Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02632

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02630 and CCNA_02631 are separated by 69 nucleotidesCCNA_02631 and CCNA_02632 are separated by 349 nucleotidesCCNA_02632 and CCNA_02633 are separated by 51 nucleotides CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527 _02630 CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770 _02631 CCNA_02632: CCNA_02632 - SOUL domain heme-binding protein, at 2,782,120 to 2,782,746 _02632 CCNA_02633: CCNA_02633 - membrane-bound glycosyl hydrolase, at 2,782,798 to 2,785,158 _02633 Position (kb) 2782 2783Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2781.126 kb on - strand, within CCNA_02630at 2781.126 kb on - strand, within CCNA_02630at 2781.183 kb on - strand, within CCNA_02630at 2781.183 kb on - strand, within CCNA_02630at 2781.196 kb on + strand, within CCNA_02630at 2781.204 kb on - strand, within CCNA_02630at 2781.252 kb on - strand, within CCNA_02630at 2781.254 kb on + strand, within CCNA_02630at 2781.287 kb on - strand, within CCNA_02630at 2781.315 kb on + strand, within CCNA_02630at 2781.433 kb on + strand, within CCNA_02630at 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.529 kb on - strandat 2781.613 kb on + strandat 2781.623 kb on + strand, within CCNA_02631at 2781.640 kb on - strand, within CCNA_02631at 2781.724 kb on + strand, within CCNA_02631at 2781.732 kb on - strand, within CCNA_02631at 2781.733 kb on + strand, within CCNA_02631at 2781.751 kb on + strand, within CCNA_02631at 2781.841 kb on - strandat 2781.854 kb on - strandat 2781.865 kb on - strandat 2781.884 kb on - strandat 2781.922 kb on + strandat 2781.930 kb on + strandat 2781.961 kb on + strandat 2781.979 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2781.996 kb on + strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.004 kb on - strandat 2782.037 kb on + strandat 2782.040 kb on - strandat 2782.060 kb on + strandat 2782.060 kb on + strandat 2782.068 kb on - strandat 2782.070 kb on + strandat 2782.078 kb on - strandat 2782.078 kb on - strandat 2782.080 kb on + strandat 2782.083 kb on - strandat 2782.083 kb on - strandat 2782.088 kb on - strandat 2782.111 kb on + strandat 2782.125 kb on - strandat 2782.130 kb on - strandat 2782.137 kb on - strandat 2782.152 kb on - strandat 2782.181 kb on + strandat 2782.209 kb on - strand, within CCNA_02632at 2782.216 kb on + strand, within CCNA_02632at 2782.216 kb on - strand, within CCNA_02632at 2782.224 kb on + strand, within CCNA_02632at 2782.235 kb on + strand, within CCNA_02632at 2782.235 kb on + strand, within CCNA_02632at 2782.235 kb on + strand, within CCNA_02632at 2782.243 kb on - strand, within CCNA_02632at 2782.243 kb on - strand, within CCNA_02632at 2782.243 kb on - strand, within CCNA_02632at 2782.253 kb on + strand, within CCNA_02632at 2782.276 kb on - strand, within CCNA_02632at 2782.360 kb on + strand, within CCNA_02632at 2782.368 kb on - strand, within CCNA_02632at 2782.368 kb on - strand, within CCNA_02632at 2782.371 kb on + strand, within CCNA_02632at 2782.405 kb on + strand, within CCNA_02632at 2782.410 kb on + strand, within CCNA_02632at 2782.413 kb on - strand, within CCNA_02632at 2782.413 kb on - strand, within CCNA_02632at 2782.442 kb on - strand, within CCNA_02632at 2782.448 kb on + strand, within CCNA_02632at 2782.461 kb on - strand, within CCNA_02632at 2782.470 kb on + strand, within CCNA_02632at 2782.470 kb on - strand, within CCNA_02632at 2782.470 kb on - strand, within CCNA_02632at 2782.493 kb on + strand, within CCNA_02632at 2782.505 kb on + strand, within CCNA_02632at 2782.510 kb on - strand, within CCNA_02632at 2782.564 kb on + strand, within CCNA_02632at 2782.574 kb on + strand, within CCNA_02632at 2782.574 kb on + strand, within CCNA_02632at 2782.574 kb on + strand, within CCNA_02632at 2782.579 kb on + strand, within CCNA_02632at 2782.582 kb on - strand, within CCNA_02632at 2782.582 kb on - strand, within CCNA_02632at 2782.587 kb on - strand, within CCNA_02632at 2782.608 kb on - strand, within CCNA_02632at 2782.608 kb on - strand, within CCNA_02632at 2782.621 kb on - strand, within CCNA_02632at 2782.634 kb on + strand, within CCNA_02632at 2782.680 kb on + strand, within CCNA_02632at 2782.680 kb on + strand, within CCNA_02632at 2782.688 kb on - strandat 2782.688 kb on - strandat 2782.688 kb on - strandat 2782.688 kb on - strandat 2782.689 kb on + strandat 2782.690 kb on + strandat 2782.731 kb on - strandat 2782.749 kb on + strandat 2782.757 kb on - strandat 2782.757 kb on - strandat 2782.786 kb on + strandat 2782.802 kb on - strandat 2782.807 kb on - strandat 2782.847 kb on + strandat 2782.849 kb on - strandat 2782.872 kb on - strandat 2782.901 kb on - strandat 2782.931 kb on + strandat 2782.931 kb on + strandat 2782.931 kb on + strandat 2782.939 kb on - strandat 2782.995 kb on - strandat 2782.997 kb on + strandat 2783.007 kb on + strandat 2783.014 kb on + strandat 2783.042 kb on + strand, within CCNA_02633at 2783.110 kb on + strand, within CCNA_02633at 2783.135 kb on + strand, within CCNA_02633at 2783.139 kb on - strand, within CCNA_02633at 2783.166 kb on + strand, within CCNA_02633at 2783.202 kb on + strand, within CCNA_02633at 2783.210 kb on - strand, within CCNA_02633at 2783.248 kb on + strand, within CCNA_02633at 2783.248 kb on + strand, within CCNA_02633at 2783.248 kb on + strand, within CCNA_02633at 2783.256 kb on - strand, within CCNA_02633at 2783.256 kb on - strand, within CCNA_02633at 2783.270 kb on + strand, within CCNA_02633at 2783.281 kb on + strand, within CCNA_02633at 2783.289 kb on - strand, within CCNA_02633at 2783.289 kb on - strand, within CCNA_02633at 2783.289 kb on - strandat 2783.289 kb on - strand, within CCNA_02633at 2783.289 kb on - strand, within CCNA_02633at 2783.291 kb on + strand, within CCNA_02633at 2783.300 kb on + strand, within CCNA_02633at 2783.320 kb on + strand, within CCNA_02633at 2783.320 kb on + strand, within CCNA_02633at 2783.323 kb on - strand, within CCNA_02633at 2783.323 kb on - strand, within CCNA_02633at 2783.323 kb on - strand, within CCNA_02633at 2783.323 kb on - strand, within CCNA_02633at 2783.323 kb on - strand, within CCNA_02633at 2783.373 kb on + strand, within CCNA_02633at 2783.411 kb on + strand, within CCNA_02633at 2783.432 kb on + strand, within CCNA_02633at 2783.456 kb on + strand, within CCNA_02633at 2783.535 kb on + strand, within CCNA_02633at 2783.543 kb on - strand, within CCNA_02633at 2783.621 kb on + strand, within CCNA_02633at 2783.629 kb on - strand, within CCNA_02633at 2783.646 kb on - strand, within CCNA_02633at 2783.648 kb on + strand, within CCNA_02633at 2783.662 kb on + strand, within CCNA_02633at 2783.682 kb on + strand, within CCNA_02633at 2783.682 kb on + strand, within CCNA_02633at 2783.703 kb on + strand, within CCNA_02633at 2783.740 kb on + strand, within CCNA_02633

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,781,126 - CCNA_02630 0.23 +0.5
2,781,126 - CCNA_02630 0.23 +0.2
2,781,183 - CCNA_02630 0.34 -1.6
2,781,183 - CCNA_02630 0.34 -1.7
2,781,196 + CCNA_02630 0.36 -0.7
2,781,204 - CCNA_02630 0.38 -0.6
2,781,252 - CCNA_02630 0.47 +0.5
2,781,254 + CCNA_02630 0.48 +0.2
2,781,287 - CCNA_02630 0.54 +0.2
2,781,315 + CCNA_02630 0.59 +0.5
2,781,433 + CCNA_02630 0.82 -1.2
2,781,529 - +0.5
2,781,529 - +0.5
2,781,529 - -0.6
2,781,529 - -0.9
2,781,613 + +1.8
2,781,623 + CCNA_02631 0.15 +0.7
2,781,640 - CCNA_02631 0.25 -1.4
2,781,724 + CCNA_02631 0.73 +0.5
2,781,732 - CCNA_02631 0.78 -2.1
2,781,733 + CCNA_02631 0.78 -0.2
2,781,751 + CCNA_02631 0.89 +0.2
2,781,841 - +0.3
2,781,854 - -0.5
2,781,865 - +0.0
2,781,884 - -2.0
2,781,922 + +0.5
2,781,930 + -0.6
2,781,961 + -0.9
2,781,979 + -2.0
2,781,996 + +0.5
2,781,996 + +0.7
2,781,996 + -0.6
2,781,996 + +1.0
2,781,996 + -1.7
2,781,996 + -0.3
2,782,004 - -0.4
2,782,004 - +0.1
2,782,004 - +0.9
2,782,004 - +0.5
2,782,004 - -0.4
2,782,004 - +0.2
2,782,004 - +1.9
2,782,037 + +0.9
2,782,040 - -2.0
2,782,060 + +0.3
2,782,060 + -0.8
2,782,068 - +0.5
2,782,070 + +0.8
2,782,078 - +1.2
2,782,078 - +0.2
2,782,080 + -1.0
2,782,083 - -0.3
2,782,083 - -2.1
2,782,088 - -0.2
2,782,111 + -0.6
2,782,125 - -0.1
2,782,130 - -0.4
2,782,137 - -2.1
2,782,152 - -1.1
2,782,181 + -0.2
2,782,209 - CCNA_02632 0.14 -1.3
2,782,216 + CCNA_02632 0.15 +1.1
2,782,216 - CCNA_02632 0.15 -2.6
2,782,224 + CCNA_02632 0.17 -0.3
2,782,235 + CCNA_02632 0.18 +1.2
2,782,235 + CCNA_02632 0.18 -0.2
2,782,235 + CCNA_02632 0.18 -0.9
2,782,243 - CCNA_02632 0.20 +1.5
2,782,243 - CCNA_02632 0.20 +0.1
2,782,243 - CCNA_02632 0.20 -1.1
2,782,253 + CCNA_02632 0.21 -1.0
2,782,276 - CCNA_02632 0.25 +1.2
2,782,360 + CCNA_02632 0.38 -1.6
2,782,368 - CCNA_02632 0.40 -1.1
2,782,368 - CCNA_02632 0.40 -0.2
2,782,371 + CCNA_02632 0.40 +1.5
2,782,405 + CCNA_02632 0.45 -2.4
2,782,410 + CCNA_02632 0.46 +0.9
2,782,413 - CCNA_02632 0.47 -0.0
2,782,413 - CCNA_02632 0.47 +0.0
2,782,442 - CCNA_02632 0.51 -1.4
2,782,448 + CCNA_02632 0.52 -1.3
2,782,461 - CCNA_02632 0.54 +1.9
2,782,470 + CCNA_02632 0.56 -1.5
2,782,470 - CCNA_02632 0.56 -1.4
2,782,470 - CCNA_02632 0.56 -1.0
2,782,493 + CCNA_02632 0.59 +0.1
2,782,505 + CCNA_02632 0.61 -0.4
2,782,510 - CCNA_02632 0.62 -2.1
2,782,564 + CCNA_02632 0.71 -0.3
2,782,574 + CCNA_02632 0.72 -1.3
2,782,574 + CCNA_02632 0.72 -0.4
2,782,574 + CCNA_02632 0.72 -0.3
2,782,579 + CCNA_02632 0.73 +1.4
2,782,582 - CCNA_02632 0.74 +1.1
2,782,582 - CCNA_02632 0.74 -1.5
2,782,587 - CCNA_02632 0.74 +0.5
2,782,608 - CCNA_02632 0.78 -1.3
2,782,608 - CCNA_02632 0.78 -1.4
2,782,621 - CCNA_02632 0.80 +1.1
2,782,634 + CCNA_02632 0.82 -0.7
2,782,680 + CCNA_02632 0.89 -1.2
2,782,680 + CCNA_02632 0.89 +0.2
2,782,688 - -0.2
2,782,688 - +1.2
2,782,688 - -0.2
2,782,688 - -1.9
2,782,689 + -1.6
2,782,690 + -1.1
2,782,731 - -0.3
2,782,749 + +0.9
2,782,757 - +0.2
2,782,757 - -1.2
2,782,786 + +0.8
2,782,802 - -0.3
2,782,807 - +1.1
2,782,847 + +0.3
2,782,849 - -0.9
2,782,872 - +0.7
2,782,901 - -0.6
2,782,931 + +0.6
2,782,931 + -1.0
2,782,931 + +4.5
2,782,939 - +0.4
2,782,995 - +1.2
2,782,997 + -0.8
2,783,007 + -0.1
2,783,014 + +1.4
2,783,042 + CCNA_02633 0.10 -1.9
2,783,110 + CCNA_02633 0.13 -0.9
2,783,135 + CCNA_02633 0.14 +0.1
2,783,139 - CCNA_02633 0.14 -0.8
2,783,166 + CCNA_02633 0.16 +1.5
2,783,202 + CCNA_02633 0.17 -0.2
2,783,210 - CCNA_02633 0.17 -1.1
2,783,248 + CCNA_02633 0.19 -0.8
2,783,248 + CCNA_02633 0.19 +0.9
2,783,248 + CCNA_02633 0.19 +1.4
2,783,256 - CCNA_02633 0.19 -0.1
2,783,256 - CCNA_02633 0.19 -1.6
2,783,270 + CCNA_02633 0.20 +0.4
2,783,281 + CCNA_02633 0.20 +0.1
2,783,289 - CCNA_02633 0.21 -0.4
2,783,289 - CCNA_02633 0.21 +0.2
2,783,289 - +1.9
2,783,289 - CCNA_02633 0.21 +1.2
2,783,289 - CCNA_02633 0.21 +1.2
2,783,291 + CCNA_02633 0.21 -0.7
2,783,300 + CCNA_02633 0.21 -1.1
2,783,320 + CCNA_02633 0.22 +0.2
2,783,320 + CCNA_02633 0.22 -0.3
2,783,323 - CCNA_02633 0.22 -1.1
2,783,323 - CCNA_02633 0.22 -0.4
2,783,323 - CCNA_02633 0.22 -0.2
2,783,323 - CCNA_02633 0.22 +1.4
2,783,323 - CCNA_02633 0.22 -1.6
2,783,373 + CCNA_02633 0.24 -1.2
2,783,411 + CCNA_02633 0.26 -2.2
2,783,432 + CCNA_02633 0.27 -1.1
2,783,456 + CCNA_02633 0.28 +0.1
2,783,535 + CCNA_02633 0.31 -0.4
2,783,543 - CCNA_02633 0.32 +2.1
2,783,621 + CCNA_02633 0.35 -0.1
2,783,629 - CCNA_02633 0.35 -0.0
2,783,646 - CCNA_02633 0.36 -0.1
2,783,648 + CCNA_02633 0.36 +0.3
2,783,662 + CCNA_02633 0.37 -1.7
2,783,682 + CCNA_02633 0.37 -0.2
2,783,682 + CCNA_02633 0.37 +1.2
2,783,703 + CCNA_02633 0.38 -1.2
2,783,740 + CCNA_02633 0.40 +0.9

Or see this region's nucleotide sequence