Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02386

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02385 and CCNA_02386 are separated by 113 nucleotidesCCNA_02386 and CCNA_02387 overlap by 4 nucleotides CCNA_02385: CCNA_02385 - 3-deoxy-7-phosphoheptulonate synthase, at 2,528,009 to 2,529,388 _02385 CCNA_02386: CCNA_02386 - O-antigen ligase related enzyme, at 2,529,502 to 2,530,725 _02386 CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122 _02387 Position (kb) 2529 2530 2531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2528.521 kb on - strand, within CCNA_02385at 2528.589 kb on + strand, within CCNA_02385at 2528.592 kb on - strand, within CCNA_02385at 2528.599 kb on + strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.653 kb on - strand, within CCNA_02385at 2528.672 kb on - strand, within CCNA_02385at 2528.703 kb on - strand, within CCNA_02385at 2528.710 kb on + strand, within CCNA_02385at 2528.718 kb on - strand, within CCNA_02385at 2528.753 kb on + strand, within CCNA_02385at 2528.758 kb on + strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.761 kb on - strand, within CCNA_02385at 2528.763 kb on + strand, within CCNA_02385at 2528.764 kb on + strand, within CCNA_02385at 2528.774 kb on + strand, within CCNA_02385at 2528.774 kb on + strand, within CCNA_02385at 2528.829 kb on + strand, within CCNA_02385at 2528.829 kb on + strand, within CCNA_02385at 2528.830 kb on - strand, within CCNA_02385at 2528.830 kb on - strand, within CCNA_02385at 2528.830 kb on - strand, within CCNA_02385at 2528.830 kb on - strand, within CCNA_02385at 2528.842 kb on - strand, within CCNA_02385at 2528.849 kb on - strand, within CCNA_02385at 2528.849 kb on - strand, within CCNA_02385at 2528.851 kb on + strand, within CCNA_02385at 2528.851 kb on + strand, within CCNA_02385at 2528.873 kb on - strand, within CCNA_02385at 2528.888 kb on + strand, within CCNA_02385at 2528.908 kb on + strand, within CCNA_02385at 2528.938 kb on - strandat 2528.938 kb on - strand, within CCNA_02385at 2528.957 kb on + strand, within CCNA_02385at 2528.965 kb on - strand, within CCNA_02385at 2529.014 kb on - strand, within CCNA_02385at 2529.014 kb on - strand, within CCNA_02385at 2529.077 kb on - strand, within CCNA_02385at 2529.098 kb on + strand, within CCNA_02385at 2529.098 kb on + strand, within CCNA_02385at 2529.098 kb on + strand, within CCNA_02385at 2529.100 kb on - strand, within CCNA_02385at 2529.106 kb on - strand, within CCNA_02385at 2529.106 kb on - strand, within CCNA_02385at 2529.106 kb on - strand, within CCNA_02385at 2529.106 kb on - strand, within CCNA_02385at 2529.106 kb on - strand, within CCNA_02385at 2529.116 kb on + strand, within CCNA_02385at 2529.121 kb on + strandat 2529.143 kb on + strand, within CCNA_02385at 2529.151 kb on - strand, within CCNA_02385at 2529.161 kb on - strand, within CCNA_02385at 2529.163 kb on + strand, within CCNA_02385at 2529.163 kb on + strand, within CCNA_02385at 2529.171 kb on - strand, within CCNA_02385at 2529.171 kb on - strand, within CCNA_02385at 2529.209 kb on + strand, within CCNA_02385at 2529.209 kb on + strand, within CCNA_02385at 2529.211 kb on - strand, within CCNA_02385at 2529.286 kb on + strandat 2529.287 kb on + strandat 2529.288 kb on - strandat 2529.301 kb on + strandat 2529.309 kb on + strandat 2529.356 kb on - strandat 2529.384 kb on + strandat 2529.389 kb on + strandat 2529.584 kb on - strandat 2529.725 kb on + strand, within CCNA_02386at 2529.730 kb on - strand, within CCNA_02386at 2529.739 kb on - strand, within CCNA_02386at 2529.743 kb on + strand, within CCNA_02386at 2529.746 kb on - strand, within CCNA_02386at 2529.748 kb on + strand, within CCNA_02386at 2529.751 kb on - strand, within CCNA_02386at 2529.756 kb on - strand, within CCNA_02386at 2529.797 kb on - strand, within CCNA_02386at 2529.804 kb on - strand, within CCNA_02386at 2529.907 kb on - strand, within CCNA_02386at 2529.907 kb on - strand, within CCNA_02386at 2529.921 kb on + strand, within CCNA_02386at 2529.929 kb on - strand, within CCNA_02386at 2529.929 kb on - strand, within CCNA_02386at 2529.929 kb on - strand, within CCNA_02386at 2529.935 kb on + strand, within CCNA_02386at 2529.943 kb on - strand, within CCNA_02386at 2529.943 kb on - strand, within CCNA_02386at 2529.943 kb on - strand, within CCNA_02386at 2529.943 kb on - strand, within CCNA_02386at 2529.959 kb on + strand, within CCNA_02386at 2529.959 kb on + strand, within CCNA_02386at 2529.969 kb on - strand, within CCNA_02386at 2529.969 kb on - strand, within CCNA_02386at 2529.977 kb on - strand, within CCNA_02386at 2529.992 kb on - strand, within CCNA_02386at 2530.056 kb on - strand, within CCNA_02386at 2530.078 kb on + strand, within CCNA_02386at 2530.158 kb on + strand, within CCNA_02386at 2530.211 kb on + strand, within CCNA_02386at 2530.219 kb on - strand, within CCNA_02386at 2530.245 kb on - strand, within CCNA_02386at 2530.256 kb on - strand, within CCNA_02386at 2530.266 kb on - strand, within CCNA_02386at 2530.280 kb on + strand, within CCNA_02386at 2530.319 kb on - strand, within CCNA_02386at 2530.319 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.397 kb on + strand, within CCNA_02386at 2530.426 kb on + strand, within CCNA_02386at 2530.433 kb on - strand, within CCNA_02386at 2530.433 kb on - strand, within CCNA_02386at 2530.441 kb on - strand, within CCNA_02386at 2530.459 kb on - strand, within CCNA_02386at 2530.468 kb on - strand, within CCNA_02386at 2530.468 kb on - strand, within CCNA_02386at 2530.534 kb on - strand, within CCNA_02386at 2530.547 kb on + strand, within CCNA_02386at 2530.550 kb on - strand, within CCNA_02386at 2530.559 kb on + strand, within CCNA_02386at 2530.565 kb on - strand, within CCNA_02386at 2530.583 kb on - strand, within CCNA_02386at 2530.614 kb on + strandat 2530.614 kb on + strandat 2530.622 kb on - strandat 2530.637 kb on - strandat 2530.686 kb on + strandat 2530.694 kb on + strandat 2530.750 kb on + strandat 2530.777 kb on + strandat 2530.788 kb on + strandat 2530.877 kb on + strand, within CCNA_02387at 2530.928 kb on + strand, within CCNA_02387at 2530.947 kb on - strand, within CCNA_02387at 2531.001 kb on + strand, within CCNA_02387at 2531.009 kb on - strand, within CCNA_02387at 2531.041 kb on + strand, within CCNA_02387at 2531.049 kb on - strand, within CCNA_02387at 2531.049 kb on - strand, within CCNA_02387at 2531.051 kb on - strand, within CCNA_02387at 2531.053 kb on + strand, within CCNA_02387at 2531.136 kb on + strand, within CCNA_02387at 2531.203 kb on + strand, within CCNA_02387at 2531.211 kb on - strand, within CCNA_02387at 2531.211 kb on - strand, within CCNA_02387at 2531.226 kb on - strand, within CCNA_02387at 2531.254 kb on + strandat 2531.262 kb on - strand, within CCNA_02387at 2531.275 kb on - strand, within CCNA_02387at 2531.288 kb on + strand, within CCNA_02387at 2531.357 kb on - strand, within CCNA_02387at 2531.359 kb on + strand, within CCNA_02387at 2531.411 kb on - strand, within CCNA_02387at 2531.418 kb on + strand, within CCNA_02387at 2531.418 kb on + strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.429 kb on + strand, within CCNA_02387at 2531.437 kb on - strand, within CCNA_02387at 2531.437 kb on - strand, within CCNA_02387at 2531.523 kb on + strand, within CCNA_02387at 2531.550 kb on - strand, within CCNA_02387at 2531.550 kb on - strand, within CCNA_02387at 2531.576 kb on - strand, within CCNA_02387at 2531.596 kb on + strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strandat 2531.607 kb on + strand, within CCNA_02387at 2531.645 kb on + strand, within CCNA_02387at 2531.706 kb on + strand, within CCNA_02387at 2531.708 kb on + strand, within CCNA_02387at 2531.710 kb on + strand, within CCNA_02387at 2531.710 kb on + strand, within CCNA_02387at 2531.718 kb on - strand, within CCNA_02387

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,528,521 - CCNA_02385 0.37 -1.6
2,528,589 + CCNA_02385 0.42 +0.8
2,528,592 - CCNA_02385 0.42 -0.4
2,528,599 + CCNA_02385 0.43 +1.9
2,528,653 - CCNA_02385 0.47 -1.5
2,528,653 - CCNA_02385 0.47 -1.4
2,528,653 - CCNA_02385 0.47 +0.9
2,528,653 - CCNA_02385 0.47 -1.0
2,528,672 - CCNA_02385 0.48 +2.2
2,528,703 - CCNA_02385 0.50 +0.3
2,528,710 + CCNA_02385 0.51 -0.1
2,528,718 - CCNA_02385 0.51 -2.5
2,528,753 + CCNA_02385 0.54 -1.8
2,528,758 + CCNA_02385 0.54 -0.9
2,528,761 - CCNA_02385 0.54 -0.5
2,528,761 - CCNA_02385 0.54 +0.4
2,528,761 - CCNA_02385 0.54 -0.0
2,528,761 - CCNA_02385 0.54 -0.5
2,528,763 + CCNA_02385 0.55 -2.8
2,528,764 + CCNA_02385 0.55 +1.5
2,528,774 + CCNA_02385 0.55 -1.7
2,528,774 + CCNA_02385 0.55 +0.7
2,528,829 + CCNA_02385 0.59 -0.1
2,528,829 + CCNA_02385 0.59 -0.7
2,528,830 - CCNA_02385 0.59 -1.7
2,528,830 - CCNA_02385 0.59 -0.3
2,528,830 - CCNA_02385 0.59 +2.3
2,528,830 - CCNA_02385 0.59 +0.2
2,528,842 - CCNA_02385 0.60 +0.2
2,528,849 - CCNA_02385 0.61 -1.6
2,528,849 - CCNA_02385 0.61 +2.5
2,528,851 + CCNA_02385 0.61 -0.8
2,528,851 + CCNA_02385 0.61 -1.4
2,528,873 - CCNA_02385 0.63 -1.3
2,528,888 + CCNA_02385 0.64 -2.4
2,528,908 + CCNA_02385 0.65 -2.3
2,528,938 - +3.5
2,528,938 - CCNA_02385 0.67 +1.6
2,528,957 + CCNA_02385 0.69 +0.2
2,528,965 - CCNA_02385 0.69 -0.3
2,529,014 - CCNA_02385 0.73 +0.6
2,529,014 - CCNA_02385 0.73 -1.8
2,529,077 - CCNA_02385 0.77 -0.6
2,529,098 + CCNA_02385 0.79 -0.3
2,529,098 + CCNA_02385 0.79 +0.4
2,529,098 + CCNA_02385 0.79 -0.2
2,529,100 - CCNA_02385 0.79 -2.8
2,529,106 - CCNA_02385 0.79 -0.9
2,529,106 - CCNA_02385 0.79 -1.5
2,529,106 - CCNA_02385 0.79 +1.6
2,529,106 - CCNA_02385 0.79 -0.2
2,529,106 - CCNA_02385 0.79 +0.5
2,529,116 + CCNA_02385 0.80 -0.1
2,529,121 + +2.5
2,529,143 + CCNA_02385 0.82 -0.8
2,529,151 - CCNA_02385 0.83 -1.0
2,529,161 - CCNA_02385 0.83 +2.5
2,529,163 + CCNA_02385 0.84 +0.5
2,529,163 + CCNA_02385 0.84 +0.5
2,529,171 - CCNA_02385 0.84 +0.8
2,529,171 - CCNA_02385 0.84 +0.1
2,529,209 + CCNA_02385 0.87 -0.2
2,529,209 + CCNA_02385 0.87 -0.1
2,529,211 - CCNA_02385 0.87 +0.6
2,529,286 + -0.1
2,529,287 + -1.9
2,529,288 - -0.5
2,529,301 + -1.8
2,529,309 + -0.3
2,529,356 - +1.5
2,529,384 + -0.8
2,529,389 + -2.1
2,529,584 - -1.4
2,529,725 + CCNA_02386 0.18 -0.8
2,529,730 - CCNA_02386 0.19 -2.3
2,529,739 - CCNA_02386 0.19 -1.8
2,529,743 + CCNA_02386 0.20 +0.0
2,529,746 - CCNA_02386 0.20 -0.8
2,529,748 + CCNA_02386 0.20 -0.3
2,529,751 - CCNA_02386 0.20 -0.8
2,529,756 - CCNA_02386 0.21 -0.5
2,529,797 - CCNA_02386 0.24 -0.0
2,529,804 - CCNA_02386 0.25 -1.9
2,529,907 - CCNA_02386 0.33 -1.6
2,529,907 - CCNA_02386 0.33 -0.5
2,529,921 + CCNA_02386 0.34 -1.3
2,529,929 - CCNA_02386 0.35 -1.3
2,529,929 - CCNA_02386 0.35 -1.6
2,529,929 - CCNA_02386 0.35 +0.3
2,529,935 + CCNA_02386 0.35 -0.5
2,529,943 - CCNA_02386 0.36 -0.2
2,529,943 - CCNA_02386 0.36 -2.8
2,529,943 - CCNA_02386 0.36 -1.8
2,529,943 - CCNA_02386 0.36 -1.9
2,529,959 + CCNA_02386 0.37 -0.4
2,529,959 + CCNA_02386 0.37 -0.6
2,529,969 - CCNA_02386 0.38 -1.4
2,529,969 - CCNA_02386 0.38 -1.9
2,529,977 - CCNA_02386 0.39 +1.2
2,529,992 - CCNA_02386 0.40 -1.0
2,530,056 - CCNA_02386 0.45 -2.0
2,530,078 + CCNA_02386 0.47 -0.1
2,530,158 + CCNA_02386 0.54 -0.7
2,530,211 + CCNA_02386 0.58 +1.3
2,530,219 - CCNA_02386 0.59 +0.1
2,530,245 - CCNA_02386 0.61 -0.9
2,530,256 - CCNA_02386 0.62 -1.0
2,530,266 - CCNA_02386 0.62 -0.6
2,530,280 + CCNA_02386 0.64 -0.0
2,530,319 - CCNA_02386 0.67 -1.9
2,530,319 - CCNA_02386 0.67 -1.5
2,530,343 - CCNA_02386 0.69 -3.1
2,530,343 - CCNA_02386 0.69 -1.5
2,530,343 - CCNA_02386 0.69 -0.3
2,530,343 - CCNA_02386 0.69 -1.5
2,530,397 + CCNA_02386 0.73 -0.0
2,530,426 + CCNA_02386 0.75 +0.8
2,530,433 - CCNA_02386 0.76 +0.7
2,530,433 - CCNA_02386 0.76 -1.7
2,530,441 - CCNA_02386 0.77 -0.3
2,530,459 - CCNA_02386 0.78 -1.7
2,530,468 - CCNA_02386 0.79 -1.7
2,530,468 - CCNA_02386 0.79 -1.8
2,530,534 - CCNA_02386 0.84 -0.5
2,530,547 + CCNA_02386 0.85 -0.3
2,530,550 - CCNA_02386 0.86 -2.0
2,530,559 + CCNA_02386 0.86 -0.1
2,530,565 - CCNA_02386 0.87 -2.0
2,530,583 - CCNA_02386 0.88 +0.7
2,530,614 + +0.7
2,530,614 + -1.9
2,530,622 - -1.7
2,530,637 - -2.0
2,530,686 + +0.2
2,530,694 + +1.2
2,530,750 + -0.9
2,530,777 + +0.7
2,530,788 + +0.4
2,530,877 + CCNA_02387 0.11 -0.8
2,530,928 + CCNA_02387 0.15 +0.6
2,530,947 - CCNA_02387 0.16 +0.3
2,531,001 + CCNA_02387 0.20 +0.4
2,531,009 - CCNA_02387 0.20 -0.3
2,531,041 + CCNA_02387 0.23 +0.1
2,531,049 - CCNA_02387 0.23 +0.5
2,531,049 - CCNA_02387 0.23 +0.1
2,531,051 - CCNA_02387 0.23 -1.9
2,531,053 + CCNA_02387 0.24 +0.4
2,531,136 + CCNA_02387 0.30 +1.2
2,531,203 + CCNA_02387 0.34 -0.6
2,531,211 - CCNA_02387 0.35 -0.3
2,531,211 - CCNA_02387 0.35 +1.5
2,531,226 - CCNA_02387 0.36 -0.9
2,531,254 + +2.9
2,531,262 - CCNA_02387 0.39 +0.7
2,531,275 - CCNA_02387 0.39 +0.1
2,531,288 + CCNA_02387 0.40 -0.2
2,531,357 - CCNA_02387 0.45 +0.3
2,531,359 + CCNA_02387 0.45 +0.8
2,531,411 - CCNA_02387 0.49 -1.9
2,531,418 + CCNA_02387 0.50 +0.9
2,531,418 + CCNA_02387 0.50 -0.4
2,531,426 - CCNA_02387 0.50 +0.4
2,531,426 - CCNA_02387 0.50 +1.0
2,531,426 - CCNA_02387 0.50 -2.0
2,531,426 - CCNA_02387 0.50 +0.0
2,531,429 + CCNA_02387 0.50 -0.1
2,531,437 - CCNA_02387 0.51 -0.1
2,531,437 - CCNA_02387 0.51 -0.5
2,531,523 + CCNA_02387 0.57 +0.7
2,531,550 - CCNA_02387 0.59 +0.8
2,531,550 - CCNA_02387 0.59 -1.7
2,531,576 - CCNA_02387 0.61 +0.3
2,531,596 + CCNA_02387 0.62 -0.8
2,531,604 - CCNA_02387 0.63 +1.2
2,531,604 - CCNA_02387 0.63 +1.5
2,531,604 - CCNA_02387 0.63 -0.5
2,531,604 - CCNA_02387 0.63 -1.6
2,531,604 - +2.9
2,531,607 + CCNA_02387 0.63 -1.6
2,531,645 + CCNA_02387 0.66 -1.6
2,531,706 + CCNA_02387 0.70 -0.4
2,531,708 + CCNA_02387 0.70 +0.5
2,531,710 + CCNA_02387 0.71 +0.6
2,531,710 + CCNA_02387 0.71 -0.1
2,531,718 - CCNA_02387 0.71 +0.0

Or see this region's nucleotide sequence