Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02477

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02476 and CCNA_02477 overlap by 4 nucleotidesCCNA_02477 and CCNA_02478 are separated by 48 nucleotidesCCNA_02478 and CCNA_02479 are separated by 25 nucleotides CCNA_02476: CCNA_02476 - vanillate demethylase oxygenase subunit A vanA, at 2,620,910 to 2,621,986 _02476 CCNA_02477: CCNA_02477 - vanillate demethylase oxidoreductase subunit vanB, at 2,621,983 to 2,622,933 _02477 CCNA_02478: CCNA_02478 - dihydrolipoamide acetyltransferase component of acetoin cleaving system, at 2,622,982 to 2,623,884 _02478 CCNA_02479: CCNA_02479 - aryl-alcohol dehydrogenase, at 2,623,910 to 2,625,010 _02479 Position (kb) 2621 2622 2623Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2621.005 kb on - strandat 2621.005 kb on - strandat 2621.023 kb on + strand, within CCNA_02476at 2621.031 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.101 kb on + strand, within CCNA_02476at 2621.101 kb on + strand, within CCNA_02476at 2621.108 kb on + strand, within CCNA_02476at 2621.110 kb on - strand, within CCNA_02476at 2621.116 kb on - strand, within CCNA_02476at 2621.153 kb on + strand, within CCNA_02476at 2621.153 kb on + strand, within CCNA_02476at 2621.161 kb on - strand, within CCNA_02476at 2621.168 kb on + strand, within CCNA_02476at 2621.198 kb on + strand, within CCNA_02476at 2621.246 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.330 kb on - strand, within CCNA_02476at 2621.354 kb on - strand, within CCNA_02476at 2621.396 kb on + strand, within CCNA_02476at 2621.396 kb on + strand, within CCNA_02476at 2621.430 kb on + strand, within CCNA_02476at 2621.438 kb on - strand, within CCNA_02476at 2621.440 kb on + strand, within CCNA_02476at 2621.443 kb on - strand, within CCNA_02476at 2621.551 kb on - strand, within CCNA_02476at 2621.553 kb on + strand, within CCNA_02476at 2621.620 kb on + strand, within CCNA_02476at 2621.637 kb on + strand, within CCNA_02476at 2621.644 kb on - strand, within CCNA_02476at 2621.644 kb on - strand, within CCNA_02476at 2621.701 kb on + strand, within CCNA_02476at 2621.737 kb on + strand, within CCNA_02476at 2621.743 kb on + strand, within CCNA_02476at 2621.751 kb on - strand, within CCNA_02476at 2621.763 kb on + strand, within CCNA_02476at 2621.764 kb on - strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.796 kb on - strand, within CCNA_02476at 2621.796 kb on - strand, within CCNA_02476at 2621.804 kb on - strand, within CCNA_02476at 2621.807 kb on + strand, within CCNA_02476at 2621.815 kb on - strand, within CCNA_02476at 2621.820 kb on - strand, within CCNA_02476at 2621.839 kb on - strand, within CCNA_02476at 2621.839 kb on - strand, within CCNA_02476at 2621.869 kb on + strand, within CCNA_02476at 2621.869 kb on + strand, within CCNA_02476at 2621.872 kb on - strand, within CCNA_02476at 2621.877 kb on - strand, within CCNA_02476at 2621.877 kb on - strand, within CCNA_02476at 2621.880 kb on + strandat 2621.882 kb on - strandat 2621.927 kb on + strandat 2621.933 kb on + strandat 2621.938 kb on + strandat 2621.941 kb on - strandat 2621.958 kb on + strandat 2621.990 kb on + strandat 2621.991 kb on + strandat 2621.998 kb on - strandat 2622.014 kb on + strandat 2622.032 kb on - strandat 2622.034 kb on - strandat 2622.083 kb on - strand, within CCNA_02477at 2622.126 kb on + strand, within CCNA_02477at 2622.126 kb on + strand, within CCNA_02477at 2622.162 kb on - strand, within CCNA_02477at 2622.173 kb on + strand, within CCNA_02477at 2622.188 kb on + strand, within CCNA_02477at 2622.239 kb on - strand, within CCNA_02477at 2622.247 kb on + strand, within CCNA_02477at 2622.251 kb on + strand, within CCNA_02477at 2622.259 kb on - strand, within CCNA_02477at 2622.277 kb on + strand, within CCNA_02477at 2622.289 kb on + strand, within CCNA_02477at 2622.290 kb on - strand, within CCNA_02477at 2622.306 kb on - strand, within CCNA_02477at 2622.320 kb on + strand, within CCNA_02477at 2622.355 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.519 kb on - strand, within CCNA_02477at 2622.524 kb on - strand, within CCNA_02477at 2622.530 kb on - strand, within CCNA_02477at 2622.600 kb on + strand, within CCNA_02477at 2622.613 kb on + strand, within CCNA_02477at 2622.641 kb on - strand, within CCNA_02477at 2622.651 kb on - strand, within CCNA_02477at 2622.692 kb on + strand, within CCNA_02477at 2622.702 kb on + strand, within CCNA_02477at 2622.710 kb on - strand, within CCNA_02477at 2622.729 kb on - strand, within CCNA_02477at 2622.739 kb on + strand, within CCNA_02477at 2622.740 kb on + strand, within CCNA_02477at 2622.747 kb on - strand, within CCNA_02477at 2622.781 kb on - strand, within CCNA_02477at 2622.786 kb on + strand, within CCNA_02477at 2622.799 kb on + strand, within CCNA_02477at 2622.799 kb on + strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.834 kb on + strand, within CCNA_02477at 2622.843 kb on + strandat 2622.851 kb on - strandat 2622.888 kb on - strandat 2622.916 kb on - strandat 2622.973 kb on - strandat 2622.975 kb on - strandat 2622.985 kb on - strandat 2623.030 kb on - strandat 2623.065 kb on + strandat 2623.082 kb on + strand, within CCNA_02478at 2623.096 kb on - strand, within CCNA_02478at 2623.126 kb on - strand, within CCNA_02478at 2623.156 kb on - strand, within CCNA_02478at 2623.171 kb on + strand, within CCNA_02478at 2623.184 kb on - strand, within CCNA_02478at 2623.193 kb on + strand, within CCNA_02478at 2623.195 kb on + strand, within CCNA_02478at 2623.203 kb on - strand, within CCNA_02478at 2623.203 kb on - strand, within CCNA_02478at 2623.210 kb on + strand, within CCNA_02478at 2623.261 kb on - strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.276 kb on + strand, within CCNA_02478at 2623.284 kb on - strand, within CCNA_02478at 2623.284 kb on - strand, within CCNA_02478at 2623.294 kb on - strand, within CCNA_02478at 2623.306 kb on + strand, within CCNA_02478at 2623.348 kb on + strand, within CCNA_02478at 2623.357 kb on - strand, within CCNA_02478at 2623.359 kb on + strand, within CCNA_02478at 2623.379 kb on + strand, within CCNA_02478at 2623.452 kb on + strand, within CCNA_02478at 2623.460 kb on - strand, within CCNA_02478at 2623.467 kb on + strand, within CCNA_02478at 2623.477 kb on + strand, within CCNA_02478at 2623.483 kb on + strand, within CCNA_02478at 2623.485 kb on - strand, within CCNA_02478at 2623.491 kb on - strand, within CCNA_02478at 2623.501 kb on + strand, within CCNA_02478at 2623.535 kb on - strand, within CCNA_02478at 2623.568 kb on - strand, within CCNA_02478at 2623.585 kb on + strand, within CCNA_02478at 2623.616 kb on - strand, within CCNA_02478at 2623.644 kb on - strand, within CCNA_02478at 2623.683 kb on + strand, within CCNA_02478at 2623.718 kb on + strand, within CCNA_02478at 2623.718 kb on + strand, within CCNA_02478at 2623.734 kb on - strand, within CCNA_02478at 2623.742 kb on + strand, within CCNA_02478at 2623.768 kb on + strand, within CCNA_02478at 2623.773 kb on + strand, within CCNA_02478at 2623.811 kb on - strandat 2623.831 kb on + strandat 2623.837 kb on - strandat 2623.842 kb on + strandat 2623.861 kb on + strandat 2623.861 kb on + strandat 2623.869 kb on - strandat 2623.881 kb on - strandat 2623.881 kb on - strandat 2623.881 kb on - strandat 2623.932 kb on - strandat 2623.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,620,997 + -0.9
2,620,997 + +0.5
2,620,997 + +0.9
2,620,997 + -0.7
2,620,997 + +0.5
2,620,997 + -1.1
2,620,997 + -0.8
2,621,005 - +1.2
2,621,005 - +0.1
2,621,023 + CCNA_02476 0.10 -0.1
2,621,031 - CCNA_02476 0.11 +0.4
2,621,082 - CCNA_02476 0.16 +1.9
2,621,082 - CCNA_02476 0.16 -0.9
2,621,082 - CCNA_02476 0.16 +1.9
2,621,101 + CCNA_02476 0.18 -1.6
2,621,101 + CCNA_02476 0.18 +1.5
2,621,108 + CCNA_02476 0.18 +0.3
2,621,110 - CCNA_02476 0.19 -2.0
2,621,116 - CCNA_02476 0.19 +0.2
2,621,153 + CCNA_02476 0.23 +0.7
2,621,153 + CCNA_02476 0.23 -0.4
2,621,161 - CCNA_02476 0.23 -2.1
2,621,168 + CCNA_02476 0.24 -0.3
2,621,198 + CCNA_02476 0.27 -1.2
2,621,246 + CCNA_02476 0.31 -2.2
2,621,308 + CCNA_02476 0.37 -0.9
2,621,308 + CCNA_02476 0.37 +0.9
2,621,308 + CCNA_02476 0.37 +0.1
2,621,316 - CCNA_02476 0.38 -0.5
2,621,316 - CCNA_02476 0.38 -0.9
2,621,316 - CCNA_02476 0.38 +1.6
2,621,330 - CCNA_02476 0.39 +1.3
2,621,354 - CCNA_02476 0.41 -0.1
2,621,396 + CCNA_02476 0.45 +0.8
2,621,396 + CCNA_02476 0.45 -1.3
2,621,430 + CCNA_02476 0.48 -2.3
2,621,438 - CCNA_02476 0.49 +0.9
2,621,440 + CCNA_02476 0.49 -1.9
2,621,443 - CCNA_02476 0.49 -1.2
2,621,551 - CCNA_02476 0.60 -0.4
2,621,553 + CCNA_02476 0.60 -0.4
2,621,620 + CCNA_02476 0.66 +0.5
2,621,637 + CCNA_02476 0.68 -1.4
2,621,644 - CCNA_02476 0.68 +0.3
2,621,644 - CCNA_02476 0.68 +0.3
2,621,701 + CCNA_02476 0.73 +1.5
2,621,737 + CCNA_02476 0.77 -0.8
2,621,743 + CCNA_02476 0.77 -0.8
2,621,751 - CCNA_02476 0.78 -0.8
2,621,763 + CCNA_02476 0.79 -0.5
2,621,764 - CCNA_02476 0.79 -0.6
2,621,788 + CCNA_02476 0.82 -1.2
2,621,788 + CCNA_02476 0.82 +0.9
2,621,788 + CCNA_02476 0.82 -0.6
2,621,788 + CCNA_02476 0.82 -0.1
2,621,796 - CCNA_02476 0.82 -0.8
2,621,796 - CCNA_02476 0.82 +0.2
2,621,804 - CCNA_02476 0.83 -0.6
2,621,807 + CCNA_02476 0.83 -1.4
2,621,815 - CCNA_02476 0.84 -0.6
2,621,820 - CCNA_02476 0.84 -0.5
2,621,839 - CCNA_02476 0.86 -1.1
2,621,839 - CCNA_02476 0.86 -0.9
2,621,869 + CCNA_02476 0.89 -1.6
2,621,869 + CCNA_02476 0.89 +0.3
2,621,872 - CCNA_02476 0.89 -0.7
2,621,877 - CCNA_02476 0.90 +1.2
2,621,877 - CCNA_02476 0.90 +0.3
2,621,880 + -0.3
2,621,882 - +2.1
2,621,927 + -1.9
2,621,933 + -0.1
2,621,938 + +0.1
2,621,941 - +0.2
2,621,958 + -1.7
2,621,990 + -0.8
2,621,991 + -0.6
2,621,998 - -1.2
2,622,014 + +0.5
2,622,032 - -1.0
2,622,034 - -1.4
2,622,083 - CCNA_02477 0.11 -1.5
2,622,126 + CCNA_02477 0.15 -0.7
2,622,126 + CCNA_02477 0.15 -1.0
2,622,162 - CCNA_02477 0.19 -0.1
2,622,173 + CCNA_02477 0.20 +0.6
2,622,188 + CCNA_02477 0.22 -2.2
2,622,239 - CCNA_02477 0.27 -2.2
2,622,247 + CCNA_02477 0.28 +0.7
2,622,251 + CCNA_02477 0.28 -1.4
2,622,259 - CCNA_02477 0.29 -1.4
2,622,277 + CCNA_02477 0.31 +0.7
2,622,289 + CCNA_02477 0.32 -1.9
2,622,290 - CCNA_02477 0.32 -1.2
2,622,306 - CCNA_02477 0.34 -1.5
2,622,320 + CCNA_02477 0.35 -1.9
2,622,355 + CCNA_02477 0.39 +0.1
2,622,445 + CCNA_02477 0.49 +3.9
2,622,445 + CCNA_02477 0.49 -0.9
2,622,445 + CCNA_02477 0.49 -1.7
2,622,445 + CCNA_02477 0.49 +0.1
2,622,445 + CCNA_02477 0.49 -2.3
2,622,519 - CCNA_02477 0.56 -0.4
2,622,524 - CCNA_02477 0.57 +0.3
2,622,530 - CCNA_02477 0.58 +0.6
2,622,600 + CCNA_02477 0.65 +1.3
2,622,613 + CCNA_02477 0.66 +1.9
2,622,641 - CCNA_02477 0.69 -1.0
2,622,651 - CCNA_02477 0.70 -0.9
2,622,692 + CCNA_02477 0.75 -1.0
2,622,702 + CCNA_02477 0.76 -2.0
2,622,710 - CCNA_02477 0.76 +1.2
2,622,729 - CCNA_02477 0.78 +1.1
2,622,739 + CCNA_02477 0.79 +0.0
2,622,740 + CCNA_02477 0.80 -1.2
2,622,747 - CCNA_02477 0.80 +3.1
2,622,781 - CCNA_02477 0.84 -1.8
2,622,786 + CCNA_02477 0.84 -1.8
2,622,799 + CCNA_02477 0.86 -1.3
2,622,799 + CCNA_02477 0.86 -0.1
2,622,807 - CCNA_02477 0.87 -1.1
2,622,807 - CCNA_02477 0.87 -0.1
2,622,807 - CCNA_02477 0.87 -0.7
2,622,807 - CCNA_02477 0.87 -0.5
2,622,807 - CCNA_02477 0.87 -0.8
2,622,807 - CCNA_02477 0.87 -0.4
2,622,834 + CCNA_02477 0.89 +0.5
2,622,843 + +0.1
2,622,851 - +0.1
2,622,888 - -1.2
2,622,916 - -1.7
2,622,973 - -0.6
2,622,975 - -1.7
2,622,985 - -0.7
2,623,030 - -0.4
2,623,065 + +0.5
2,623,082 + CCNA_02478 0.11 -2.4
2,623,096 - CCNA_02478 0.13 -0.9
2,623,126 - CCNA_02478 0.16 -2.1
2,623,156 - CCNA_02478 0.19 +0.5
2,623,171 + CCNA_02478 0.21 -0.4
2,623,184 - CCNA_02478 0.22 -0.6
2,623,193 + CCNA_02478 0.23 -0.7
2,623,195 + CCNA_02478 0.24 +1.8
2,623,203 - CCNA_02478 0.24 -1.7
2,623,203 - CCNA_02478 0.24 -1.3
2,623,210 + CCNA_02478 0.25 -1.0
2,623,261 - CCNA_02478 0.31 -0.3
2,623,276 + CCNA_02478 0.33 +0.5
2,623,276 + CCNA_02478 0.33 -0.2
2,623,276 + CCNA_02478 0.33 -0.4
2,623,276 + CCNA_02478 0.33 -0.7
2,623,276 + CCNA_02478 0.33 +0.9
2,623,276 + CCNA_02478 0.33 +0.5
2,623,284 - CCNA_02478 0.33 +0.9
2,623,284 - CCNA_02478 0.33 -0.3
2,623,294 - CCNA_02478 0.35 -1.4
2,623,306 + CCNA_02478 0.36 -1.6
2,623,348 + CCNA_02478 0.41 +1.5
2,623,357 - CCNA_02478 0.42 +1.4
2,623,359 + CCNA_02478 0.42 +1.2
2,623,379 + CCNA_02478 0.44 -0.8
2,623,452 + CCNA_02478 0.52 -0.2
2,623,460 - CCNA_02478 0.53 +0.7
2,623,467 + CCNA_02478 0.54 +0.4
2,623,477 + CCNA_02478 0.55 +0.3
2,623,483 + CCNA_02478 0.55 -1.7
2,623,485 - CCNA_02478 0.56 -1.2
2,623,491 - CCNA_02478 0.56 +1.9
2,623,501 + CCNA_02478 0.57 -0.2
2,623,535 - CCNA_02478 0.61 -0.3
2,623,568 - CCNA_02478 0.65 +0.1
2,623,585 + CCNA_02478 0.67 -1.5
2,623,616 - CCNA_02478 0.70 -1.0
2,623,644 - CCNA_02478 0.73 -1.8
2,623,683 + CCNA_02478 0.78 -1.8
2,623,718 + CCNA_02478 0.82 -0.8
2,623,718 + CCNA_02478 0.82 -0.2
2,623,734 - CCNA_02478 0.83 +0.7
2,623,742 + CCNA_02478 0.84 -2.1
2,623,768 + CCNA_02478 0.87 -0.8
2,623,773 + CCNA_02478 0.88 -1.6
2,623,811 - -1.4
2,623,831 + -1.0
2,623,837 - +0.5
2,623,842 + +0.5
2,623,861 + +0.5
2,623,861 + +0.1
2,623,869 - +0.1
2,623,881 - -2.5
2,623,881 - +2.2
2,623,881 - -0.9
2,623,932 - +0.3
2,623,932 - +0.5

Or see this region's nucleotide sequence