kb on - strand, within CCNA_02676 at 2829.733 kb on - strand, within CCNA_02676 at 2829.733 kb on - strand, within CCNA_02676 at 2829.805 kb on + strand, within CCNA_02676 at 2829.808 kb on - strand, within CCNA_02676 at 2829.855 kb on - strand, within CCNA_02676 at 2829.870 kb on - strand, within CCNA_02676 at 2829.911 kb on + strand, within CCNA_02676 at 2829.919 kb on - strand, within CCNA_02676 at 2829.919 kb on - strand, within CCNA_02676 at 2829.931 kb on + strand, within CCNA_02676 at 2829.993 kb on - strand, within CCNA_02676 at 2830.224 kb on - strand at 2830.231 kb on - strand at 2830.274 kb on + strand at 2830.285 kb on + strand at 2830.307 kb on + strand at 2830.310 kb on - strand at 2830.316 kb on - strand at 2830.326 kb on - strand at 2830.360 kb on - strand at 2830.369 kb on + strand at 2830.377 kb on - strand at 2830.392 kb on + strand, within CCNA_02677 at 2830.393 kb on + strand, within CCNA_02677 at 2830.468 kb on + strand, within CCNA_02677 at 2830.469 kb on + strand, within CCNA_02677 at 2830.469 kb on + strand, within CCNA_02677 at 2830.594 kb on - strand, within CCNA_02677 at 2830.596 kb on + strand, within CCNA_02677 at 2830.596 kb on + strand, within CCNA_02677 at 2830.604 kb on - strand, within CCNA_02677 at 2830.752 kb on - strand, within CCNA_02677 at 2830.770 kb on + strand, within CCNA_02677 at 2830.778 kb on - strand, within CCNA_02677 at 2830.802 kb on + strand, within CCNA_02677 at 2830.859 kb on - strand, within CCNA_02677 at 2830.886 kb on - strand at 2830.887 kb on + strand at 2830.889 kb on + strand at 2830.893 kb on + strand at 2830.895 kb on - strand at 2830.895 kb on - strand at 2830.950 kb on - strand at 2830.958 kb on - strand at 2830.958 kb on - strand at 2830.973 kb on - strand at 2830.974 kb on - strand at 2830.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,828,262 + -0.1 2,828,262 + +0.7 2,828,270 - -2.0 2,828,270 - -1.8 2,828,289 - -0.9 2,828,299 - -0.8 2,828,299 - +0.4 2,828,299 - +0.2 2,829,326 - +0.6 2,829,404 - CCNA_02676 0.16 +0.7 2,829,440 - CCNA_02676 0.20 -1.1 2,829,520 - CCNA_02676 0.29 -1.1 2,829,528 - CCNA_02676 0.30 +0.3 2,829,542 + CCNA_02676 0.32 +0.1 2,829,545 - CCNA_02676 0.32 -1.2 2,829,610 + CCNA_02676 0.39 -0.9 2,829,617 - CCNA_02676 0.40 -3.3 2,829,669 - CCNA_02676 0.46 +0.4 2,829,674 - CCNA_02676 0.46 -1.4 2,829,674 - CCNA_02676 0.46 -0.5 2,829,733 - CCNA_02676 0.53 -0.4 2,829,733 - CCNA_02676 0.53 -1.3 2,829,805 + CCNA_02676 0.61 -1.0 2,829,808 - CCNA_02676 0.61 +0.1 2,829,855 - CCNA_02676 0.66 -1.9 2,829,870 - CCNA_02676 0.68 +0.1 2,829,911 + CCNA_02676 0.73 +0.2 2,829,919 - CCNA_02676 0.74 +0.0 2,829,919 - CCNA_02676 0.74 +1.2 2,829,931 + CCNA_02676 0.75 +0.4 2,829,993 - CCNA_02676 0.82 -2.9 2,830,224 - -0.4 2,830,231 - +0.4 2,830,274 + -2.0 2,830,285 + -0.4 2,830,307 + -0.1 2,830,310 - -1.6 2,830,316 - -1.0 2,830,326 - +1.5 2,830,360 - +1.7 2,830,369 + -0.6 2,830,377 - -0.6 2,830,392 + CCNA_02677 0.11 -0.2 2,830,393 + CCNA_02677 0.11 +1.2 2,830,468 + CCNA_02677 0.23 +1.2 2,830,469 + CCNA_02677 0.24 +0.5 2,830,469 + CCNA_02677 0.24 -0.2 2,830,594 - CCNA_02677 0.44 +1.1 2,830,596 + CCNA_02677 0.44 -1.1 2,830,596 + CCNA_02677 0.44 +0.5 2,830,604 - CCNA_02677 0.46 +0.4 2,830,752 - CCNA_02677 0.70 -0.3 2,830,770 + CCNA_02677 0.73 -1.5 2,830,778 - CCNA_02677 0.74 -0.7 2,830,802 + CCNA_02677 0.78 +0.2 2,830,859 - CCNA_02677 0.87 -1.6 2,830,886 - -0.5 2,830,887 + +0.6 2,830,889 + +0.2 2,830,893 + -0.5 2,830,895 - -2.4 2,830,895 - +0.7 2,830,950 - -1.5 2,830,958 - +0.2 2,830,958 - +1.8 2,830,973 - -0.6 2,830,974 - +1.0 2,830,984 - -1.8
Or see this region's nucleotide sequence