Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02491

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02490 and CCNA_02491 are separated by 9 nucleotidesCCNA_02491 and CCNA_02492 overlap by 8 nucleotidesCCNA_02492 and CCNA_02493 are separated by 19 nucleotides CCNA_02490: CCNA_02490 - 3-ketoacyl-CoA thiolase, at 2,637,765 to 2,638,964 _02490 CCNA_02491: CCNA_02491 - protocatechuate 3,4-dioxygenase beta chain, at 2,638,974 to 2,639,681 _02491 CCNA_02492: CCNA_02492 - protocatechuate 3,4-dioxygenase alpha chain, at 2,639,674 to 2,640,324 _02492 CCNA_02493: CCNA_02493 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,640,344 to 2,641,492 _02493 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -2 -1 0 1 2at 2638.283 kb on + strand, within CCNA_02490at 2638.302 kb on + strand, within CCNA_02490at 2638.312 kb on + strand, within CCNA_02490at 2638.516 kb on + strand, within CCNA_02490at 2638.524 kb on + strand, within CCNA_02490at 2638.547 kb on + strand, within CCNA_02490at 2638.549 kb on - strand, within CCNA_02490at 2638.550 kb on - strand, within CCNA_02490at 2638.924 kb on + strandat 2638.941 kb on + strandat 2639.028 kb on + strandat 2639.028 kb on + strandat 2639.034 kb on + strandat 2639.036 kb on - strandat 2639.036 kb on - strandat 2639.084 kb on - strand, within CCNA_02491at 2639.088 kb on - strand, within CCNA_02491at 2639.088 kb on - strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.232 kb on + strand, within CCNA_02491at 2639.232 kb on + strand, within CCNA_02491at 2639.234 kb on + strand, within CCNA_02491at 2639.242 kb on - strand, within CCNA_02491at 2639.269 kb on - strand, within CCNA_02491at 2639.269 kb on - strand, within CCNA_02491at 2639.295 kb on + strand, within CCNA_02491at 2639.362 kb on - strand, within CCNA_02491at 2639.393 kb on + strand, within CCNA_02491at 2639.465 kb on - strand, within CCNA_02491at 2639.484 kb on + strand, within CCNA_02491at 2639.492 kb on - strand, within CCNA_02491at 2639.492 kb on - strand, within CCNA_02491at 2639.562 kb on + strand, within CCNA_02491at 2639.562 kb on + strand, within CCNA_02491at 2639.597 kb on + strand, within CCNA_02491at 2639.600 kb on + strand, within CCNA_02491at 2639.605 kb on - strand, within CCNA_02491at 2639.605 kb on - strand, within CCNA_02491at 2639.608 kb on - strand, within CCNA_02491at 2639.612 kb on + strandat 2639.612 kb on + strandat 2639.634 kb on - strandat 2639.639 kb on - strandat 2639.641 kb on + strandat 2639.645 kb on + strandat 2639.653 kb on - strandat 2639.668 kb on + strandat 2639.698 kb on - strandat 2639.725 kb on - strandat 2639.761 kb on + strand, within CCNA_02492at 2639.776 kb on - strand, within CCNA_02492at 2639.786 kb on - strand, within CCNA_02492at 2639.786 kb on - strand, within CCNA_02492at 2639.795 kb on - strand, within CCNA_02492at 2639.800 kb on - strand, within CCNA_02492at 2639.800 kb on - strand, within CCNA_02492at 2639.800 kb on - strand, within CCNA_02492at 2639.836 kb on - strand, within CCNA_02492at 2639.838 kb on + strand, within CCNA_02492at 2639.838 kb on + strand, within CCNA_02492at 2639.846 kb on - strand, within CCNA_02492at 2639.846 kb on - strand, within CCNA_02492at 2639.853 kb on - strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.865 kb on - strand, within CCNA_02492at 2639.865 kb on - strand, within CCNA_02492at 2639.888 kb on - strand, within CCNA_02492at 2639.888 kb on - strand, within CCNA_02492at 2639.920 kb on + strand, within CCNA_02492at 2639.928 kb on - strand, within CCNA_02492at 2639.930 kb on - strand, within CCNA_02492at 2639.940 kb on + strand, within CCNA_02492at 2640.002 kb on + strand, within CCNA_02492at 2640.010 kb on - strand, within CCNA_02492at 2640.010 kb on - strand, within CCNA_02492at 2640.010 kb on - strand, within CCNA_02492at 2640.010 kb on - strand, within CCNA_02492at 2640.010 kb on - strand, within CCNA_02492at 2640.025 kb on + strand, within CCNA_02492at 2640.025 kb on + strand, within CCNA_02492at 2640.165 kb on + strand, within CCNA_02492at 2640.173 kb on - strand, within CCNA_02492at 2640.224 kb on - strand, within CCNA_02492at 2640.233 kb on + strand, within CCNA_02492at 2640.241 kb on - strand, within CCNA_02492at 2640.241 kb on - strand, within CCNA_02492at 2640.267 kb on - strandat 2640.273 kb on - strandat 2640.318 kb on + strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.349 kb on - strandat 2640.404 kb on + strandat 2640.410 kb on + strandat 2640.410 kb on + strandat 2640.425 kb on + strandat 2640.425 kb on + strandat 2640.425 kb on + strandat 2640.425 kb on + strandat 2640.433 kb on - strandat 2640.433 kb on - strandat 2640.433 kb on - strandat 2640.451 kb on - strandat 2640.491 kb on + strand, within CCNA_02493at 2640.521 kb on - strand, within CCNA_02493at 2640.530 kb on + strand, within CCNA_02493at 2640.538 kb on - strand, within CCNA_02493at 2640.559 kb on + strand, within CCNA_02493at 2640.562 kb on - strand, within CCNA_02493at 2640.632 kb on + strand, within CCNA_02493at 2640.632 kb on + strand, within CCNA_02493at 2640.651 kb on + strand, within CCNA_02493at 2640.651 kb on + strand, within CCNA_02493at 2640.651 kb on + strand, within CCNA_02493at 2640.659 kb on - strand, within CCNA_02493at 2640.680 kb on - strand, within CCNA_02493

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,638,283 + CCNA_02490 0.43 -0.7
2,638,302 + CCNA_02490 0.45 -0.1
2,638,312 + CCNA_02490 0.46 -1.0
2,638,516 + CCNA_02490 0.63 -0.8
2,638,524 + CCNA_02490 0.63 +0.8
2,638,547 + CCNA_02490 0.65 -0.4
2,638,549 - CCNA_02490 0.65 -0.9
2,638,550 - CCNA_02490 0.65 -1.0
2,638,924 + -0.4
2,638,941 + +1.8
2,639,028 + +0.1
2,639,028 + +0.2
2,639,034 + +0.8
2,639,036 - +1.1
2,639,036 - +0.4
2,639,084 - CCNA_02491 0.16 +1.5
2,639,088 - CCNA_02491 0.16 +0.1
2,639,088 - CCNA_02491 0.16 -0.5
2,639,162 + CCNA_02491 0.27 +1.9
2,639,162 + CCNA_02491 0.27 -1.3
2,639,162 + CCNA_02491 0.27 -1.3
2,639,162 + CCNA_02491 0.27 -1.7
2,639,162 + CCNA_02491 0.27 +0.7
2,639,162 + CCNA_02491 0.27 -0.5
2,639,162 + CCNA_02491 0.27 -0.8
2,639,162 + CCNA_02491 0.27 -0.7
2,639,162 + CCNA_02491 0.27 +1.5
2,639,170 - CCNA_02491 0.28 -2.2
2,639,232 + CCNA_02491 0.36 -0.1
2,639,232 + CCNA_02491 0.36 -0.7
2,639,234 + CCNA_02491 0.37 +0.2
2,639,242 - CCNA_02491 0.38 -1.2
2,639,269 - CCNA_02491 0.42 +0.2
2,639,269 - CCNA_02491 0.42 -0.2
2,639,295 + CCNA_02491 0.45 -0.3
2,639,362 - CCNA_02491 0.55 -0.7
2,639,393 + CCNA_02491 0.59 -1.9
2,639,465 - CCNA_02491 0.69 +1.7
2,639,484 + CCNA_02491 0.72 -1.2
2,639,492 - CCNA_02491 0.73 -2.2
2,639,492 - CCNA_02491 0.73 -0.4
2,639,562 + CCNA_02491 0.83 -2.4
2,639,562 + CCNA_02491 0.83 -0.3
2,639,597 + CCNA_02491 0.88 -1.3
2,639,600 + CCNA_02491 0.88 -2.1
2,639,605 - CCNA_02491 0.89 +1.5
2,639,605 - CCNA_02491 0.89 -1.8
2,639,608 - CCNA_02491 0.90 -1.7
2,639,612 + +1.5
2,639,612 + +0.1
2,639,634 - -2.0
2,639,639 - -0.9
2,639,641 + +0.6
2,639,645 + +0.5
2,639,653 - -2.3
2,639,668 + +2.5
2,639,698 - -1.1
2,639,725 - -0.5
2,639,761 + CCNA_02492 0.13 -0.9
2,639,776 - CCNA_02492 0.16 +1.6
2,639,786 - CCNA_02492 0.17 +1.5
2,639,786 - CCNA_02492 0.17 -0.2
2,639,795 - CCNA_02492 0.19 +1.4
2,639,800 - CCNA_02492 0.19 -1.6
2,639,800 - CCNA_02492 0.19 +0.7
2,639,800 - CCNA_02492 0.19 +0.2
2,639,836 - CCNA_02492 0.25 +1.5
2,639,838 + CCNA_02492 0.25 +1.3
2,639,838 + CCNA_02492 0.25 +0.2
2,639,846 - CCNA_02492 0.26 +0.3
2,639,846 - CCNA_02492 0.26 +1.5
2,639,853 - CCNA_02492 0.27 +0.2
2,639,857 + CCNA_02492 0.28 +1.2
2,639,857 + CCNA_02492 0.28 +0.1
2,639,857 + CCNA_02492 0.28 -1.7
2,639,857 + CCNA_02492 0.28 -1.9
2,639,857 + CCNA_02492 0.28 +1.1
2,639,857 + CCNA_02492 0.28 -0.8
2,639,857 + CCNA_02492 0.28 +0.3
2,639,865 - CCNA_02492 0.29 -0.2
2,639,865 - CCNA_02492 0.29 -0.6
2,639,888 - CCNA_02492 0.33 -1.2
2,639,888 - CCNA_02492 0.33 +0.5
2,639,920 + CCNA_02492 0.38 +0.2
2,639,928 - CCNA_02492 0.39 +0.4
2,639,930 - CCNA_02492 0.39 +1.2
2,639,940 + CCNA_02492 0.41 +1.2
2,640,002 + CCNA_02492 0.50 +0.2
2,640,010 - CCNA_02492 0.52 +1.5
2,640,010 - CCNA_02492 0.52 -2.5
2,640,010 - CCNA_02492 0.52 -1.1
2,640,010 - CCNA_02492 0.52 -0.7
2,640,010 - CCNA_02492 0.52 -0.2
2,640,025 + CCNA_02492 0.54 -1.2
2,640,025 + CCNA_02492 0.54 +0.1
2,640,165 + CCNA_02492 0.75 -0.6
2,640,173 - CCNA_02492 0.77 -0.2
2,640,224 - CCNA_02492 0.84 -0.4
2,640,233 + CCNA_02492 0.86 +1.5
2,640,241 - CCNA_02492 0.87 -0.7
2,640,241 - CCNA_02492 0.87 +0.6
2,640,267 - -0.4
2,640,273 - -1.1
2,640,318 + +0.1
2,640,349 - -1.6
2,640,349 - -1.3
2,640,349 - -0.4
2,640,349 - +1.9
2,640,349 - -0.8
2,640,349 - -0.5
2,640,349 - -0.2
2,640,404 + -1.8
2,640,410 + -0.9
2,640,410 + -1.7
2,640,425 + -0.2
2,640,425 + -0.9
2,640,425 + -0.9
2,640,425 + +1.6
2,640,433 - +0.5
2,640,433 - -1.5
2,640,433 - +1.9
2,640,451 - +0.1
2,640,491 + CCNA_02493 0.13 -1.3
2,640,521 - CCNA_02493 0.15 -0.2
2,640,530 + CCNA_02493 0.16 +0.5
2,640,538 - CCNA_02493 0.17 +1.8
2,640,559 + CCNA_02493 0.19 +0.9
2,640,562 - CCNA_02493 0.19 -2.2
2,640,632 + CCNA_02493 0.25 +1.5
2,640,632 + CCNA_02493 0.25 -0.4
2,640,651 + CCNA_02493 0.27 -1.6
2,640,651 + CCNA_02493 0.27 -0.5
2,640,651 + CCNA_02493 0.27 +0.8
2,640,659 - CCNA_02493 0.27 -1.6
2,640,680 - CCNA_02493 0.29 -0.2

Or see this region's nucleotide sequence