Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02500

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02498 and CCNA_02499 are separated by 12 nucleotidesCCNA_02499 and CCNA_02500 overlap by 4 nucleotidesCCNA_02500 and CCNA_02501 overlap by 4 nucleotides CCNA_02498: CCNA_02498 - YjbJ-related lytic transglycosylase, at 2,648,023 to 2,648,679 _02498 CCNA_02499: CCNA_02499 - type IV secretory pathway, VirB2 protein, at 2,648,692 to 2,649,006 _02499 CCNA_02500: CCNA_02500 - type IV secretory pathway, VirB3 protein, at 2,649,003 to 2,649,287 _02500 CCNA_02501: CCNA_02501 - type IV secretory pathway, VirB4 ATPase, at 2,649,284 to 2,651,668 _02501 Position (kb) 2649 2650Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2648.020 kb on + strandat 2648.028 kb on + strandat 2648.033 kb on + strandat 2648.035 kb on + strandat 2648.043 kb on - strandat 2648.054 kb on + strandat 2648.059 kb on + strandat 2648.080 kb on + strandat 2648.080 kb on + strandat 2648.085 kb on + strandat 2648.086 kb on + strandat 2648.093 kb on - strand, within CCNA_02498at 2648.093 kb on - strand, within CCNA_02498at 2648.093 kb on - strand, within CCNA_02498at 2648.099 kb on - strand, within CCNA_02498at 2648.113 kb on + strand, within CCNA_02498at 2648.126 kb on - strand, within CCNA_02498at 2648.126 kb on - strand, within CCNA_02498at 2648.128 kb on + strand, within CCNA_02498at 2648.128 kb on + strand, within CCNA_02498at 2648.128 kb on + strand, within CCNA_02498at 2648.234 kb on - strand, within CCNA_02498at 2648.236 kb on + strand, within CCNA_02498at 2648.236 kb on + strand, within CCNA_02498at 2648.244 kb on - strand, within CCNA_02498at 2648.262 kb on - strand, within CCNA_02498at 2648.278 kb on - strand, within CCNA_02498at 2648.289 kb on + strand, within CCNA_02498at 2648.297 kb on - strand, within CCNA_02498at 2648.309 kb on + strand, within CCNA_02498at 2648.314 kb on + strand, within CCNA_02498at 2648.314 kb on + strand, within CCNA_02498at 2648.314 kb on + strand, within CCNA_02498at 2648.322 kb on - strand, within CCNA_02498at 2648.328 kb on + strand, within CCNA_02498at 2648.328 kb on + strand, within CCNA_02498at 2648.333 kb on + strand, within CCNA_02498at 2648.333 kb on + strand, within CCNA_02498at 2648.336 kb on - strand, within CCNA_02498at 2648.336 kb on - strand, within CCNA_02498at 2648.336 kb on - strand, within CCNA_02498at 2648.341 kb on - strand, within CCNA_02498at 2648.346 kb on - strand, within CCNA_02498at 2648.350 kb on + strand, within CCNA_02498at 2648.351 kb on - strand, within CCNA_02498at 2648.351 kb on - strand, within CCNA_02498at 2648.380 kb on - strand, within CCNA_02498at 2648.421 kb on + strand, within CCNA_02498at 2648.429 kb on - strand, within CCNA_02498at 2648.437 kb on + strand, within CCNA_02498at 2648.437 kb on + strand, within CCNA_02498at 2648.437 kb on + strand, within CCNA_02498at 2648.437 kb on + strand, within CCNA_02498at 2648.445 kb on - strand, within CCNA_02498at 2648.468 kb on - strand, within CCNA_02498at 2648.509 kb on + strand, within CCNA_02498at 2648.509 kb on + strand, within CCNA_02498at 2648.517 kb on - strand, within CCNA_02498at 2648.517 kb on - strand, within CCNA_02498at 2648.528 kb on - strand, within CCNA_02498at 2648.571 kb on - strand, within CCNA_02498at 2648.591 kb on - strand, within CCNA_02498at 2648.606 kb on - strand, within CCNA_02498at 2648.618 kb on - strandat 2648.618 kb on - strandat 2648.655 kb on - strandat 2648.655 kb on - strandat 2648.673 kb on + strandat 2648.673 kb on + strandat 2648.678 kb on + strandat 2648.686 kb on - strandat 2648.690 kb on + strandat 2648.709 kb on + strandat 2648.719 kb on + strandat 2648.719 kb on + strandat 2648.754 kb on + strand, within CCNA_02499at 2648.754 kb on + strand, within CCNA_02499at 2648.762 kb on - strand, within CCNA_02499at 2648.764 kb on + strand, within CCNA_02499at 2648.764 kb on - strand, within CCNA_02499at 2648.767 kb on - strand, within CCNA_02499at 2648.886 kb on - strand, within CCNA_02499at 2648.913 kb on - strand, within CCNA_02499at 2649.010 kb on + strandat 2649.015 kb on + strandat 2649.016 kb on + strandat 2649.029 kb on - strandat 2649.029 kb on - strandat 2649.036 kb on + strand, within CCNA_02500at 2649.044 kb on - strand, within CCNA_02500at 2649.044 kb on - strand, within CCNA_02500at 2649.069 kb on + strand, within CCNA_02500at 2649.077 kb on - strand, within CCNA_02500at 2649.077 kb on - strand, within CCNA_02500at 2649.077 kb on - strand, within CCNA_02500at 2649.092 kb on - strand, within CCNA_02500at 2649.095 kb on + strand, within CCNA_02500at 2649.158 kb on + strand, within CCNA_02500at 2649.184 kb on - strand, within CCNA_02500at 2649.202 kb on + strand, within CCNA_02500at 2649.202 kb on + strand, within CCNA_02500at 2649.243 kb on - strand, within CCNA_02500at 2649.243 kb on - strand, within CCNA_02500at 2649.256 kb on + strand, within CCNA_02500at 2649.274 kb on - strandat 2649.280 kb on + strandat 2649.281 kb on + strandat 2649.289 kb on - strandat 2649.303 kb on + strandat 2649.303 kb on + strandat 2649.309 kb on + strandat 2649.389 kb on - strandat 2649.404 kb on + strandat 2649.404 kb on + strandat 2649.442 kb on - strandat 2649.459 kb on + strandat 2649.564 kb on - strand, within CCNA_02501at 2649.568 kb on + strand, within CCNA_02501at 2649.568 kb on + strand, within CCNA_02501at 2649.568 kb on + strand, within CCNA_02501at 2649.576 kb on - strand, within CCNA_02501at 2649.576 kb on - strand, within CCNA_02501at 2649.576 kb on - strand, within CCNA_02501at 2649.578 kb on + strand, within CCNA_02501at 2649.578 kb on + strand, within CCNA_02501at 2649.578 kb on + strand, within CCNA_02501at 2649.581 kb on - strand, within CCNA_02501at 2649.590 kb on + strand, within CCNA_02501at 2649.600 kb on - strand, within CCNA_02501at 2649.602 kb on + strand, within CCNA_02501at 2649.602 kb on + strand, within CCNA_02501at 2649.602 kb on + strand, within CCNA_02501at 2649.608 kb on + strand, within CCNA_02501at 2649.613 kb on + strand, within CCNA_02501at 2649.613 kb on + strand, within CCNA_02501at 2649.621 kb on - strand, within CCNA_02501at 2649.621 kb on - strand, within CCNA_02501at 2649.644 kb on - strand, within CCNA_02501at 2649.658 kb on + strand, within CCNA_02501at 2649.658 kb on + strand, within CCNA_02501at 2649.661 kb on + strand, within CCNA_02501at 2649.661 kb on + strand, within CCNA_02501at 2649.663 kb on + strand, within CCNA_02501at 2649.666 kb on - strand, within CCNA_02501at 2649.669 kb on - strand, within CCNA_02501at 2649.671 kb on - strand, within CCNA_02501at 2649.673 kb on + strand, within CCNA_02501at 2649.673 kb on + strand, within CCNA_02501at 2649.676 kb on - strand, within CCNA_02501at 2649.686 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.691 kb on + strand, within CCNA_02501at 2649.694 kb on - strand, within CCNA_02501at 2649.699 kb on - strand, within CCNA_02501at 2649.699 kb on - strand, within CCNA_02501at 2649.718 kb on + strand, within CCNA_02501at 2649.728 kb on + strand, within CCNA_02501at 2649.728 kb on + strand, within CCNA_02501at 2649.728 kb on + strand, within CCNA_02501at 2649.736 kb on - strand, within CCNA_02501at 2649.751 kb on + strand, within CCNA_02501at 2649.759 kb on - strand, within CCNA_02501at 2649.767 kb on + strand, within CCNA_02501at 2649.775 kb on - strand, within CCNA_02501at 2649.777 kb on + strand, within CCNA_02501at 2649.777 kb on + strand, within CCNA_02501at 2649.800 kb on + strand, within CCNA_02501at 2649.818 kb on - strand, within CCNA_02501at 2649.818 kb on - strand, within CCNA_02501at 2649.833 kb on - strand, within CCNA_02501at 2649.833 kb on - strand, within CCNA_02501at 2649.833 kb on - strand, within CCNA_02501at 2649.858 kb on + strand, within CCNA_02501at 2649.866 kb on - strand, within CCNA_02501at 2649.873 kb on - strand, within CCNA_02501at 2649.889 kb on + strand, within CCNA_02501at 2649.901 kb on + strand, within CCNA_02501at 2649.971 kb on - strand, within CCNA_02501at 2649.971 kb on - strand, within CCNA_02501at 2649.971 kb on - strand, within CCNA_02501at 2649.971 kb on - strand, within CCNA_02501at 2649.978 kb on + strand, within CCNA_02501at 2650.039 kb on + strand, within CCNA_02501at 2650.047 kb on - strand, within CCNA_02501at 2650.061 kb on + strand, within CCNA_02501at 2650.111 kb on - strand, within CCNA_02501at 2650.132 kb on + strand, within CCNA_02501at 2650.156 kb on + strand, within CCNA_02501at 2650.157 kb on + strand, within CCNA_02501at 2650.158 kb on + strand, within CCNA_02501at 2650.158 kb on + strand, within CCNA_02501at 2650.158 kb on + strand, within CCNA_02501at 2650.158 kb on + strand, within CCNA_02501at 2650.163 kb on + strand, within CCNA_02501at 2650.184 kb on + strand, within CCNA_02501at 2650.209 kb on + strand, within CCNA_02501at 2650.216 kb on + strand, within CCNA_02501at 2650.224 kb on - strand, within CCNA_02501at 2650.224 kb on - strand, within CCNA_02501at 2650.259 kb on - strand, within CCNA_02501at 2650.268 kb on + strand, within CCNA_02501at 2650.270 kb on + strand, within CCNA_02501at 2650.276 kb on - strand, within CCNA_02501at 2650.283 kb on - strand, within CCNA_02501at 2650.285 kb on + strand, within CCNA_02501at 2650.285 kb on + strand, within CCNA_02501at 2650.285 kb on + strand, within CCNA_02501

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,648,020 + +1.1
2,648,028 + +0.9
2,648,033 + -1.8
2,648,035 + +0.3
2,648,043 - -1.3
2,648,054 + +1.8
2,648,059 + -1.4
2,648,080 + -0.3
2,648,080 + -0.4
2,648,085 + -0.1
2,648,086 + +1.6
2,648,093 - CCNA_02498 0.11 -2.6
2,648,093 - CCNA_02498 0.11 -0.2
2,648,093 - CCNA_02498 0.11 -2.0
2,648,099 - CCNA_02498 0.12 -1.3
2,648,113 + CCNA_02498 0.14 +0.5
2,648,126 - CCNA_02498 0.16 -0.1
2,648,126 - CCNA_02498 0.16 -0.4
2,648,128 + CCNA_02498 0.16 -0.7
2,648,128 + CCNA_02498 0.16 -2.3
2,648,128 + CCNA_02498 0.16 -1.3
2,648,234 - CCNA_02498 0.32 -0.9
2,648,236 + CCNA_02498 0.32 +0.3
2,648,236 + CCNA_02498 0.32 +0.4
2,648,244 - CCNA_02498 0.34 -0.2
2,648,262 - CCNA_02498 0.36 +0.6
2,648,278 - CCNA_02498 0.39 -0.2
2,648,289 + CCNA_02498 0.40 +1.9
2,648,297 - CCNA_02498 0.42 +2.8
2,648,309 + CCNA_02498 0.44 -0.1
2,648,314 + CCNA_02498 0.44 -0.5
2,648,314 + CCNA_02498 0.44 +0.5
2,648,314 + CCNA_02498 0.44 +0.9
2,648,322 - CCNA_02498 0.46 -1.7
2,648,328 + CCNA_02498 0.46 +0.7
2,648,328 + CCNA_02498 0.46 +0.5
2,648,333 + CCNA_02498 0.47 +1.4
2,648,333 + CCNA_02498 0.47 +1.3
2,648,336 - CCNA_02498 0.48 -1.8
2,648,336 - CCNA_02498 0.48 -1.3
2,648,336 - CCNA_02498 0.48 +1.3
2,648,341 - CCNA_02498 0.48 +0.1
2,648,346 - CCNA_02498 0.49 -0.1
2,648,350 + CCNA_02498 0.50 +0.6
2,648,351 - CCNA_02498 0.50 -2.2
2,648,351 - CCNA_02498 0.50 +0.1
2,648,380 - CCNA_02498 0.54 -0.1
2,648,421 + CCNA_02498 0.61 +0.6
2,648,429 - CCNA_02498 0.62 -1.4
2,648,437 + CCNA_02498 0.63 +0.1
2,648,437 + CCNA_02498 0.63 -1.1
2,648,437 + CCNA_02498 0.63 -1.2
2,648,437 + CCNA_02498 0.63 -1.0
2,648,445 - CCNA_02498 0.64 -0.5
2,648,468 - CCNA_02498 0.68 -1.3
2,648,509 + CCNA_02498 0.74 +1.9
2,648,509 + CCNA_02498 0.74 +0.9
2,648,517 - CCNA_02498 0.75 -2.3
2,648,517 - CCNA_02498 0.75 +0.5
2,648,528 - CCNA_02498 0.77 +0.5
2,648,571 - CCNA_02498 0.83 -1.2
2,648,591 - CCNA_02498 0.86 -1.9
2,648,606 - CCNA_02498 0.89 -0.0
2,648,618 - +1.6
2,648,618 - -0.6
2,648,655 - +0.1
2,648,655 - -0.2
2,648,673 + -0.4
2,648,673 + +0.8
2,648,678 + -1.6
2,648,686 - +0.5
2,648,690 + +0.1
2,648,709 + +0.3
2,648,719 + -0.9
2,648,719 + +0.1
2,648,754 + CCNA_02499 0.20 -0.8
2,648,754 + CCNA_02499 0.20 +1.5
2,648,762 - CCNA_02499 0.22 -1.5
2,648,764 + CCNA_02499 0.23 +0.3
2,648,764 - CCNA_02499 0.23 +1.1
2,648,767 - CCNA_02499 0.24 +0.3
2,648,886 - CCNA_02499 0.62 -1.4
2,648,913 - CCNA_02499 0.70 -0.3
2,649,010 + -0.4
2,649,015 + +2.1
2,649,016 + -1.1
2,649,029 - -1.5
2,649,029 - +0.1
2,649,036 + CCNA_02500 0.12 -0.8
2,649,044 - CCNA_02500 0.14 +0.5
2,649,044 - CCNA_02500 0.14 -0.4
2,649,069 + CCNA_02500 0.23 -0.5
2,649,077 - CCNA_02500 0.26 -1.6
2,649,077 - CCNA_02500 0.26 +0.1
2,649,077 - CCNA_02500 0.26 -0.6
2,649,092 - CCNA_02500 0.31 -1.6
2,649,095 + CCNA_02500 0.32 -1.1
2,649,158 + CCNA_02500 0.54 -1.5
2,649,184 - CCNA_02500 0.64 +0.3
2,649,202 + CCNA_02500 0.70 -0.7
2,649,202 + CCNA_02500 0.70 -0.7
2,649,243 - CCNA_02500 0.84 -0.8
2,649,243 - CCNA_02500 0.84 -2.0
2,649,256 + CCNA_02500 0.89 +0.1
2,649,274 - -1.2
2,649,280 + +0.4
2,649,281 + -2.0
2,649,289 - +0.3
2,649,303 + -0.2
2,649,303 + -1.3
2,649,309 + -2.6
2,649,389 - +0.9
2,649,404 + +1.9
2,649,404 + -0.8
2,649,442 - -0.1
2,649,459 + +0.5
2,649,564 - CCNA_02501 0.12 -0.2
2,649,568 + CCNA_02501 0.12 -0.9
2,649,568 + CCNA_02501 0.12 -0.2
2,649,568 + CCNA_02501 0.12 +1.2
2,649,576 - CCNA_02501 0.12 -1.5
2,649,576 - CCNA_02501 0.12 -1.2
2,649,576 - CCNA_02501 0.12 -1.1
2,649,578 + CCNA_02501 0.12 +0.9
2,649,578 + CCNA_02501 0.12 -2.0
2,649,578 + CCNA_02501 0.12 +0.3
2,649,581 - CCNA_02501 0.12 -2.2
2,649,590 + CCNA_02501 0.13 -2.7
2,649,600 - CCNA_02501 0.13 +1.1
2,649,602 + CCNA_02501 0.13 -2.1
2,649,602 + CCNA_02501 0.13 -0.4
2,649,602 + CCNA_02501 0.13 +0.8
2,649,608 + CCNA_02501 0.14 -1.1
2,649,613 + CCNA_02501 0.14 +0.2
2,649,613 + CCNA_02501 0.14 -1.5
2,649,621 - CCNA_02501 0.14 -1.1
2,649,621 - CCNA_02501 0.14 -0.3
2,649,644 - CCNA_02501 0.15 -0.1
2,649,658 + CCNA_02501 0.16 -1.0
2,649,658 + CCNA_02501 0.16 +0.2
2,649,661 + CCNA_02501 0.16 -2.1
2,649,661 + CCNA_02501 0.16 -0.7
2,649,663 + CCNA_02501 0.16 -0.9
2,649,666 - CCNA_02501 0.16 -0.9
2,649,669 - CCNA_02501 0.16 +0.2
2,649,671 - CCNA_02501 0.16 -0.3
2,649,673 + CCNA_02501 0.16 -1.2
2,649,673 + CCNA_02501 0.16 +1.3
2,649,676 - CCNA_02501 0.16 -1.3
2,649,686 + CCNA_02501 0.17 -0.8
2,649,691 + CCNA_02501 0.17 -1.2
2,649,691 + CCNA_02501 0.17 +0.2
2,649,691 + CCNA_02501 0.17 -0.7
2,649,691 + CCNA_02501 0.17 -0.8
2,649,691 + CCNA_02501 0.17 -1.4
2,649,691 + CCNA_02501 0.17 -0.2
2,649,691 + CCNA_02501 0.17 -0.1
2,649,691 + CCNA_02501 0.17 -0.7
2,649,694 - CCNA_02501 0.17 +0.3
2,649,699 - CCNA_02501 0.17 -1.2
2,649,699 - CCNA_02501 0.17 +1.2
2,649,718 + CCNA_02501 0.18 -2.2
2,649,728 + CCNA_02501 0.19 +1.8
2,649,728 + CCNA_02501 0.19 +1.2
2,649,728 + CCNA_02501 0.19 -0.8
2,649,736 - CCNA_02501 0.19 -0.5
2,649,751 + CCNA_02501 0.20 -1.5
2,649,759 - CCNA_02501 0.20 +0.3
2,649,767 + CCNA_02501 0.20 -0.7
2,649,775 - CCNA_02501 0.21 +0.3
2,649,777 + CCNA_02501 0.21 +1.0
2,649,777 + CCNA_02501 0.21 +1.8
2,649,800 + CCNA_02501 0.22 -0.7
2,649,818 - CCNA_02501 0.22 -0.6
2,649,818 - CCNA_02501 0.22 -1.4
2,649,833 - CCNA_02501 0.23 -1.0
2,649,833 - CCNA_02501 0.23 -0.7
2,649,833 - CCNA_02501 0.23 +0.5
2,649,858 + CCNA_02501 0.24 -0.5
2,649,866 - CCNA_02501 0.24 -0.6
2,649,873 - CCNA_02501 0.25 -2.1
2,649,889 + CCNA_02501 0.25 -1.1
2,649,901 + CCNA_02501 0.26 -2.3
2,649,971 - CCNA_02501 0.29 +1.1
2,649,971 - CCNA_02501 0.29 -2.6
2,649,971 - CCNA_02501 0.29 -0.3
2,649,971 - CCNA_02501 0.29 +0.2
2,649,978 + CCNA_02501 0.29 -1.7
2,650,039 + CCNA_02501 0.32 +0.8
2,650,047 - CCNA_02501 0.32 -0.3
2,650,061 + CCNA_02501 0.33 -0.3
2,650,111 - CCNA_02501 0.35 +0.4
2,650,132 + CCNA_02501 0.36 -0.9
2,650,156 + CCNA_02501 0.37 -0.7
2,650,157 + CCNA_02501 0.37 +0.2
2,650,158 + CCNA_02501 0.37 -1.7
2,650,158 + CCNA_02501 0.37 -1.6
2,650,158 + CCNA_02501 0.37 -1.2
2,650,158 + CCNA_02501 0.37 -0.3
2,650,163 + CCNA_02501 0.37 +2.1
2,650,184 + CCNA_02501 0.38 +1.5
2,650,209 + CCNA_02501 0.39 -0.2
2,650,216 + CCNA_02501 0.39 -0.2
2,650,224 - CCNA_02501 0.39 -0.5
2,650,224 - CCNA_02501 0.39 -0.5
2,650,259 - CCNA_02501 0.41 +0.2
2,650,268 + CCNA_02501 0.41 +0.1
2,650,270 + CCNA_02501 0.41 -0.0
2,650,276 - CCNA_02501 0.42 +0.2
2,650,283 - CCNA_02501 0.42 +0.6
2,650,285 + CCNA_02501 0.42 +0.7
2,650,285 + CCNA_02501 0.42 +1.5
2,650,285 + CCNA_02501 0.42 -0.2

Or see this region's nucleotide sequence