Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02390

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02389 and CCNA_02390 are separated by 69 nucleotidesCCNA_02390 and CCNA_R0056 are separated by 47 nucleotidesCCNA_R0056 and CCNA_02391 are separated by 190 nucleotides CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233 _02389 CCNA_02390: CCNA_02390 - phosphoglycolate phosphatase, at 2,534,303 to 2,535,016 _02390 CCNA_R0056: CCNA_R0056 - tRNA-Val, at 2,535,064 to 2,535,138 _R0056 CCNA_02391: CCNA_02391 - oxidoreductase, at 2,535,329 to 2,536,108 _02391 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2534.237 kb on - strandat 2534.247 kb on + strandat 2534.247 kb on + strandat 2534.255 kb on - strandat 2534.255 kb on - strandat 2534.301 kb on - strandat 2534.308 kb on - strandat 2534.308 kb on - strandat 2534.362 kb on + strandat 2534.372 kb on + strandat 2534.436 kb on + strand, within CCNA_02390at 2534.477 kb on + strand, within CCNA_02390at 2534.542 kb on - strand, within CCNA_02390at 2534.576 kb on + strand, within CCNA_02390at 2534.612 kb on + strand, within CCNA_02390at 2534.644 kb on + strand, within CCNA_02390at 2534.650 kb on + strand, within CCNA_02390at 2534.653 kb on - strand, within CCNA_02390at 2534.684 kb on + strand, within CCNA_02390at 2534.689 kb on + strand, within CCNA_02390at 2534.733 kb on + strand, within CCNA_02390at 2534.747 kb on + strand, within CCNA_02390at 2534.792 kb on + strand, within CCNA_02390at 2534.819 kb on + strand, within CCNA_02390at 2534.825 kb on + strand, within CCNA_02390at 2534.844 kb on - strand, within CCNA_02390at 2534.912 kb on + strand, within CCNA_02390at 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.958 kb on + strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.966 kb on - strandat 2534.968 kb on - strandat 2535.161 kb on + strandat 2535.161 kb on + strandat 2535.183 kb on + strandat 2535.201 kb on - strandat 2535.214 kb on + strandat 2535.214 kb on + strandat 2535.216 kb on + strandat 2535.222 kb on - strandat 2535.222 kb on - strandat 2535.307 kb on + strandat 2535.323 kb on + strandat 2535.325 kb on + strandat 2535.356 kb on + strandat 2535.361 kb on + strandat 2535.374 kb on - strandat 2535.379 kb on - strandat 2535.409 kb on - strand, within CCNA_02391at 2535.445 kb on + strand, within CCNA_02391at 2535.445 kb on + strand, within CCNA_02391at 2535.453 kb on - strand, within CCNA_02391at 2535.453 kb on - strand, within CCNA_02391at 2535.453 kb on - strandat 2535.467 kb on - strand, within CCNA_02391at 2535.469 kb on + strand, within CCNA_02391at 2535.505 kb on - strand, within CCNA_02391at 2535.568 kb on + strand, within CCNA_02391at 2535.570 kb on + strand, within CCNA_02391at 2535.576 kb on - strand, within CCNA_02391at 2535.577 kb on - strand, within CCNA_02391at 2535.619 kb on + strand, within CCNA_02391at 2535.623 kb on - strand, within CCNA_02391at 2535.628 kb on - strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.637 kb on + strand, within CCNA_02391at 2535.645 kb on - strand, within CCNA_02391at 2535.648 kb on - strand, within CCNA_02391at 2535.694 kb on + strand, within CCNA_02391at 2535.708 kb on + strand, within CCNA_02391at 2535.708 kb on + strand, within CCNA_02391at 2535.713 kb on + strand, within CCNA_02391at 2535.713 kb on + strand, within CCNA_02391at 2535.716 kb on - strand, within CCNA_02391at 2535.718 kb on + strand, within CCNA_02391at 2535.721 kb on - strand, within CCNA_02391at 2535.721 kb on - strand, within CCNA_02391at 2535.749 kb on - strand, within CCNA_02391at 2535.793 kb on + strand, within CCNA_02391at 2535.831 kb on + strand, within CCNA_02391at 2535.893 kb on + strand, within CCNA_02391at 2535.901 kb on - strand, within CCNA_02391at 2535.923 kb on - strand, within CCNA_02391at 2535.932 kb on - strand, within CCNA_02391at 2536.003 kb on + strand, within CCNA_02391at 2536.004 kb on - strand, within CCNA_02391

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,534,237 - +1.7
2,534,247 + -0.6
2,534,247 + -0.5
2,534,255 - -1.0
2,534,255 - -2.7
2,534,301 - -1.5
2,534,308 - +0.9
2,534,308 - +0.9
2,534,362 + +2.5
2,534,372 + -0.6
2,534,436 + CCNA_02390 0.19 -0.8
2,534,477 + CCNA_02390 0.24 +0.0
2,534,542 - CCNA_02390 0.33 -0.4
2,534,576 + CCNA_02390 0.38 -0.4
2,534,612 + CCNA_02390 0.43 +0.5
2,534,644 + CCNA_02390 0.48 -1.0
2,534,650 + CCNA_02390 0.49 -0.4
2,534,653 - CCNA_02390 0.49 -1.4
2,534,684 + CCNA_02390 0.53 -1.5
2,534,689 + CCNA_02390 0.54 -0.4
2,534,733 + CCNA_02390 0.60 +0.2
2,534,747 + CCNA_02390 0.62 -0.3
2,534,792 + CCNA_02390 0.68 -0.4
2,534,819 + CCNA_02390 0.72 +0.7
2,534,825 + CCNA_02390 0.73 -1.0
2,534,844 - CCNA_02390 0.76 +1.2
2,534,912 + CCNA_02390 0.85 -1.2
2,534,958 + +0.5
2,534,958 + -0.6
2,534,958 + +0.1
2,534,958 + +0.1
2,534,958 + +0.9
2,534,958 + -0.4
2,534,958 + +0.9
2,534,966 - -0.1
2,534,966 - -1.0
2,534,966 - -1.1
2,534,966 - -0.2
2,534,966 - -0.4
2,534,968 - -0.8
2,535,161 + +0.0
2,535,161 + +0.7
2,535,183 + +0.7
2,535,201 - -1.3
2,535,214 + +2.8
2,535,214 + -0.0
2,535,216 + +0.4
2,535,222 - -0.6
2,535,222 - -1.0
2,535,307 + +2.5
2,535,323 + -0.2
2,535,325 + +1.1
2,535,356 + -0.1
2,535,361 + -3.2
2,535,374 - +0.7
2,535,379 - -0.7
2,535,409 - CCNA_02391 0.10 +0.1
2,535,445 + CCNA_02391 0.15 -1.2
2,535,445 + CCNA_02391 0.15 -0.5
2,535,453 - CCNA_02391 0.16 -0.3
2,535,453 - CCNA_02391 0.16 +2.1
2,535,453 - +2.2
2,535,467 - CCNA_02391 0.18 -0.4
2,535,469 + CCNA_02391 0.18 -1.4
2,535,505 - CCNA_02391 0.23 -0.3
2,535,568 + CCNA_02391 0.31 -1.4
2,535,570 + CCNA_02391 0.31 +0.6
2,535,576 - CCNA_02391 0.32 -0.2
2,535,577 - CCNA_02391 0.32 -2.5
2,535,619 + CCNA_02391 0.37 +0.0
2,535,623 - CCNA_02391 0.38 +0.8
2,535,628 - CCNA_02391 0.38 -1.1
2,535,637 + CCNA_02391 0.39 -0.8
2,535,637 + CCNA_02391 0.39 +0.6
2,535,637 + CCNA_02391 0.39 -0.4
2,535,637 + CCNA_02391 0.39 -1.5
2,535,645 - CCNA_02391 0.41 -0.2
2,535,648 - CCNA_02391 0.41 -1.9
2,535,694 + CCNA_02391 0.47 -0.5
2,535,708 + CCNA_02391 0.49 -0.7
2,535,708 + CCNA_02391 0.49 -0.4
2,535,713 + CCNA_02391 0.49 -0.4
2,535,713 + CCNA_02391 0.49 +0.2
2,535,716 - CCNA_02391 0.50 +0.3
2,535,718 + CCNA_02391 0.50 +0.2
2,535,721 - CCNA_02391 0.50 +0.2
2,535,721 - CCNA_02391 0.50 +0.1
2,535,749 - CCNA_02391 0.54 -1.7
2,535,793 + CCNA_02391 0.59 +0.9
2,535,831 + CCNA_02391 0.64 +0.3
2,535,893 + CCNA_02391 0.72 -2.6
2,535,901 - CCNA_02391 0.73 -1.3
2,535,923 - CCNA_02391 0.76 +1.4
2,535,932 - CCNA_02391 0.77 -2.3
2,536,003 + CCNA_02391 0.86 -0.5
2,536,004 - CCNA_02391 0.87 -0.3

Or see this region's nucleotide sequence