Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02476 and CCNA_02477 overlap by 4 nucleotides CCNA_02477 and CCNA_02478 are separated by 48 nucleotides CCNA_02478 and CCNA_02479 are separated by 25 nucleotides
CCNA_02476: CCNA_02476 - vanillate demethylase oxygenase subunit A vanA, at 2,620,910 to 2,621,986
_02476
CCNA_02477: CCNA_02477 - vanillate demethylase oxidoreductase subunit vanB, at 2,621,983 to 2,622,933
_02477
CCNA_02478: CCNA_02478 - dihydrolipoamide acetyltransferase component of acetoin cleaving system, at 2,622,982 to 2,623,884
_02478
CCNA_02479: CCNA_02479 - aryl-alcohol dehydrogenase, at 2,623,910 to 2,625,010
_02479
Position (kb)
2621
2622
2623 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2620.997 kb on + strand at 2620.997 kb on + strand at 2620.997 kb on + strand at 2620.997 kb on + strand at 2620.997 kb on + strand at 2620.997 kb on + strand at 2620.997 kb on + strand at 2621.005 kb on - strand at 2621.005 kb on - strand at 2621.023 kb on + strand, within CCNA_02476 at 2621.031 kb on - strand, within CCNA_02476 at 2621.082 kb on - strand, within CCNA_02476 at 2621.082 kb on - strand, within CCNA_02476 at 2621.082 kb on - strand, within CCNA_02476 at 2621.101 kb on + strand, within CCNA_02476 at 2621.101 kb on + strand, within CCNA_02476 at 2621.108 kb on + strand, within CCNA_02476 at 2621.110 kb on - strand, within CCNA_02476 at 2621.116 kb on - strand, within CCNA_02476 at 2621.153 kb on + strand, within CCNA_02476 at 2621.153 kb on + strand, within CCNA_02476 at 2621.161 kb on - strand, within CCNA_02476 at 2621.168 kb on + strand, within CCNA_02476 at 2621.198 kb on + strand, within CCNA_02476 at 2621.246 kb on + strand, within CCNA_02476 at 2621.308 kb on + strand, within CCNA_02476 at 2621.308 kb on + strand, within CCNA_02476 at 2621.308 kb on + strand, within CCNA_02476 at 2621.316 kb on - strand, within CCNA_02476 at 2621.316 kb on - strand, within CCNA_02476 at 2621.316 kb on - strand, within CCNA_02476 at 2621.330 kb on - strand, within CCNA_02476 at 2621.354 kb on - strand, within CCNA_02476 at 2621.396 kb on + strand, within CCNA_02476 at 2621.396 kb on + strand, within CCNA_02476 at 2621.430 kb on + strand, within CCNA_02476 at 2621.438 kb on - strand, within CCNA_02476 at 2621.440 kb on + strand, within CCNA_02476 at 2621.443 kb on - strand, within CCNA_02476 at 2621.551 kb on - strand, within CCNA_02476 at 2621.553 kb on + strand, within CCNA_02476 at 2621.620 kb on + strand, within CCNA_02476 at 2621.637 kb on + strand, within CCNA_02476 at 2621.644 kb on - strand, within CCNA_02476 at 2621.644 kb on - strand, within CCNA_02476 at 2621.701 kb on + strand, within CCNA_02476 at 2621.737 kb on + strand, within CCNA_02476 at 2621.743 kb on + strand, within CCNA_02476 at 2621.751 kb on - strand, within CCNA_02476 at 2621.763 kb on + strand, within CCNA_02476 at 2621.764 kb on - strand, within CCNA_02476 at 2621.788 kb on + strand, within CCNA_02476 at 2621.788 kb on + strand, within CCNA_02476 at 2621.788 kb on + strand, within CCNA_02476 at 2621.788 kb on + strand, within CCNA_02476 at 2621.796 kb on - strand, within CCNA_02476 at 2621.796 kb on - strand, within CCNA_02476 at 2621.804 kb on - strand, within CCNA_02476 at 2621.807 kb on + strand, within CCNA_02476 at 2621.815 kb on - strand, within CCNA_02476 at 2621.820 kb on - strand, within CCNA_02476 at 2621.839 kb on - strand, within CCNA_02476 at 2621.839 kb on - strand, within CCNA_02476 at 2621.869 kb on + strand, within CCNA_02476 at 2621.869 kb on + strand, within CCNA_02476 at 2621.872 kb on - strand, within CCNA_02476 at 2621.877 kb on - strand, within CCNA_02476 at 2621.877 kb on - strand, within CCNA_02476 at 2621.880 kb on + strand at 2621.882 kb on - strand at 2621.927 kb on + strand at 2621.933 kb on + strand at 2621.938 kb on + strand at 2621.941 kb on - strand at 2621.958 kb on + strand at 2621.990 kb on + strand at 2621.991 kb on + strand at 2621.998 kb on - strand at 2622.014 kb on + strand at 2622.032 kb on - strand at 2622.034 kb on - strand at 2622.083 kb on - strand, within CCNA_02477 at 2622.126 kb on + strand, within CCNA_02477 at 2622.126 kb on + strand, within CCNA_02477 at 2622.162 kb on - strand, within CCNA_02477 at 2622.173 kb on + strand, within CCNA_02477 at 2622.188 kb on + strand, within CCNA_02477 at 2622.239 kb on - strand, within CCNA_02477 at 2622.247 kb on + strand, within CCNA_02477 at 2622.251 kb on + strand, within CCNA_02477 at 2622.259 kb on - strand, within CCNA_02477 at 2622.277 kb on + strand, within CCNA_02477 at 2622.289 kb on + strand, within CCNA_02477 at 2622.290 kb on - strand, within CCNA_02477 at 2622.306 kb on - strand, within CCNA_02477 at 2622.320 kb on + strand, within CCNA_02477 at 2622.355 kb on + strand, within CCNA_02477 at 2622.445 kb on + strand, within CCNA_02477 at 2622.445 kb on + strand, within CCNA_02477 at 2622.445 kb on + strand, within CCNA_02477 at 2622.445 kb on + strand, within CCNA_02477 at 2622.445 kb on + strand, within CCNA_02477 at 2622.519 kb on - strand, within CCNA_02477 at 2622.524 kb on - strand, within CCNA_02477 at 2622.530 kb on - strand, within CCNA_02477 at 2622.600 kb on + strand, within CCNA_02477 at 2622.613 kb on + strand, within CCNA_02477 at 2622.641 kb on - strand, within CCNA_02477 at 2622.651 kb on - strand, within CCNA_02477 at 2622.692 kb on + strand, within CCNA_02477 at 2622.702 kb on + strand, within CCNA_02477 at 2622.710 kb on - strand, within CCNA_02477 at 2622.729 kb on - strand, within CCNA_02477 at 2622.739 kb on + strand, within CCNA_02477 at 2622.740 kb on + strand, within CCNA_02477 at 2622.747 kb on - strand, within CCNA_02477 at 2622.781 kb on - strand, within CCNA_02477 at 2622.786 kb on + strand, within CCNA_02477 at 2622.799 kb on + strand, within CCNA_02477 at 2622.799 kb on + strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.807 kb on - strand, within CCNA_02477 at 2622.834 kb on + strand, within CCNA_02477 at 2622.843 kb on + strand at 2622.851 kb on - strand at 2622.888 kb on - strand at 2622.916 kb on - strand at 2622.973 kb on - strand at 2622.975 kb on - strand at 2622.985 kb on - strand at 2623.030 kb on - strand at 2623.065 kb on + strand at 2623.082 kb on + strand, within CCNA_02478 at 2623.096 kb on - strand, within CCNA_02478 at 2623.126 kb on - strand, within CCNA_02478 at 2623.156 kb on - strand, within CCNA_02478 at 2623.171 kb on + strand, within CCNA_02478 at 2623.184 kb on - strand, within CCNA_02478 at 2623.193 kb on + strand, within CCNA_02478 at 2623.195 kb on + strand, within CCNA_02478 at 2623.203 kb on - strand, within CCNA_02478 at 2623.203 kb on - strand, within CCNA_02478 at 2623.210 kb on + strand, within CCNA_02478 at 2623.261 kb on - strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.276 kb on + strand, within CCNA_02478 at 2623.284 kb on - strand, within CCNA_02478 at 2623.284 kb on - strand, within CCNA_02478 at 2623.294 kb on - strand, within CCNA_02478 at 2623.306 kb on + strand, within CCNA_02478 at 2623.348 kb on + strand, within CCNA_02478 at 2623.357 kb on - strand, within CCNA_02478 at 2623.359 kb on + strand, within CCNA_02478 at 2623.379 kb on + strand, within CCNA_02478 at 2623.452 kb on + strand, within CCNA_02478 at 2623.460 kb on - strand, within CCNA_02478 at 2623.467 kb on + strand, within CCNA_02478 at 2623.477 kb on + strand, within CCNA_02478 at 2623.483 kb on + strand, within CCNA_02478 at 2623.485 kb on - strand, within CCNA_02478 at 2623.491 kb on - strand, within CCNA_02478 at 2623.501 kb on + strand, within CCNA_02478 at 2623.535 kb on - strand, within CCNA_02478 at 2623.568 kb on - strand, within CCNA_02478 at 2623.585 kb on + strand, within CCNA_02478 at 2623.616 kb on - strand, within CCNA_02478 at 2623.644 kb on - strand, within CCNA_02478 at 2623.683 kb on + strand, within CCNA_02478 at 2623.718 kb on + strand, within CCNA_02478 at 2623.718 kb on + strand, within CCNA_02478 at 2623.734 kb on - strand, within CCNA_02478 at 2623.742 kb on + strand, within CCNA_02478 at 2623.768 kb on + strand, within CCNA_02478 at 2623.773 kb on + strand, within CCNA_02478 at 2623.811 kb on - strand at 2623.831 kb on + strand at 2623.837 kb on - strand at 2623.842 kb on + strand at 2623.861 kb on + strand at 2623.861 kb on + strand at 2623.869 kb on - strand at 2623.881 kb on - strand at 2623.881 kb on - strand at 2623.881 kb on - strand at 2623.932 kb on - strand at 2623.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,620,997 + -0.9 2,620,997 + +0.5 2,620,997 + +0.9 2,620,997 + -0.7 2,620,997 + +0.5 2,620,997 + -1.1 2,620,997 + -0.8 2,621,005 - +1.2 2,621,005 - +0.1 2,621,023 + CCNA_02476 0.10 -0.1 2,621,031 - CCNA_02476 0.11 +0.4 2,621,082 - CCNA_02476 0.16 +1.9 2,621,082 - CCNA_02476 0.16 -0.9 2,621,082 - CCNA_02476 0.16 +1.9 2,621,101 + CCNA_02476 0.18 -1.6 2,621,101 + CCNA_02476 0.18 +1.5 2,621,108 + CCNA_02476 0.18 +0.3 2,621,110 - CCNA_02476 0.19 -2.0 2,621,116 - CCNA_02476 0.19 +0.2 2,621,153 + CCNA_02476 0.23 +0.7 2,621,153 + CCNA_02476 0.23 -0.4 2,621,161 - CCNA_02476 0.23 -2.1 2,621,168 + CCNA_02476 0.24 -0.3 2,621,198 + CCNA_02476 0.27 -1.2 2,621,246 + CCNA_02476 0.31 -2.2 2,621,308 + CCNA_02476 0.37 -0.9 2,621,308 + CCNA_02476 0.37 +0.9 2,621,308 + CCNA_02476 0.37 +0.1 2,621,316 - CCNA_02476 0.38 -0.5 2,621,316 - CCNA_02476 0.38 -0.9 2,621,316 - CCNA_02476 0.38 +1.6 2,621,330 - CCNA_02476 0.39 +1.3 2,621,354 - CCNA_02476 0.41 -0.1 2,621,396 + CCNA_02476 0.45 +0.8 2,621,396 + CCNA_02476 0.45 -1.3 2,621,430 + CCNA_02476 0.48 -2.3 2,621,438 - CCNA_02476 0.49 +0.9 2,621,440 + CCNA_02476 0.49 -1.9 2,621,443 - CCNA_02476 0.49 -1.2 2,621,551 - CCNA_02476 0.60 -0.4 2,621,553 + CCNA_02476 0.60 -0.4 2,621,620 + CCNA_02476 0.66 +0.5 2,621,637 + CCNA_02476 0.68 -1.4 2,621,644 - CCNA_02476 0.68 +0.3 2,621,644 - CCNA_02476 0.68 +0.3 2,621,701 + CCNA_02476 0.73 +1.5 2,621,737 + CCNA_02476 0.77 -0.8 2,621,743 + CCNA_02476 0.77 -0.8 2,621,751 - CCNA_02476 0.78 -0.8 2,621,763 + CCNA_02476 0.79 -0.5 2,621,764 - CCNA_02476 0.79 -0.6 2,621,788 + CCNA_02476 0.82 -1.2 2,621,788 + CCNA_02476 0.82 +0.9 2,621,788 + CCNA_02476 0.82 -0.6 2,621,788 + CCNA_02476 0.82 -0.1 2,621,796 - CCNA_02476 0.82 -0.8 2,621,796 - CCNA_02476 0.82 +0.2 2,621,804 - CCNA_02476 0.83 -0.6 2,621,807 + CCNA_02476 0.83 -1.4 2,621,815 - CCNA_02476 0.84 -0.6 2,621,820 - CCNA_02476 0.84 -0.5 2,621,839 - CCNA_02476 0.86 -1.1 2,621,839 - CCNA_02476 0.86 -0.9 2,621,869 + CCNA_02476 0.89 -1.6 2,621,869 + CCNA_02476 0.89 +0.3 2,621,872 - CCNA_02476 0.89 -0.7 2,621,877 - CCNA_02476 0.90 +1.2 2,621,877 - CCNA_02476 0.90 +0.3 2,621,880 + -0.3 2,621,882 - +2.1 2,621,927 + -1.9 2,621,933 + -0.1 2,621,938 + +0.1 2,621,941 - +0.2 2,621,958 + -1.7 2,621,990 + -0.8 2,621,991 + -0.6 2,621,998 - -1.2 2,622,014 + +0.5 2,622,032 - -1.0 2,622,034 - -1.4 2,622,083 - CCNA_02477 0.11 -1.5 2,622,126 + CCNA_02477 0.15 -0.7 2,622,126 + CCNA_02477 0.15 -1.0 2,622,162 - CCNA_02477 0.19 -0.1 2,622,173 + CCNA_02477 0.20 +0.6 2,622,188 + CCNA_02477 0.22 -2.2 2,622,239 - CCNA_02477 0.27 -2.2 2,622,247 + CCNA_02477 0.28 +0.7 2,622,251 + CCNA_02477 0.28 -1.4 2,622,259 - CCNA_02477 0.29 -1.4 2,622,277 + CCNA_02477 0.31 +0.7 2,622,289 + CCNA_02477 0.32 -1.9 2,622,290 - CCNA_02477 0.32 -1.2 2,622,306 - CCNA_02477 0.34 -1.5 2,622,320 + CCNA_02477 0.35 -1.9 2,622,355 + CCNA_02477 0.39 +0.1 2,622,445 + CCNA_02477 0.49 +3.9 2,622,445 + CCNA_02477 0.49 -0.9 2,622,445 + CCNA_02477 0.49 -1.7 2,622,445 + CCNA_02477 0.49 +0.1 2,622,445 + CCNA_02477 0.49 -2.3 2,622,519 - CCNA_02477 0.56 -0.4 2,622,524 - CCNA_02477 0.57 +0.3 2,622,530 - CCNA_02477 0.58 +0.6 2,622,600 + CCNA_02477 0.65 +1.3 2,622,613 + CCNA_02477 0.66 +1.9 2,622,641 - CCNA_02477 0.69 -1.0 2,622,651 - CCNA_02477 0.70 -0.9 2,622,692 + CCNA_02477 0.75 -1.0 2,622,702 + CCNA_02477 0.76 -2.0 2,622,710 - CCNA_02477 0.76 +1.2 2,622,729 - CCNA_02477 0.78 +1.1 2,622,739 + CCNA_02477 0.79 +0.0 2,622,740 + CCNA_02477 0.80 -1.2 2,622,747 - CCNA_02477 0.80 +3.1 2,622,781 - CCNA_02477 0.84 -1.8 2,622,786 + CCNA_02477 0.84 -1.8 2,622,799 + CCNA_02477 0.86 -1.3 2,622,799 + CCNA_02477 0.86 -0.1 2,622,807 - CCNA_02477 0.87 -1.1 2,622,807 - CCNA_02477 0.87 -0.1 2,622,807 - CCNA_02477 0.87 -0.7 2,622,807 - CCNA_02477 0.87 -0.5 2,622,807 - CCNA_02477 0.87 -0.8 2,622,807 - CCNA_02477 0.87 -0.4 2,622,834 + CCNA_02477 0.89 +0.5 2,622,843 + +0.1 2,622,851 - +0.1 2,622,888 - -1.2 2,622,916 - -1.7 2,622,973 - -0.6 2,622,975 - -1.7 2,622,985 - -0.7 2,623,030 - -0.4 2,623,065 + +0.5 2,623,082 + CCNA_02478 0.11 -2.4 2,623,096 - CCNA_02478 0.13 -0.9 2,623,126 - CCNA_02478 0.16 -2.1 2,623,156 - CCNA_02478 0.19 +0.5 2,623,171 + CCNA_02478 0.21 -0.4 2,623,184 - CCNA_02478 0.22 -0.6 2,623,193 + CCNA_02478 0.23 -0.7 2,623,195 + CCNA_02478 0.24 +1.8 2,623,203 - CCNA_02478 0.24 -1.7 2,623,203 - CCNA_02478 0.24 -1.3 2,623,210 + CCNA_02478 0.25 -1.0 2,623,261 - CCNA_02478 0.31 -0.3 2,623,276 + CCNA_02478 0.33 +0.5 2,623,276 + CCNA_02478 0.33 -0.2 2,623,276 + CCNA_02478 0.33 -0.4 2,623,276 + CCNA_02478 0.33 -0.7 2,623,276 + CCNA_02478 0.33 +0.9 2,623,276 + CCNA_02478 0.33 +0.5 2,623,284 - CCNA_02478 0.33 +0.9 2,623,284 - CCNA_02478 0.33 -0.3 2,623,294 - CCNA_02478 0.35 -1.4 2,623,306 + CCNA_02478 0.36 -1.6 2,623,348 + CCNA_02478 0.41 +1.5 2,623,357 - CCNA_02478 0.42 +1.4 2,623,359 + CCNA_02478 0.42 +1.2 2,623,379 + CCNA_02478 0.44 -0.8 2,623,452 + CCNA_02478 0.52 -0.2 2,623,460 - CCNA_02478 0.53 +0.7 2,623,467 + CCNA_02478 0.54 +0.4 2,623,477 + CCNA_02478 0.55 +0.3 2,623,483 + CCNA_02478 0.55 -1.7 2,623,485 - CCNA_02478 0.56 -1.2 2,623,491 - CCNA_02478 0.56 +1.9 2,623,501 + CCNA_02478 0.57 -0.2 2,623,535 - CCNA_02478 0.61 -0.3 2,623,568 - CCNA_02478 0.65 +0.1 2,623,585 + CCNA_02478 0.67 -1.5 2,623,616 - CCNA_02478 0.70 -1.0 2,623,644 - CCNA_02478 0.73 -1.8 2,623,683 + CCNA_02478 0.78 -1.8 2,623,718 + CCNA_02478 0.82 -0.8 2,623,718 + CCNA_02478 0.82 -0.2 2,623,734 - CCNA_02478 0.83 +0.7 2,623,742 + CCNA_02478 0.84 -2.1 2,623,768 + CCNA_02478 0.87 -0.8 2,623,773 + CCNA_02478 0.88 -1.6 2,623,811 - -1.4 2,623,831 + -1.0 2,623,837 - +0.5 2,623,842 + +0.5 2,623,861 + +0.5 2,623,861 + +0.1 2,623,869 - +0.1 2,623,881 - -2.5 2,623,881 - +2.2 2,623,881 - -0.9 2,623,932 - +0.3 2,623,932 - +0.5
Or see this region's nucleotide sequence