Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02498 and CCNA_02499 are separated by 12 nucleotides CCNA_02499 and CCNA_02500 overlap by 4 nucleotides CCNA_02500 and CCNA_02501 overlap by 4 nucleotides
CCNA_02498: CCNA_02498 - YjbJ-related lytic transglycosylase, at 2,648,023 to 2,648,679
_02498
CCNA_02499: CCNA_02499 - type IV secretory pathway, VirB2 protein, at 2,648,692 to 2,649,006
_02499
CCNA_02500: CCNA_02500 - type IV secretory pathway, VirB3 protein, at 2,649,003 to 2,649,287
_02500
CCNA_02501: CCNA_02501 - type IV secretory pathway, VirB4 ATPase, at 2,649,284 to 2,651,668
_02501
Position (kb)
2649
2650 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2648.020 kb on + strand at 2648.028 kb on + strand at 2648.033 kb on + strand at 2648.035 kb on + strand at 2648.043 kb on - strand at 2648.054 kb on + strand at 2648.059 kb on + strand at 2648.080 kb on + strand at 2648.080 kb on + strand at 2648.085 kb on + strand at 2648.086 kb on + strand at 2648.093 kb on - strand, within CCNA_02498 at 2648.093 kb on - strand, within CCNA_02498 at 2648.093 kb on - strand, within CCNA_02498 at 2648.099 kb on - strand, within CCNA_02498 at 2648.113 kb on + strand, within CCNA_02498 at 2648.126 kb on - strand, within CCNA_02498 at 2648.126 kb on - strand, within CCNA_02498 at 2648.128 kb on + strand, within CCNA_02498 at 2648.128 kb on + strand, within CCNA_02498 at 2648.128 kb on + strand, within CCNA_02498 at 2648.234 kb on - strand, within CCNA_02498 at 2648.236 kb on + strand, within CCNA_02498 at 2648.236 kb on + strand, within CCNA_02498 at 2648.244 kb on - strand, within CCNA_02498 at 2648.262 kb on - strand, within CCNA_02498 at 2648.278 kb on - strand, within CCNA_02498 at 2648.289 kb on + strand, within CCNA_02498 at 2648.297 kb on - strand, within CCNA_02498 at 2648.309 kb on + strand, within CCNA_02498 at 2648.314 kb on + strand, within CCNA_02498 at 2648.314 kb on + strand, within CCNA_02498 at 2648.314 kb on + strand, within CCNA_02498 at 2648.322 kb on - strand, within CCNA_02498 at 2648.328 kb on + strand, within CCNA_02498 at 2648.328 kb on + strand, within CCNA_02498 at 2648.333 kb on + strand, within CCNA_02498 at 2648.333 kb on + strand, within CCNA_02498 at 2648.336 kb on - strand, within CCNA_02498 at 2648.336 kb on - strand, within CCNA_02498 at 2648.336 kb on - strand, within CCNA_02498 at 2648.341 kb on - strand, within CCNA_02498 at 2648.346 kb on - strand, within CCNA_02498 at 2648.350 kb on + strand, within CCNA_02498 at 2648.351 kb on - strand, within CCNA_02498 at 2648.351 kb on - strand, within CCNA_02498 at 2648.380 kb on - strand, within CCNA_02498 at 2648.421 kb on + strand, within CCNA_02498 at 2648.429 kb on - strand, within CCNA_02498 at 2648.437 kb on + strand, within CCNA_02498 at 2648.437 kb on + strand, within CCNA_02498 at 2648.437 kb on + strand, within CCNA_02498 at 2648.437 kb on + strand, within CCNA_02498 at 2648.445 kb on - strand, within CCNA_02498 at 2648.468 kb on - strand, within CCNA_02498 at 2648.509 kb on + strand, within CCNA_02498 at 2648.509 kb on + strand, within CCNA_02498 at 2648.517 kb on - strand, within CCNA_02498 at 2648.517 kb on - strand, within CCNA_02498 at 2648.528 kb on - strand, within CCNA_02498 at 2648.571 kb on - strand, within CCNA_02498 at 2648.591 kb on - strand, within CCNA_02498 at 2648.606 kb on - strand, within CCNA_02498 at 2648.618 kb on - strand at 2648.618 kb on - strand at 2648.655 kb on - strand at 2648.655 kb on - strand at 2648.673 kb on + strand at 2648.673 kb on + strand at 2648.678 kb on + strand at 2648.686 kb on - strand at 2648.690 kb on + strand at 2648.709 kb on + strand at 2648.719 kb on + strand at 2648.719 kb on + strand at 2648.754 kb on + strand, within CCNA_02499 at 2648.754 kb on + strand, within CCNA_02499 at 2648.762 kb on - strand, within CCNA_02499 at 2648.764 kb on + strand, within CCNA_02499 at 2648.764 kb on - strand, within CCNA_02499 at 2648.767 kb on - strand, within CCNA_02499 at 2648.886 kb on - strand, within CCNA_02499 at 2648.913 kb on - strand, within CCNA_02499 at 2649.010 kb on + strand at 2649.015 kb on + strand at 2649.016 kb on + strand at 2649.029 kb on - strand at 2649.029 kb on - strand at 2649.036 kb on + strand, within CCNA_02500 at 2649.044 kb on - strand, within CCNA_02500 at 2649.044 kb on - strand, within CCNA_02500 at 2649.069 kb on + strand, within CCNA_02500 at 2649.077 kb on - strand, within CCNA_02500 at 2649.077 kb on - strand, within CCNA_02500 at 2649.077 kb on - strand, within CCNA_02500 at 2649.092 kb on - strand, within CCNA_02500 at 2649.095 kb on + strand, within CCNA_02500 at 2649.158 kb on + strand, within CCNA_02500 at 2649.184 kb on - strand, within CCNA_02500 at 2649.202 kb on + strand, within CCNA_02500 at 2649.202 kb on + strand, within CCNA_02500 at 2649.243 kb on - strand, within CCNA_02500 at 2649.243 kb on - strand, within CCNA_02500 at 2649.256 kb on + strand, within CCNA_02500 at 2649.274 kb on - strand at 2649.280 kb on + strand at 2649.281 kb on + strand at 2649.289 kb on - strand at 2649.303 kb on + strand at 2649.303 kb on + strand at 2649.309 kb on + strand at 2649.389 kb on - strand at 2649.404 kb on + strand at 2649.404 kb on + strand at 2649.442 kb on - strand at 2649.459 kb on + strand at 2649.564 kb on - strand, within CCNA_02501 at 2649.568 kb on + strand, within CCNA_02501 at 2649.568 kb on + strand, within CCNA_02501 at 2649.568 kb on + strand, within CCNA_02501 at 2649.576 kb on - strand, within CCNA_02501 at 2649.576 kb on - strand, within CCNA_02501 at 2649.576 kb on - strand, within CCNA_02501 at 2649.578 kb on + strand, within CCNA_02501 at 2649.578 kb on + strand, within CCNA_02501 at 2649.578 kb on + strand, within CCNA_02501 at 2649.581 kb on - strand, within CCNA_02501 at 2649.590 kb on + strand, within CCNA_02501 at 2649.600 kb on - strand, within CCNA_02501 at 2649.602 kb on + strand, within CCNA_02501 at 2649.602 kb on + strand, within CCNA_02501 at 2649.602 kb on + strand, within CCNA_02501 at 2649.608 kb on + strand, within CCNA_02501 at 2649.613 kb on + strand, within CCNA_02501 at 2649.613 kb on + strand, within CCNA_02501 at 2649.621 kb on - strand, within CCNA_02501 at 2649.621 kb on - strand, within CCNA_02501 at 2649.644 kb on - strand, within CCNA_02501 at 2649.658 kb on + strand, within CCNA_02501 at 2649.658 kb on + strand, within CCNA_02501 at 2649.661 kb on + strand, within CCNA_02501 at 2649.661 kb on + strand, within CCNA_02501 at 2649.663 kb on + strand, within CCNA_02501 at 2649.666 kb on - strand, within CCNA_02501 at 2649.669 kb on - strand, within CCNA_02501 at 2649.671 kb on - strand, within CCNA_02501 at 2649.673 kb on + strand, within CCNA_02501 at 2649.673 kb on + strand, within CCNA_02501 at 2649.676 kb on - strand, within CCNA_02501 at 2649.686 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.691 kb on + strand, within CCNA_02501 at 2649.694 kb on - strand, within CCNA_02501 at 2649.699 kb on - strand, within CCNA_02501 at 2649.699 kb on - strand, within CCNA_02501 at 2649.718 kb on + strand, within CCNA_02501 at 2649.728 kb on + strand, within CCNA_02501 at 2649.728 kb on + strand, within CCNA_02501 at 2649.728 kb on + strand, within CCNA_02501 at 2649.736 kb on - strand, within CCNA_02501 at 2649.751 kb on + strand, within CCNA_02501 at 2649.759 kb on - strand, within CCNA_02501 at 2649.767 kb on + strand, within CCNA_02501 at 2649.775 kb on - strand, within CCNA_02501 at 2649.777 kb on + strand, within CCNA_02501 at 2649.777 kb on + strand, within CCNA_02501 at 2649.800 kb on + strand, within CCNA_02501 at 2649.818 kb on - strand, within CCNA_02501 at 2649.818 kb on - strand, within CCNA_02501 at 2649.833 kb on - strand, within CCNA_02501 at 2649.833 kb on - strand, within CCNA_02501 at 2649.833 kb on - strand, within CCNA_02501 at 2649.858 kb on + strand, within CCNA_02501 at 2649.866 kb on - strand, within CCNA_02501 at 2649.873 kb on - strand, within CCNA_02501 at 2649.889 kb on + strand, within CCNA_02501 at 2649.901 kb on + strand, within CCNA_02501 at 2649.971 kb on - strand, within CCNA_02501 at 2649.971 kb on - strand, within CCNA_02501 at 2649.971 kb on - strand, within CCNA_02501 at 2649.971 kb on - strand, within CCNA_02501 at 2649.978 kb on + strand, within CCNA_02501 at 2650.039 kb on + strand, within CCNA_02501 at 2650.047 kb on - strand, within CCNA_02501 at 2650.061 kb on + strand, within CCNA_02501 at 2650.111 kb on - strand, within CCNA_02501 at 2650.132 kb on + strand, within CCNA_02501 at 2650.156 kb on + strand, within CCNA_02501 at 2650.157 kb on + strand, within CCNA_02501 at 2650.158 kb on + strand, within CCNA_02501 at 2650.158 kb on + strand, within CCNA_02501 at 2650.158 kb on + strand, within CCNA_02501 at 2650.158 kb on + strand, within CCNA_02501 at 2650.163 kb on + strand, within CCNA_02501 at 2650.184 kb on + strand, within CCNA_02501 at 2650.209 kb on + strand, within CCNA_02501 at 2650.216 kb on + strand, within CCNA_02501 at 2650.224 kb on - strand, within CCNA_02501 at 2650.224 kb on - strand, within CCNA_02501 at 2650.259 kb on - strand, within CCNA_02501 at 2650.268 kb on + strand, within CCNA_02501 at 2650.270 kb on + strand, within CCNA_02501 at 2650.276 kb on - strand, within CCNA_02501 at 2650.283 kb on - strand, within CCNA_02501 at 2650.285 kb on + strand, within CCNA_02501 at 2650.285 kb on + strand, within CCNA_02501 at 2650.285 kb on + strand, within CCNA_02501
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,648,020 + +1.1 2,648,028 + +0.9 2,648,033 + -1.8 2,648,035 + +0.3 2,648,043 - -1.3 2,648,054 + +1.8 2,648,059 + -1.4 2,648,080 + -0.3 2,648,080 + -0.4 2,648,085 + -0.1 2,648,086 + +1.6 2,648,093 - CCNA_02498 0.11 -2.6 2,648,093 - CCNA_02498 0.11 -0.2 2,648,093 - CCNA_02498 0.11 -2.0 2,648,099 - CCNA_02498 0.12 -1.3 2,648,113 + CCNA_02498 0.14 +0.5 2,648,126 - CCNA_02498 0.16 -0.1 2,648,126 - CCNA_02498 0.16 -0.4 2,648,128 + CCNA_02498 0.16 -0.7 2,648,128 + CCNA_02498 0.16 -2.3 2,648,128 + CCNA_02498 0.16 -1.3 2,648,234 - CCNA_02498 0.32 -0.9 2,648,236 + CCNA_02498 0.32 +0.3 2,648,236 + CCNA_02498 0.32 +0.4 2,648,244 - CCNA_02498 0.34 -0.2 2,648,262 - CCNA_02498 0.36 +0.6 2,648,278 - CCNA_02498 0.39 -0.2 2,648,289 + CCNA_02498 0.40 +1.9 2,648,297 - CCNA_02498 0.42 +2.8 2,648,309 + CCNA_02498 0.44 -0.1 2,648,314 + CCNA_02498 0.44 -0.5 2,648,314 + CCNA_02498 0.44 +0.5 2,648,314 + CCNA_02498 0.44 +0.9 2,648,322 - CCNA_02498 0.46 -1.7 2,648,328 + CCNA_02498 0.46 +0.7 2,648,328 + CCNA_02498 0.46 +0.5 2,648,333 + CCNA_02498 0.47 +1.4 2,648,333 + CCNA_02498 0.47 +1.3 2,648,336 - CCNA_02498 0.48 -1.8 2,648,336 - CCNA_02498 0.48 -1.3 2,648,336 - CCNA_02498 0.48 +1.3 2,648,341 - CCNA_02498 0.48 +0.1 2,648,346 - CCNA_02498 0.49 -0.1 2,648,350 + CCNA_02498 0.50 +0.6 2,648,351 - CCNA_02498 0.50 -2.2 2,648,351 - CCNA_02498 0.50 +0.1 2,648,380 - CCNA_02498 0.54 -0.1 2,648,421 + CCNA_02498 0.61 +0.6 2,648,429 - CCNA_02498 0.62 -1.4 2,648,437 + CCNA_02498 0.63 +0.1 2,648,437 + CCNA_02498 0.63 -1.1 2,648,437 + CCNA_02498 0.63 -1.2 2,648,437 + CCNA_02498 0.63 -1.0 2,648,445 - CCNA_02498 0.64 -0.5 2,648,468 - CCNA_02498 0.68 -1.3 2,648,509 + CCNA_02498 0.74 +1.9 2,648,509 + CCNA_02498 0.74 +0.9 2,648,517 - CCNA_02498 0.75 -2.3 2,648,517 - CCNA_02498 0.75 +0.5 2,648,528 - CCNA_02498 0.77 +0.5 2,648,571 - CCNA_02498 0.83 -1.2 2,648,591 - CCNA_02498 0.86 -1.9 2,648,606 - CCNA_02498 0.89 -0.0 2,648,618 - +1.6 2,648,618 - -0.6 2,648,655 - +0.1 2,648,655 - -0.2 2,648,673 + -0.4 2,648,673 + +0.8 2,648,678 + -1.6 2,648,686 - +0.5 2,648,690 + +0.1 2,648,709 + +0.3 2,648,719 + -0.9 2,648,719 + +0.1 2,648,754 + CCNA_02499 0.20 -0.8 2,648,754 + CCNA_02499 0.20 +1.5 2,648,762 - CCNA_02499 0.22 -1.5 2,648,764 + CCNA_02499 0.23 +0.3 2,648,764 - CCNA_02499 0.23 +1.1 2,648,767 - CCNA_02499 0.24 +0.3 2,648,886 - CCNA_02499 0.62 -1.4 2,648,913 - CCNA_02499 0.70 -0.3 2,649,010 + -0.4 2,649,015 + +2.1 2,649,016 + -1.1 2,649,029 - -1.5 2,649,029 - +0.1 2,649,036 + CCNA_02500 0.12 -0.8 2,649,044 - CCNA_02500 0.14 +0.5 2,649,044 - CCNA_02500 0.14 -0.4 2,649,069 + CCNA_02500 0.23 -0.5 2,649,077 - CCNA_02500 0.26 -1.6 2,649,077 - CCNA_02500 0.26 +0.1 2,649,077 - CCNA_02500 0.26 -0.6 2,649,092 - CCNA_02500 0.31 -1.6 2,649,095 + CCNA_02500 0.32 -1.1 2,649,158 + CCNA_02500 0.54 -1.5 2,649,184 - CCNA_02500 0.64 +0.3 2,649,202 + CCNA_02500 0.70 -0.7 2,649,202 + CCNA_02500 0.70 -0.7 2,649,243 - CCNA_02500 0.84 -0.8 2,649,243 - CCNA_02500 0.84 -2.0 2,649,256 + CCNA_02500 0.89 +0.1 2,649,274 - -1.2 2,649,280 + +0.4 2,649,281 + -2.0 2,649,289 - +0.3 2,649,303 + -0.2 2,649,303 + -1.3 2,649,309 + -2.6 2,649,389 - +0.9 2,649,404 + +1.9 2,649,404 + -0.8 2,649,442 - -0.1 2,649,459 + +0.5 2,649,564 - CCNA_02501 0.12 -0.2 2,649,568 + CCNA_02501 0.12 -0.9 2,649,568 + CCNA_02501 0.12 -0.2 2,649,568 + CCNA_02501 0.12 +1.2 2,649,576 - CCNA_02501 0.12 -1.5 2,649,576 - CCNA_02501 0.12 -1.2 2,649,576 - CCNA_02501 0.12 -1.1 2,649,578 + CCNA_02501 0.12 +0.9 2,649,578 + CCNA_02501 0.12 -2.0 2,649,578 + CCNA_02501 0.12 +0.3 2,649,581 - CCNA_02501 0.12 -2.2 2,649,590 + CCNA_02501 0.13 -2.7 2,649,600 - CCNA_02501 0.13 +1.1 2,649,602 + CCNA_02501 0.13 -2.1 2,649,602 + CCNA_02501 0.13 -0.4 2,649,602 + CCNA_02501 0.13 +0.8 2,649,608 + CCNA_02501 0.14 -1.1 2,649,613 + CCNA_02501 0.14 +0.2 2,649,613 + CCNA_02501 0.14 -1.5 2,649,621 - CCNA_02501 0.14 -1.1 2,649,621 - CCNA_02501 0.14 -0.3 2,649,644 - CCNA_02501 0.15 -0.1 2,649,658 + CCNA_02501 0.16 -1.0 2,649,658 + CCNA_02501 0.16 +0.2 2,649,661 + CCNA_02501 0.16 -2.1 2,649,661 + CCNA_02501 0.16 -0.7 2,649,663 + CCNA_02501 0.16 -0.9 2,649,666 - CCNA_02501 0.16 -0.9 2,649,669 - CCNA_02501 0.16 +0.2 2,649,671 - CCNA_02501 0.16 -0.3 2,649,673 + CCNA_02501 0.16 -1.2 2,649,673 + CCNA_02501 0.16 +1.3 2,649,676 - CCNA_02501 0.16 -1.3 2,649,686 + CCNA_02501 0.17 -0.8 2,649,691 + CCNA_02501 0.17 -1.2 2,649,691 + CCNA_02501 0.17 +0.2 2,649,691 + CCNA_02501 0.17 -0.7 2,649,691 + CCNA_02501 0.17 -0.8 2,649,691 + CCNA_02501 0.17 -1.4 2,649,691 + CCNA_02501 0.17 -0.2 2,649,691 + CCNA_02501 0.17 -0.1 2,649,691 + CCNA_02501 0.17 -0.7 2,649,694 - CCNA_02501 0.17 +0.3 2,649,699 - CCNA_02501 0.17 -1.2 2,649,699 - CCNA_02501 0.17 +1.2 2,649,718 + CCNA_02501 0.18 -2.2 2,649,728 + CCNA_02501 0.19 +1.8 2,649,728 + CCNA_02501 0.19 +1.2 2,649,728 + CCNA_02501 0.19 -0.8 2,649,736 - CCNA_02501 0.19 -0.5 2,649,751 + CCNA_02501 0.20 -1.5 2,649,759 - CCNA_02501 0.20 +0.3 2,649,767 + CCNA_02501 0.20 -0.7 2,649,775 - CCNA_02501 0.21 +0.3 2,649,777 + CCNA_02501 0.21 +1.0 2,649,777 + CCNA_02501 0.21 +1.8 2,649,800 + CCNA_02501 0.22 -0.7 2,649,818 - CCNA_02501 0.22 -0.6 2,649,818 - CCNA_02501 0.22 -1.4 2,649,833 - CCNA_02501 0.23 -1.0 2,649,833 - CCNA_02501 0.23 -0.7 2,649,833 - CCNA_02501 0.23 +0.5 2,649,858 + CCNA_02501 0.24 -0.5 2,649,866 - CCNA_02501 0.24 -0.6 2,649,873 - CCNA_02501 0.25 -2.1 2,649,889 + CCNA_02501 0.25 -1.1 2,649,901 + CCNA_02501 0.26 -2.3 2,649,971 - CCNA_02501 0.29 +1.1 2,649,971 - CCNA_02501 0.29 -2.6 2,649,971 - CCNA_02501 0.29 -0.3 2,649,971 - CCNA_02501 0.29 +0.2 2,649,978 + CCNA_02501 0.29 -1.7 2,650,039 + CCNA_02501 0.32 +0.8 2,650,047 - CCNA_02501 0.32 -0.3 2,650,061 + CCNA_02501 0.33 -0.3 2,650,111 - CCNA_02501 0.35 +0.4 2,650,132 + CCNA_02501 0.36 -0.9 2,650,156 + CCNA_02501 0.37 -0.7 2,650,157 + CCNA_02501 0.37 +0.2 2,650,158 + CCNA_02501 0.37 -1.7 2,650,158 + CCNA_02501 0.37 -1.6 2,650,158 + CCNA_02501 0.37 -1.2 2,650,158 + CCNA_02501 0.37 -0.3 2,650,163 + CCNA_02501 0.37 +2.1 2,650,184 + CCNA_02501 0.38 +1.5 2,650,209 + CCNA_02501 0.39 -0.2 2,650,216 + CCNA_02501 0.39 -0.2 2,650,224 - CCNA_02501 0.39 -0.5 2,650,224 - CCNA_02501 0.39 -0.5 2,650,259 - CCNA_02501 0.41 +0.2 2,650,268 + CCNA_02501 0.41 +0.1 2,650,270 + CCNA_02501 0.41 -0.0 2,650,276 - CCNA_02501 0.42 +0.2 2,650,283 - CCNA_02501 0.42 +0.6 2,650,285 + CCNA_02501 0.42 +0.7 2,650,285 + CCNA_02501 0.42 +1.5 2,650,285 + CCNA_02501 0.42 -0.2
Or see this region's nucleotide sequence