Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02490 and CCNA_02491 are separated by 9 nucleotides CCNA_02491 and CCNA_02492 overlap by 8 nucleotides CCNA_02492 and CCNA_02493 are separated by 19 nucleotides
CCNA_02490: CCNA_02490 - 3-ketoacyl-CoA thiolase, at 2,637,765 to 2,638,964
_02490
CCNA_02491: CCNA_02491 - protocatechuate 3,4-dioxygenase beta chain, at 2,638,974 to 2,639,681
_02491
CCNA_02492: CCNA_02492 - protocatechuate 3,4-dioxygenase alpha chain, at 2,639,674 to 2,640,324
_02492
CCNA_02493: CCNA_02493 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,640,344 to 2,641,492
_02493
Position (kb)
2638
2639
2640 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2638.283 kb on + strand, within CCNA_02490 at 2638.302 kb on + strand, within CCNA_02490 at 2638.312 kb on + strand, within CCNA_02490 at 2638.516 kb on + strand, within CCNA_02490 at 2638.524 kb on + strand, within CCNA_02490 at 2638.547 kb on + strand, within CCNA_02490 at 2638.549 kb on - strand, within CCNA_02490 at 2638.550 kb on - strand, within CCNA_02490 at 2638.924 kb on + strand at 2638.941 kb on + strand at 2639.028 kb on + strand at 2639.028 kb on + strand at 2639.034 kb on + strand at 2639.036 kb on - strand at 2639.036 kb on - strand at 2639.084 kb on - strand, within CCNA_02491 at 2639.088 kb on - strand, within CCNA_02491 at 2639.088 kb on - strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.232 kb on + strand, within CCNA_02491 at 2639.232 kb on + strand, within CCNA_02491 at 2639.234 kb on + strand, within CCNA_02491 at 2639.242 kb on - strand, within CCNA_02491 at 2639.269 kb on - strand, within CCNA_02491 at 2639.269 kb on - strand, within CCNA_02491 at 2639.295 kb on + strand, within CCNA_02491 at 2639.362 kb on - strand, within CCNA_02491 at 2639.393 kb on + strand, within CCNA_02491 at 2639.465 kb on - strand, within CCNA_02491 at 2639.484 kb on + strand, within CCNA_02491 at 2639.492 kb on - strand, within CCNA_02491 at 2639.492 kb on - strand, within CCNA_02491 at 2639.562 kb on + strand, within CCNA_02491 at 2639.562 kb on + strand, within CCNA_02491 at 2639.597 kb on + strand, within CCNA_02491 at 2639.600 kb on + strand, within CCNA_02491 at 2639.605 kb on - strand, within CCNA_02491 at 2639.605 kb on - strand, within CCNA_02491 at 2639.608 kb on - strand, within CCNA_02491 at 2639.612 kb on + strand at 2639.612 kb on + strand at 2639.634 kb on - strand at 2639.639 kb on - strand at 2639.641 kb on + strand at 2639.645 kb on + strand at 2639.653 kb on - strand at 2639.668 kb on + strand at 2639.698 kb on - strand at 2639.725 kb on - strand at 2639.761 kb on + strand, within CCNA_02492 at 2639.776 kb on - strand, within CCNA_02492 at 2639.786 kb on - strand, within CCNA_02492 at 2639.786 kb on - strand, within CCNA_02492 at 2639.795 kb on - strand, within CCNA_02492 at 2639.800 kb on - strand, within CCNA_02492 at 2639.800 kb on - strand, within CCNA_02492 at 2639.800 kb on - strand, within CCNA_02492 at 2639.836 kb on - strand, within CCNA_02492 at 2639.838 kb on + strand, within CCNA_02492 at 2639.838 kb on + strand, within CCNA_02492 at 2639.846 kb on - strand, within CCNA_02492 at 2639.846 kb on - strand, within CCNA_02492 at 2639.853 kb on - strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.865 kb on - strand, within CCNA_02492 at 2639.865 kb on - strand, within CCNA_02492 at 2639.888 kb on - strand, within CCNA_02492 at 2639.888 kb on - strand, within CCNA_02492 at 2639.920 kb on + strand, within CCNA_02492 at 2639.928 kb on - strand, within CCNA_02492 at 2639.930 kb on - strand, within CCNA_02492 at 2639.940 kb on + strand, within CCNA_02492 at 2640.002 kb on + strand, within CCNA_02492 at 2640.010 kb on - strand, within CCNA_02492 at 2640.010 kb on - strand, within CCNA_02492 at 2640.010 kb on - strand, within CCNA_02492 at 2640.010 kb on - strand, within CCNA_02492 at 2640.010 kb on - strand, within CCNA_02492 at 2640.025 kb on + strand, within CCNA_02492 at 2640.025 kb on + strand, within CCNA_02492 at 2640.165 kb on + strand, within CCNA_02492 at 2640.173 kb on - strand, within CCNA_02492 at 2640.224 kb on - strand, within CCNA_02492 at 2640.233 kb on + strand, within CCNA_02492 at 2640.241 kb on - strand, within CCNA_02492 at 2640.241 kb on - strand, within CCNA_02492 at 2640.267 kb on - strand at 2640.273 kb on - strand at 2640.318 kb on + strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.349 kb on - strand at 2640.404 kb on + strand at 2640.410 kb on + strand at 2640.410 kb on + strand at 2640.425 kb on + strand at 2640.425 kb on + strand at 2640.425 kb on + strand at 2640.425 kb on + strand at 2640.433 kb on - strand at 2640.433 kb on - strand at 2640.433 kb on - strand at 2640.451 kb on - strand at 2640.491 kb on + strand, within CCNA_02493 at 2640.521 kb on - strand, within CCNA_02493 at 2640.530 kb on + strand, within CCNA_02493 at 2640.538 kb on - strand, within CCNA_02493 at 2640.559 kb on + strand, within CCNA_02493 at 2640.562 kb on - strand, within CCNA_02493 at 2640.632 kb on + strand, within CCNA_02493 at 2640.632 kb on + strand, within CCNA_02493 at 2640.651 kb on + strand, within CCNA_02493 at 2640.651 kb on + strand, within CCNA_02493 at 2640.651 kb on + strand, within CCNA_02493 at 2640.659 kb on - strand, within CCNA_02493 at 2640.680 kb on - strand, within CCNA_02493
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,638,283 + CCNA_02490 0.43 -0.7 2,638,302 + CCNA_02490 0.45 -0.1 2,638,312 + CCNA_02490 0.46 -1.0 2,638,516 + CCNA_02490 0.63 -0.8 2,638,524 + CCNA_02490 0.63 +0.8 2,638,547 + CCNA_02490 0.65 -0.4 2,638,549 - CCNA_02490 0.65 -0.9 2,638,550 - CCNA_02490 0.65 -1.0 2,638,924 + -0.4 2,638,941 + +1.8 2,639,028 + +0.1 2,639,028 + +0.2 2,639,034 + +0.8 2,639,036 - +1.1 2,639,036 - +0.4 2,639,084 - CCNA_02491 0.16 +1.5 2,639,088 - CCNA_02491 0.16 +0.1 2,639,088 - CCNA_02491 0.16 -0.5 2,639,162 + CCNA_02491 0.27 +1.9 2,639,162 + CCNA_02491 0.27 -1.3 2,639,162 + CCNA_02491 0.27 -1.3 2,639,162 + CCNA_02491 0.27 -1.7 2,639,162 + CCNA_02491 0.27 +0.7 2,639,162 + CCNA_02491 0.27 -0.5 2,639,162 + CCNA_02491 0.27 -0.8 2,639,162 + CCNA_02491 0.27 -0.7 2,639,162 + CCNA_02491 0.27 +1.5 2,639,170 - CCNA_02491 0.28 -2.2 2,639,232 + CCNA_02491 0.36 -0.1 2,639,232 + CCNA_02491 0.36 -0.7 2,639,234 + CCNA_02491 0.37 +0.2 2,639,242 - CCNA_02491 0.38 -1.2 2,639,269 - CCNA_02491 0.42 +0.2 2,639,269 - CCNA_02491 0.42 -0.2 2,639,295 + CCNA_02491 0.45 -0.3 2,639,362 - CCNA_02491 0.55 -0.7 2,639,393 + CCNA_02491 0.59 -1.9 2,639,465 - CCNA_02491 0.69 +1.7 2,639,484 + CCNA_02491 0.72 -1.2 2,639,492 - CCNA_02491 0.73 -2.2 2,639,492 - CCNA_02491 0.73 -0.4 2,639,562 + CCNA_02491 0.83 -2.4 2,639,562 + CCNA_02491 0.83 -0.3 2,639,597 + CCNA_02491 0.88 -1.3 2,639,600 + CCNA_02491 0.88 -2.1 2,639,605 - CCNA_02491 0.89 +1.5 2,639,605 - CCNA_02491 0.89 -1.8 2,639,608 - CCNA_02491 0.90 -1.7 2,639,612 + +1.5 2,639,612 + +0.1 2,639,634 - -2.0 2,639,639 - -0.9 2,639,641 + +0.6 2,639,645 + +0.5 2,639,653 - -2.3 2,639,668 + +2.5 2,639,698 - -1.1 2,639,725 - -0.5 2,639,761 + CCNA_02492 0.13 -0.9 2,639,776 - CCNA_02492 0.16 +1.6 2,639,786 - CCNA_02492 0.17 +1.5 2,639,786 - CCNA_02492 0.17 -0.2 2,639,795 - CCNA_02492 0.19 +1.4 2,639,800 - CCNA_02492 0.19 -1.6 2,639,800 - CCNA_02492 0.19 +0.7 2,639,800 - CCNA_02492 0.19 +0.2 2,639,836 - CCNA_02492 0.25 +1.5 2,639,838 + CCNA_02492 0.25 +1.3 2,639,838 + CCNA_02492 0.25 +0.2 2,639,846 - CCNA_02492 0.26 +0.3 2,639,846 - CCNA_02492 0.26 +1.5 2,639,853 - CCNA_02492 0.27 +0.2 2,639,857 + CCNA_02492 0.28 +1.2 2,639,857 + CCNA_02492 0.28 +0.1 2,639,857 + CCNA_02492 0.28 -1.7 2,639,857 + CCNA_02492 0.28 -1.9 2,639,857 + CCNA_02492 0.28 +1.1 2,639,857 + CCNA_02492 0.28 -0.8 2,639,857 + CCNA_02492 0.28 +0.3 2,639,865 - CCNA_02492 0.29 -0.2 2,639,865 - CCNA_02492 0.29 -0.6 2,639,888 - CCNA_02492 0.33 -1.2 2,639,888 - CCNA_02492 0.33 +0.5 2,639,920 + CCNA_02492 0.38 +0.2 2,639,928 - CCNA_02492 0.39 +0.4 2,639,930 - CCNA_02492 0.39 +1.2 2,639,940 + CCNA_02492 0.41 +1.2 2,640,002 + CCNA_02492 0.50 +0.2 2,640,010 - CCNA_02492 0.52 +1.5 2,640,010 - CCNA_02492 0.52 -2.5 2,640,010 - CCNA_02492 0.52 -1.1 2,640,010 - CCNA_02492 0.52 -0.7 2,640,010 - CCNA_02492 0.52 -0.2 2,640,025 + CCNA_02492 0.54 -1.2 2,640,025 + CCNA_02492 0.54 +0.1 2,640,165 + CCNA_02492 0.75 -0.6 2,640,173 - CCNA_02492 0.77 -0.2 2,640,224 - CCNA_02492 0.84 -0.4 2,640,233 + CCNA_02492 0.86 +1.5 2,640,241 - CCNA_02492 0.87 -0.7 2,640,241 - CCNA_02492 0.87 +0.6 2,640,267 - -0.4 2,640,273 - -1.1 2,640,318 + +0.1 2,640,349 - -1.6 2,640,349 - -1.3 2,640,349 - -0.4 2,640,349 - +1.9 2,640,349 - -0.8 2,640,349 - -0.5 2,640,349 - -0.2 2,640,404 + -1.8 2,640,410 + -0.9 2,640,410 + -1.7 2,640,425 + -0.2 2,640,425 + -0.9 2,640,425 + -0.9 2,640,425 + +1.6 2,640,433 - +0.5 2,640,433 - -1.5 2,640,433 - +1.9 2,640,451 - +0.1 2,640,491 + CCNA_02493 0.13 -1.3 2,640,521 - CCNA_02493 0.15 -0.2 2,640,530 + CCNA_02493 0.16 +0.5 2,640,538 - CCNA_02493 0.17 +1.8 2,640,559 + CCNA_02493 0.19 +0.9 2,640,562 - CCNA_02493 0.19 -2.2 2,640,632 + CCNA_02493 0.25 +1.5 2,640,632 + CCNA_02493 0.25 -0.4 2,640,651 + CCNA_02493 0.27 -1.6 2,640,651 + CCNA_02493 0.27 -0.5 2,640,651 + CCNA_02493 0.27 +0.8 2,640,659 - CCNA_02493 0.27 -1.6 2,640,680 - CCNA_02493 0.29 -0.2
Or see this region's nucleotide sequence