Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02389 and CCNA_02390 are separated by 69 nucleotides CCNA_02390 and CCNA_R0056 are separated by 47 nucleotides CCNA_R0056 and CCNA_02391 are separated by 190 nucleotides
CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233
_02389
CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016
_02390
CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138
_R0056
CCNA_02391: CCNA_02391 - oxidoreductase, at 2,535,329 to 2,536,108
_02391
Position (kb)
2534
2535
2536 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2534.237 kb on - strand at 2534.247 kb on + strand at 2534.247 kb on + strand at 2534.255 kb on - strand at 2534.255 kb on - strand at 2534.301 kb on - strand at 2534.308 kb on - strand at 2534.308 kb on - strand at 2534.362 kb on + strand at 2534.372 kb on + strand at 2534.436 kb on + strand, within CCNA_02390 at 2534.477 kb on + strand, within CCNA_02390 at 2534.542 kb on - strand, within CCNA_02390 at 2534.576 kb on + strand, within CCNA_02390 at 2534.612 kb on + strand, within CCNA_02390 at 2534.644 kb on + strand, within CCNA_02390 at 2534.650 kb on + strand, within CCNA_02390 at 2534.653 kb on - strand, within CCNA_02390 at 2534.684 kb on + strand, within CCNA_02390 at 2534.689 kb on + strand, within CCNA_02390 at 2534.733 kb on + strand, within CCNA_02390 at 2534.747 kb on + strand, within CCNA_02390 at 2534.792 kb on + strand, within CCNA_02390 at 2534.819 kb on + strand, within CCNA_02390 at 2534.825 kb on + strand, within CCNA_02390 at 2534.844 kb on - strand, within CCNA_02390 at 2534.912 kb on + strand, within CCNA_02390 at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.958 kb on + strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.966 kb on - strand at 2534.968 kb on - strand at 2535.161 kb on + strand at 2535.161 kb on + strand at 2535.183 kb on + strand at 2535.201 kb on - strand at 2535.214 kb on + strand at 2535.214 kb on + strand at 2535.216 kb on + strand at 2535.222 kb on - strand at 2535.222 kb on - strand at 2535.307 kb on + strand at 2535.323 kb on + strand at 2535.325 kb on + strand at 2535.356 kb on + strand at 2535.361 kb on + strand at 2535.374 kb on - strand at 2535.379 kb on - strand at 2535.409 kb on - strand, within CCNA_02391 at 2535.445 kb on + strand, within CCNA_02391 at 2535.445 kb on + strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand, within CCNA_02391 at 2535.453 kb on - strand at 2535.467 kb on - strand, within CCNA_02391 at 2535.469 kb on + strand, within CCNA_02391 at 2535.505 kb on - strand, within CCNA_02391 at 2535.568 kb on + strand, within CCNA_02391 at 2535.570 kb on + strand, within CCNA_02391 at 2535.576 kb on - strand, within CCNA_02391 at 2535.577 kb on - strand, within CCNA_02391 at 2535.619 kb on + strand, within CCNA_02391 at 2535.623 kb on - strand, within CCNA_02391 at 2535.628 kb on - strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.637 kb on + strand, within CCNA_02391 at 2535.645 kb on - strand, within CCNA_02391 at 2535.648 kb on - strand, within CCNA_02391 at 2535.694 kb on + strand, within CCNA_02391 at 2535.708 kb on + strand, within CCNA_02391 at 2535.708 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.713 kb on + strand, within CCNA_02391 at 2535.716 kb on - strand, within CCNA_02391 at 2535.718 kb on + strand, within CCNA_02391 at 2535.721 kb on - strand, within CCNA_02391 at 2535.721 kb on - strand, within CCNA_02391 at 2535.749 kb on - strand, within CCNA_02391 at 2535.793 kb on + strand, within CCNA_02391 at 2535.831 kb on + strand, within CCNA_02391 at 2535.893 kb on + strand, within CCNA_02391 at 2535.901 kb on - strand, within CCNA_02391 at 2535.923 kb on - strand, within CCNA_02391 at 2535.932 kb on - strand, within CCNA_02391 at 2536.003 kb on + strand, within CCNA_02391 at 2536.004 kb on - strand, within CCNA_02391
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,534,237 - +1.7 2,534,247 + -0.6 2,534,247 + -0.5 2,534,255 - -1.0 2,534,255 - -2.7 2,534,301 - -1.5 2,534,308 - +0.9 2,534,308 - +0.9 2,534,362 + +2.5 2,534,372 + -0.6 2,534,436 + CCNA_02390 0.19 -0.8 2,534,477 + CCNA_02390 0.24 +0.0 2,534,542 - CCNA_02390 0.33 -0.4 2,534,576 + CCNA_02390 0.38 -0.4 2,534,612 + CCNA_02390 0.43 +0.5 2,534,644 + CCNA_02390 0.48 -1.0 2,534,650 + CCNA_02390 0.49 -0.4 2,534,653 - CCNA_02390 0.49 -1.4 2,534,684 + CCNA_02390 0.53 -1.5 2,534,689 + CCNA_02390 0.54 -0.4 2,534,733 + CCNA_02390 0.60 +0.2 2,534,747 + CCNA_02390 0.62 -0.3 2,534,792 + CCNA_02390 0.68 -0.4 2,534,819 + CCNA_02390 0.72 +0.7 2,534,825 + CCNA_02390 0.73 -1.0 2,534,844 - CCNA_02390 0.76 +1.2 2,534,912 + CCNA_02390 0.85 -1.2 2,534,958 + +0.5 2,534,958 + -0.6 2,534,958 + +0.1 2,534,958 + +0.1 2,534,958 + +0.9 2,534,958 + -0.4 2,534,958 + +0.9 2,534,966 - -0.1 2,534,966 - -1.0 2,534,966 - -1.1 2,534,966 - -0.2 2,534,966 - -0.4 2,534,968 - -0.8 2,535,161 + +0.0 2,535,161 + +0.7 2,535,183 + +0.7 2,535,201 - -1.3 2,535,214 + +2.8 2,535,214 + -0.0 2,535,216 + +0.4 2,535,222 - -0.6 2,535,222 - -1.0 2,535,307 + +2.5 2,535,323 + -0.2 2,535,325 + +1.1 2,535,356 + -0.1 2,535,361 + -3.2 2,535,374 - +0.7 2,535,379 - -0.7 2,535,409 - CCNA_02391 0.10 +0.1 2,535,445 + CCNA_02391 0.15 -1.2 2,535,445 + CCNA_02391 0.15 -0.5 2,535,453 - CCNA_02391 0.16 -0.3 2,535,453 - CCNA_02391 0.16 +2.1 2,535,453 - +2.2 2,535,467 - CCNA_02391 0.18 -0.4 2,535,469 + CCNA_02391 0.18 -1.4 2,535,505 - CCNA_02391 0.23 -0.3 2,535,568 + CCNA_02391 0.31 -1.4 2,535,570 + CCNA_02391 0.31 +0.6 2,535,576 - CCNA_02391 0.32 -0.2 2,535,577 - CCNA_02391 0.32 -2.5 2,535,619 + CCNA_02391 0.37 +0.0 2,535,623 - CCNA_02391 0.38 +0.8 2,535,628 - CCNA_02391 0.38 -1.1 2,535,637 + CCNA_02391 0.39 -0.8 2,535,637 + CCNA_02391 0.39 +0.6 2,535,637 + CCNA_02391 0.39 -0.4 2,535,637 + CCNA_02391 0.39 -1.5 2,535,645 - CCNA_02391 0.41 -0.2 2,535,648 - CCNA_02391 0.41 -1.9 2,535,694 + CCNA_02391 0.47 -0.5 2,535,708 + CCNA_02391 0.49 -0.7 2,535,708 + CCNA_02391 0.49 -0.4 2,535,713 + CCNA_02391 0.49 -0.4 2,535,713 + CCNA_02391 0.49 +0.2 2,535,716 - CCNA_02391 0.50 +0.3 2,535,718 + CCNA_02391 0.50 +0.2 2,535,721 - CCNA_02391 0.50 +0.2 2,535,721 - CCNA_02391 0.50 +0.1 2,535,749 - CCNA_02391 0.54 -1.7 2,535,793 + CCNA_02391 0.59 +0.9 2,535,831 + CCNA_02391 0.64 +0.3 2,535,893 + CCNA_02391 0.72 -2.6 2,535,901 - CCNA_02391 0.73 -1.3 2,535,923 - CCNA_02391 0.76 +1.4 2,535,932 - CCNA_02391 0.77 -2.3 2,536,003 + CCNA_02391 0.86 -0.5 2,536,004 - CCNA_02391 0.87 -0.3
Or see this region's nucleotide sequence