Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02676

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02673 and CCNA_02674 are separated by 199 nucleotidesCCNA_02674 and CCNA_02675 overlap by 136 nucleotidesCCNA_02675 and CCNA_02676 are separated by 18 nucleotidesCCNA_02676 and CCNA_02677 are separated by 168 nucleotidesCCNA_02677 and CCNA_02678 are separated by 5 nucleotides CCNA_02673: CCNA_02673 - excinuclease ABC subunit A, at 2,825,362 to 2,828,268 _02673 CCNA_02674: CCNA_02674 - transposase, at 2,828,468 to 2,828,881 _02674 CCNA_02675: CCNA_02675 - transposase, at 2,828,746 to 2,829,240 _02675 CCNA_02676: CCNA_02676 - hypothetical protein, at 2,829,259 to 2,830,155 _02676 CCNA_02677: CCNA_02677 - glutathione S-transferase, at 2,830,324 to 2,830,938 _02677 CCNA_02678: CCNA_02678 - conserved transmembrane protein, at 2,830,944 to 2,831,828 _02678 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2828.262 kb on + strandat 2828.262 kb on + strandat 2828.270 kb on - strandat 2828.270 kb on - strandat 2828.289 kb on - strandat 2828.299 kb on - strandat 2828.299 kb on - strandat 2828.299 kb on - strandat 2829.326 kb on - strandat 2829.404 kb on - strand, within CCNA_02676at 2829.440 kb on - strand, within CCNA_02676at 2829.520 kb on - strand, within CCNA_02676at 2829.528 kb on - strand, within CCNA_02676at 2829.542 kb on + strand, within CCNA_02676at 2829.545 kb on - strand, within CCNA_02676at 2829.610 kb on + strand, within CCNA_02676at 2829.617 kb on - strand, within CCNA_02676at 2829.669 kb on - strand, within CCNA_02676at 2829.674 kb on - strand, within CCNA_02676at 2829.674 kb on - strand, within CCNA_02676at 2829.733 kb on - strand, within CCNA_02676at 2829.733 kb on - strand, within CCNA_02676at 2829.805 kb on + strand, within CCNA_02676at 2829.808 kb on - strand, within CCNA_02676at 2829.855 kb on - strand, within CCNA_02676at 2829.870 kb on - strand, within CCNA_02676at 2829.911 kb on + strand, within CCNA_02676at 2829.919 kb on - strand, within CCNA_02676at 2829.919 kb on - strand, within CCNA_02676at 2829.931 kb on + strand, within CCNA_02676at 2829.993 kb on - strand, within CCNA_02676at 2830.224 kb on - strandat 2830.231 kb on - strandat 2830.274 kb on + strandat 2830.285 kb on + strandat 2830.307 kb on + strandat 2830.310 kb on - strandat 2830.316 kb on - strandat 2830.326 kb on - strandat 2830.360 kb on - strandat 2830.369 kb on + strandat 2830.377 kb on - strandat 2830.392 kb on + strand, within CCNA_02677at 2830.393 kb on + strand, within CCNA_02677at 2830.468 kb on + strand, within CCNA_02677at 2830.469 kb on + strand, within CCNA_02677at 2830.469 kb on + strand, within CCNA_02677at 2830.594 kb on - strand, within CCNA_02677at 2830.596 kb on + strand, within CCNA_02677at 2830.596 kb on + strand, within CCNA_02677at 2830.604 kb on - strand, within CCNA_02677at 2830.752 kb on - strand, within CCNA_02677at 2830.770 kb on + strand, within CCNA_02677at 2830.778 kb on - strand, within CCNA_02677at 2830.802 kb on + strand, within CCNA_02677at 2830.859 kb on - strand, within CCNA_02677at 2830.886 kb on - strandat 2830.887 kb on + strandat 2830.889 kb on + strandat 2830.893 kb on + strandat 2830.895 kb on - strandat 2830.895 kb on - strandat 2830.950 kb on - strandat 2830.958 kb on - strandat 2830.958 kb on - strandat 2830.973 kb on - strandat 2830.974 kb on - strandat 2830.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,828,262 + -0.1
2,828,262 + +0.7
2,828,270 - -2.0
2,828,270 - -1.8
2,828,289 - -0.9
2,828,299 - -0.8
2,828,299 - +0.4
2,828,299 - +0.2
2,829,326 - +0.6
2,829,404 - CCNA_02676 0.16 +0.7
2,829,440 - CCNA_02676 0.20 -1.1
2,829,520 - CCNA_02676 0.29 -1.1
2,829,528 - CCNA_02676 0.30 +0.3
2,829,542 + CCNA_02676 0.32 +0.1
2,829,545 - CCNA_02676 0.32 -1.2
2,829,610 + CCNA_02676 0.39 -0.9
2,829,617 - CCNA_02676 0.40 -3.3
2,829,669 - CCNA_02676 0.46 +0.4
2,829,674 - CCNA_02676 0.46 -1.4
2,829,674 - CCNA_02676 0.46 -0.5
2,829,733 - CCNA_02676 0.53 -0.4
2,829,733 - CCNA_02676 0.53 -1.3
2,829,805 + CCNA_02676 0.61 -1.0
2,829,808 - CCNA_02676 0.61 +0.1
2,829,855 - CCNA_02676 0.66 -1.9
2,829,870 - CCNA_02676 0.68 +0.1
2,829,911 + CCNA_02676 0.73 +0.2
2,829,919 - CCNA_02676 0.74 +0.0
2,829,919 - CCNA_02676 0.74 +1.2
2,829,931 + CCNA_02676 0.75 +0.4
2,829,993 - CCNA_02676 0.82 -2.9
2,830,224 - -0.4
2,830,231 - +0.4
2,830,274 + -2.0
2,830,285 + -0.4
2,830,307 + -0.1
2,830,310 - -1.6
2,830,316 - -1.0
2,830,326 - +1.5
2,830,360 - +1.7
2,830,369 + -0.6
2,830,377 - -0.6
2,830,392 + CCNA_02677 0.11 -0.2
2,830,393 + CCNA_02677 0.11 +1.2
2,830,468 + CCNA_02677 0.23 +1.2
2,830,469 + CCNA_02677 0.24 +0.5
2,830,469 + CCNA_02677 0.24 -0.2
2,830,594 - CCNA_02677 0.44 +1.1
2,830,596 + CCNA_02677 0.44 -1.1
2,830,596 + CCNA_02677 0.44 +0.5
2,830,604 - CCNA_02677 0.46 +0.4
2,830,752 - CCNA_02677 0.70 -0.3
2,830,770 + CCNA_02677 0.73 -1.5
2,830,778 - CCNA_02677 0.74 -0.7
2,830,802 + CCNA_02677 0.78 +0.2
2,830,859 - CCNA_02677 0.87 -1.6
2,830,886 - -0.5
2,830,887 + +0.6
2,830,889 + +0.2
2,830,893 + -0.5
2,830,895 - -2.4
2,830,895 - +0.7
2,830,950 - -1.5
2,830,958 - +0.2
2,830,958 - +1.8
2,830,973 - -0.6
2,830,974 - +1.0
2,830,984 - -1.8

Or see this region's nucleotide sequence