Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02630 and CCNA_02631 are separated by 69 nucleotides CCNA_02631 and CCNA_02632 are separated by 349 nucleotides CCNA_02632 and CCNA_02633 are separated by 51 nucleotides
CCNA_02630: CCNA_02630 - hypothetical protein, at 2,781,006 to 2,781,527
_02630
CCNA_02631: CCNA_02631 - P-loop NTPase-related protein, at 2,781,597 to 2,781,770
_02631
CCNA_02632: CCNA_02632 - SOUL domain heme-binding protein, at 2,782,120 to 2,782,746
_02632
CCNA_02633: CCNA_02633 - membrane-bound glycosyl hydrolase, at 2,782,798 to 2,785,158
_02633
Position (kb)
2782
2783 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2781.126 kb on - strand, within CCNA_02630 at 2781.126 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.183 kb on - strand, within CCNA_02630 at 2781.196 kb on + strand, within CCNA_02630 at 2781.204 kb on - strand, within CCNA_02630 at 2781.252 kb on - strand, within CCNA_02630 at 2781.254 kb on + strand, within CCNA_02630 at 2781.287 kb on - strand, within CCNA_02630 at 2781.315 kb on + strand, within CCNA_02630 at 2781.433 kb on + strand, within CCNA_02630 at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.529 kb on - strand at 2781.613 kb on + strand at 2781.623 kb on + strand, within CCNA_02631 at 2781.640 kb on - strand, within CCNA_02631 at 2781.724 kb on + strand, within CCNA_02631 at 2781.732 kb on - strand, within CCNA_02631 at 2781.733 kb on + strand, within CCNA_02631 at 2781.751 kb on + strand, within CCNA_02631 at 2781.841 kb on - strand at 2781.854 kb on - strand at 2781.865 kb on - strand at 2781.884 kb on - strand at 2781.922 kb on + strand at 2781.930 kb on + strand at 2781.961 kb on + strand at 2781.979 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2781.996 kb on + strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.004 kb on - strand at 2782.037 kb on + strand at 2782.040 kb on - strand at 2782.060 kb on + strand at 2782.060 kb on + strand at 2782.068 kb on - strand at 2782.070 kb on + strand at 2782.078 kb on - strand at 2782.078 kb on - strand at 2782.080 kb on + strand at 2782.083 kb on - strand at 2782.083 kb on - strand at 2782.088 kb on - strand at 2782.111 kb on + strand at 2782.125 kb on - strand at 2782.130 kb on - strand at 2782.137 kb on - strand at 2782.152 kb on - strand at 2782.181 kb on + strand at 2782.209 kb on - strand, within CCNA_02632 at 2782.216 kb on + strand, within CCNA_02632 at 2782.216 kb on - strand, within CCNA_02632 at 2782.224 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.235 kb on + strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.243 kb on - strand, within CCNA_02632 at 2782.253 kb on + strand, within CCNA_02632 at 2782.276 kb on - strand, within CCNA_02632 at 2782.360 kb on + strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.368 kb on - strand, within CCNA_02632 at 2782.371 kb on + strand, within CCNA_02632 at 2782.405 kb on + strand, within CCNA_02632 at 2782.410 kb on + strand, within CCNA_02632 at 2782.413 kb on - strand, within CCNA_02632 at 2782.413 kb on - strand, within CCNA_02632 at 2782.442 kb on - strand, within CCNA_02632 at 2782.448 kb on + strand, within CCNA_02632 at 2782.461 kb on - strand, within CCNA_02632 at 2782.470 kb on + strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.470 kb on - strand, within CCNA_02632 at 2782.493 kb on + strand, within CCNA_02632 at 2782.505 kb on + strand, within CCNA_02632 at 2782.510 kb on - strand, within CCNA_02632 at 2782.564 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.574 kb on + strand, within CCNA_02632 at 2782.579 kb on + strand, within CCNA_02632 at 2782.582 kb on - strand, within CCNA_02632 at 2782.582 kb on - strand, within CCNA_02632 at 2782.587 kb on - strand, within CCNA_02632 at 2782.608 kb on - strand, within CCNA_02632 at 2782.608 kb on - strand, within CCNA_02632 at 2782.621 kb on - strand, within CCNA_02632 at 2782.634 kb on + strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.680 kb on + strand, within CCNA_02632 at 2782.688 kb on - strand at 2782.688 kb on - strand at 2782.688 kb on - strand at 2782.688 kb on - strand at 2782.689 kb on + strand at 2782.690 kb on + strand at 2782.731 kb on - strand at 2782.749 kb on + strand at 2782.757 kb on - strand at 2782.757 kb on - strand at 2782.786 kb on + strand at 2782.802 kb on - strand at 2782.807 kb on - strand at 2782.847 kb on + strand at 2782.849 kb on - strand at 2782.872 kb on - strand at 2782.901 kb on - strand at 2782.931 kb on + strand at 2782.931 kb on + strand at 2782.931 kb on + strand at 2782.939 kb on - strand at 2782.995 kb on - strand at 2782.997 kb on + strand at 2783.007 kb on + strand at 2783.014 kb on + strand at 2783.042 kb on + strand, within CCNA_02633 at 2783.110 kb on + strand, within CCNA_02633 at 2783.135 kb on + strand, within CCNA_02633 at 2783.139 kb on - strand, within CCNA_02633 at 2783.166 kb on + strand, within CCNA_02633 at 2783.202 kb on + strand, within CCNA_02633 at 2783.210 kb on - strand, within CCNA_02633 at 2783.248 kb on + strand, within CCNA_02633 at 2783.248 kb on + strand, within CCNA_02633 at 2783.248 kb on + strand, within CCNA_02633 at 2783.256 kb on - strand, within CCNA_02633 at 2783.256 kb on - strand, within CCNA_02633 at 2783.270 kb on + strand, within CCNA_02633 at 2783.281 kb on + strand, within CCNA_02633 at 2783.289 kb on - strand, within CCNA_02633 at 2783.289 kb on - strand, within CCNA_02633 at 2783.289 kb on - strand at 2783.289 kb on - strand, within CCNA_02633 at 2783.289 kb on - strand, within CCNA_02633 at 2783.291 kb on + strand, within CCNA_02633 at 2783.300 kb on + strand, within CCNA_02633 at 2783.320 kb on + strand, within CCNA_02633 at 2783.320 kb on + strand, within CCNA_02633 at 2783.323 kb on - strand, within CCNA_02633 at 2783.323 kb on - strand, within CCNA_02633 at 2783.323 kb on - strand, within CCNA_02633 at 2783.323 kb on - strand, within CCNA_02633 at 2783.323 kb on - strand, within CCNA_02633 at 2783.373 kb on + strand, within CCNA_02633 at 2783.411 kb on + strand, within CCNA_02633 at 2783.432 kb on + strand, within CCNA_02633 at 2783.456 kb on + strand, within CCNA_02633 at 2783.535 kb on + strand, within CCNA_02633 at 2783.543 kb on - strand, within CCNA_02633 at 2783.621 kb on + strand, within CCNA_02633 at 2783.629 kb on - strand, within CCNA_02633 at 2783.646 kb on - strand, within CCNA_02633 at 2783.648 kb on + strand, within CCNA_02633 at 2783.662 kb on + strand, within CCNA_02633 at 2783.682 kb on + strand, within CCNA_02633 at 2783.682 kb on + strand, within CCNA_02633 at 2783.703 kb on + strand, within CCNA_02633 at 2783.740 kb on + strand, within CCNA_02633
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,781,126 - CCNA_02630 0.23 +0.5 2,781,126 - CCNA_02630 0.23 +0.2 2,781,183 - CCNA_02630 0.34 -1.6 2,781,183 - CCNA_02630 0.34 -1.7 2,781,196 + CCNA_02630 0.36 -0.7 2,781,204 - CCNA_02630 0.38 -0.6 2,781,252 - CCNA_02630 0.47 +0.5 2,781,254 + CCNA_02630 0.48 +0.2 2,781,287 - CCNA_02630 0.54 +0.2 2,781,315 + CCNA_02630 0.59 +0.5 2,781,433 + CCNA_02630 0.82 -1.2 2,781,529 - +0.5 2,781,529 - +0.5 2,781,529 - -0.6 2,781,529 - -0.9 2,781,613 + +1.8 2,781,623 + CCNA_02631 0.15 +0.7 2,781,640 - CCNA_02631 0.25 -1.4 2,781,724 + CCNA_02631 0.73 +0.5 2,781,732 - CCNA_02631 0.78 -2.1 2,781,733 + CCNA_02631 0.78 -0.2 2,781,751 + CCNA_02631 0.89 +0.2 2,781,841 - +0.3 2,781,854 - -0.5 2,781,865 - +0.0 2,781,884 - -2.0 2,781,922 + +0.5 2,781,930 + -0.6 2,781,961 + -0.9 2,781,979 + -2.0 2,781,996 + +0.5 2,781,996 + +0.7 2,781,996 + -0.6 2,781,996 + +1.0 2,781,996 + -1.7 2,781,996 + -0.3 2,782,004 - -0.4 2,782,004 - +0.1 2,782,004 - +0.9 2,782,004 - +0.5 2,782,004 - -0.4 2,782,004 - +0.2 2,782,004 - +1.9 2,782,037 + +0.9 2,782,040 - -2.0 2,782,060 + +0.3 2,782,060 + -0.8 2,782,068 - +0.5 2,782,070 + +0.8 2,782,078 - +1.2 2,782,078 - +0.2 2,782,080 + -1.0 2,782,083 - -0.3 2,782,083 - -2.1 2,782,088 - -0.2 2,782,111 + -0.6 2,782,125 - -0.1 2,782,130 - -0.4 2,782,137 - -2.1 2,782,152 - -1.1 2,782,181 + -0.2 2,782,209 - CCNA_02632 0.14 -1.3 2,782,216 + CCNA_02632 0.15 +1.1 2,782,216 - CCNA_02632 0.15 -2.6 2,782,224 + CCNA_02632 0.17 -0.3 2,782,235 + CCNA_02632 0.18 +1.2 2,782,235 + CCNA_02632 0.18 -0.2 2,782,235 + CCNA_02632 0.18 -0.9 2,782,243 - CCNA_02632 0.20 +1.5 2,782,243 - CCNA_02632 0.20 +0.1 2,782,243 - CCNA_02632 0.20 -1.1 2,782,253 + CCNA_02632 0.21 -1.0 2,782,276 - CCNA_02632 0.25 +1.2 2,782,360 + CCNA_02632 0.38 -1.6 2,782,368 - CCNA_02632 0.40 -1.1 2,782,368 - CCNA_02632 0.40 -0.2 2,782,371 + CCNA_02632 0.40 +1.5 2,782,405 + CCNA_02632 0.45 -2.4 2,782,410 + CCNA_02632 0.46 +0.9 2,782,413 - CCNA_02632 0.47 -0.0 2,782,413 - CCNA_02632 0.47 +0.0 2,782,442 - CCNA_02632 0.51 -1.4 2,782,448 + CCNA_02632 0.52 -1.3 2,782,461 - CCNA_02632 0.54 +1.9 2,782,470 + CCNA_02632 0.56 -1.5 2,782,470 - CCNA_02632 0.56 -1.4 2,782,470 - CCNA_02632 0.56 -1.0 2,782,493 + CCNA_02632 0.59 +0.1 2,782,505 + CCNA_02632 0.61 -0.4 2,782,510 - CCNA_02632 0.62 -2.1 2,782,564 + CCNA_02632 0.71 -0.3 2,782,574 + CCNA_02632 0.72 -1.3 2,782,574 + CCNA_02632 0.72 -0.4 2,782,574 + CCNA_02632 0.72 -0.3 2,782,579 + CCNA_02632 0.73 +1.4 2,782,582 - CCNA_02632 0.74 +1.1 2,782,582 - CCNA_02632 0.74 -1.5 2,782,587 - CCNA_02632 0.74 +0.5 2,782,608 - CCNA_02632 0.78 -1.3 2,782,608 - CCNA_02632 0.78 -1.4 2,782,621 - CCNA_02632 0.80 +1.1 2,782,634 + CCNA_02632 0.82 -0.7 2,782,680 + CCNA_02632 0.89 -1.2 2,782,680 + CCNA_02632 0.89 +0.2 2,782,688 - -0.2 2,782,688 - +1.2 2,782,688 - -0.2 2,782,688 - -1.9 2,782,689 + -1.6 2,782,690 + -1.1 2,782,731 - -0.3 2,782,749 + +0.9 2,782,757 - +0.2 2,782,757 - -1.2 2,782,786 + +0.8 2,782,802 - -0.3 2,782,807 - +1.1 2,782,847 + +0.3 2,782,849 - -0.9 2,782,872 - +0.7 2,782,901 - -0.6 2,782,931 + +0.6 2,782,931 + -1.0 2,782,931 + +4.5 2,782,939 - +0.4 2,782,995 - +1.2 2,782,997 + -0.8 2,783,007 + -0.1 2,783,014 + +1.4 2,783,042 + CCNA_02633 0.10 -1.9 2,783,110 + CCNA_02633 0.13 -0.9 2,783,135 + CCNA_02633 0.14 +0.1 2,783,139 - CCNA_02633 0.14 -0.8 2,783,166 + CCNA_02633 0.16 +1.5 2,783,202 + CCNA_02633 0.17 -0.2 2,783,210 - CCNA_02633 0.17 -1.1 2,783,248 + CCNA_02633 0.19 -0.8 2,783,248 + CCNA_02633 0.19 +0.9 2,783,248 + CCNA_02633 0.19 +1.4 2,783,256 - CCNA_02633 0.19 -0.1 2,783,256 - CCNA_02633 0.19 -1.6 2,783,270 + CCNA_02633 0.20 +0.4 2,783,281 + CCNA_02633 0.20 +0.1 2,783,289 - CCNA_02633 0.21 -0.4 2,783,289 - CCNA_02633 0.21 +0.2 2,783,289 - +1.9 2,783,289 - CCNA_02633 0.21 +1.2 2,783,289 - CCNA_02633 0.21 +1.2 2,783,291 + CCNA_02633 0.21 -0.7 2,783,300 + CCNA_02633 0.21 -1.1 2,783,320 + CCNA_02633 0.22 +0.2 2,783,320 + CCNA_02633 0.22 -0.3 2,783,323 - CCNA_02633 0.22 -1.1 2,783,323 - CCNA_02633 0.22 -0.4 2,783,323 - CCNA_02633 0.22 -0.2 2,783,323 - CCNA_02633 0.22 +1.4 2,783,323 - CCNA_02633 0.22 -1.6 2,783,373 + CCNA_02633 0.24 -1.2 2,783,411 + CCNA_02633 0.26 -2.2 2,783,432 + CCNA_02633 0.27 -1.1 2,783,456 + CCNA_02633 0.28 +0.1 2,783,535 + CCNA_02633 0.31 -0.4 2,783,543 - CCNA_02633 0.32 +2.1 2,783,621 + CCNA_02633 0.35 -0.1 2,783,629 - CCNA_02633 0.35 -0.0 2,783,646 - CCNA_02633 0.36 -0.1 2,783,648 + CCNA_02633 0.36 +0.3 2,783,662 + CCNA_02633 0.37 -1.7 2,783,682 + CCNA_02633 0.37 -0.2 2,783,682 + CCNA_02633 0.37 +1.2 2,783,703 + CCNA_02633 0.38 -1.2 2,783,740 + CCNA_02633 0.40 +0.9
Or see this region's nucleotide sequence