Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02385 and CCNA_02386 are separated by 113 nucleotides CCNA_02386 and CCNA_02387 overlap by 4 nucleotides
CCNA_02385: CCNA_02385 - 3-deoxy-7-phosphoheptulonate synthase, at 2,528,009 to 2,529,388
_02385
CCNA_02386: CCNA_02386 - O-antigen ligase related enzyme, at 2,529,502 to 2,530,725
_02386
CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122
_02387
Position (kb)
2529
2530
2531 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2528.521 kb on - strand, within CCNA_02385 at 2528.589 kb on + strand, within CCNA_02385 at 2528.592 kb on - strand, within CCNA_02385 at 2528.599 kb on + strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.653 kb on - strand, within CCNA_02385 at 2528.672 kb on - strand, within CCNA_02385 at 2528.703 kb on - strand, within CCNA_02385 at 2528.710 kb on + strand, within CCNA_02385 at 2528.718 kb on - strand, within CCNA_02385 at 2528.753 kb on + strand, within CCNA_02385 at 2528.758 kb on + strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.761 kb on - strand, within CCNA_02385 at 2528.763 kb on + strand, within CCNA_02385 at 2528.764 kb on + strand, within CCNA_02385 at 2528.774 kb on + strand, within CCNA_02385 at 2528.774 kb on + strand, within CCNA_02385 at 2528.829 kb on + strand, within CCNA_02385 at 2528.829 kb on + strand, within CCNA_02385 at 2528.830 kb on - strand, within CCNA_02385 at 2528.830 kb on - strand, within CCNA_02385 at 2528.830 kb on - strand, within CCNA_02385 at 2528.830 kb on - strand, within CCNA_02385 at 2528.842 kb on - strand, within CCNA_02385 at 2528.849 kb on - strand, within CCNA_02385 at 2528.849 kb on - strand, within CCNA_02385 at 2528.851 kb on + strand, within CCNA_02385 at 2528.851 kb on + strand, within CCNA_02385 at 2528.873 kb on - strand, within CCNA_02385 at 2528.888 kb on + strand, within CCNA_02385 at 2528.908 kb on + strand, within CCNA_02385 at 2528.938 kb on - strand at 2528.938 kb on - strand, within CCNA_02385 at 2528.957 kb on + strand, within CCNA_02385 at 2528.965 kb on - strand, within CCNA_02385 at 2529.014 kb on - strand, within CCNA_02385 at 2529.014 kb on - strand, within CCNA_02385 at 2529.077 kb on - strand, within CCNA_02385 at 2529.098 kb on + strand, within CCNA_02385 at 2529.098 kb on + strand, within CCNA_02385 at 2529.098 kb on + strand, within CCNA_02385 at 2529.100 kb on - strand, within CCNA_02385 at 2529.106 kb on - strand, within CCNA_02385 at 2529.106 kb on - strand, within CCNA_02385 at 2529.106 kb on - strand, within CCNA_02385 at 2529.106 kb on - strand, within CCNA_02385 at 2529.106 kb on - strand, within CCNA_02385 at 2529.116 kb on + strand, within CCNA_02385 at 2529.121 kb on + strand at 2529.143 kb on + strand, within CCNA_02385 at 2529.151 kb on - strand, within CCNA_02385 at 2529.161 kb on - strand, within CCNA_02385 at 2529.163 kb on + strand, within CCNA_02385 at 2529.163 kb on + strand, within CCNA_02385 at 2529.171 kb on - strand, within CCNA_02385 at 2529.171 kb on - strand, within CCNA_02385 at 2529.209 kb on + strand, within CCNA_02385 at 2529.209 kb on + strand, within CCNA_02385 at 2529.211 kb on - strand, within CCNA_02385 at 2529.286 kb on + strand at 2529.287 kb on + strand at 2529.288 kb on - strand at 2529.301 kb on + strand at 2529.309 kb on + strand at 2529.356 kb on - strand at 2529.384 kb on + strand at 2529.389 kb on + strand at 2529.584 kb on - strand at 2529.725 kb on + strand, within CCNA_02386 at 2529.730 kb on - strand, within CCNA_02386 at 2529.739 kb on - strand, within CCNA_02386 at 2529.743 kb on + strand, within CCNA_02386 at 2529.746 kb on - strand, within CCNA_02386 at 2529.748 kb on + strand, within CCNA_02386 at 2529.751 kb on - strand, within CCNA_02386 at 2529.756 kb on - strand, within CCNA_02386 at 2529.797 kb on - strand, within CCNA_02386 at 2529.804 kb on - strand, within CCNA_02386 at 2529.907 kb on - strand, within CCNA_02386 at 2529.907 kb on - strand, within CCNA_02386 at 2529.921 kb on + strand, within CCNA_02386 at 2529.929 kb on - strand, within CCNA_02386 at 2529.929 kb on - strand, within CCNA_02386 at 2529.929 kb on - strand, within CCNA_02386 at 2529.935 kb on + strand, within CCNA_02386 at 2529.943 kb on - strand, within CCNA_02386 at 2529.943 kb on - strand, within CCNA_02386 at 2529.943 kb on - strand, within CCNA_02386 at 2529.943 kb on - strand, within CCNA_02386 at 2529.959 kb on + strand, within CCNA_02386 at 2529.959 kb on + strand, within CCNA_02386 at 2529.969 kb on - strand, within CCNA_02386 at 2529.969 kb on - strand, within CCNA_02386 at 2529.977 kb on - strand, within CCNA_02386 at 2529.992 kb on - strand, within CCNA_02386 at 2530.056 kb on - strand, within CCNA_02386 at 2530.078 kb on + strand, within CCNA_02386 at 2530.158 kb on + strand, within CCNA_02386 at 2530.211 kb on + strand, within CCNA_02386 at 2530.219 kb on - strand, within CCNA_02386 at 2530.245 kb on - strand, within CCNA_02386 at 2530.256 kb on - strand, within CCNA_02386 at 2530.266 kb on - strand, within CCNA_02386 at 2530.280 kb on + strand, within CCNA_02386 at 2530.319 kb on - strand, within CCNA_02386 at 2530.319 kb on - strand, within CCNA_02386 at 2530.343 kb on - strand, within CCNA_02386 at 2530.343 kb on - strand, within CCNA_02386 at 2530.343 kb on - strand, within CCNA_02386 at 2530.343 kb on - strand, within CCNA_02386 at 2530.397 kb on + strand, within CCNA_02386 at 2530.426 kb on + strand, within CCNA_02386 at 2530.433 kb on - strand, within CCNA_02386 at 2530.433 kb on - strand, within CCNA_02386 at 2530.441 kb on - strand, within CCNA_02386 at 2530.459 kb on - strand, within CCNA_02386 at 2530.468 kb on - strand, within CCNA_02386 at 2530.468 kb on - strand, within CCNA_02386 at 2530.534 kb on - strand, within CCNA_02386 at 2530.547 kb on + strand, within CCNA_02386 at 2530.550 kb on - strand, within CCNA_02386 at 2530.559 kb on + strand, within CCNA_02386 at 2530.565 kb on - strand, within CCNA_02386 at 2530.583 kb on - strand, within CCNA_02386 at 2530.614 kb on + strand at 2530.614 kb on + strand at 2530.622 kb on - strand at 2530.637 kb on - strand at 2530.686 kb on + strand at 2530.694 kb on + strand at 2530.750 kb on + strand at 2530.777 kb on + strand at 2530.788 kb on + strand at 2530.877 kb on + strand, within CCNA_02387 at 2530.928 kb on + strand, within CCNA_02387 at 2530.947 kb on - strand, within CCNA_02387 at 2531.001 kb on + strand, within CCNA_02387 at 2531.009 kb on - strand, within CCNA_02387 at 2531.041 kb on + strand, within CCNA_02387 at 2531.049 kb on - strand, within CCNA_02387 at 2531.049 kb on - strand, within CCNA_02387 at 2531.051 kb on - strand, within CCNA_02387 at 2531.053 kb on + strand, within CCNA_02387 at 2531.136 kb on + strand, within CCNA_02387 at 2531.203 kb on + strand, within CCNA_02387 at 2531.211 kb on - strand, within CCNA_02387 at 2531.211 kb on - strand, within CCNA_02387 at 2531.226 kb on - strand, within CCNA_02387 at 2531.254 kb on + strand at 2531.262 kb on - strand, within CCNA_02387 at 2531.275 kb on - strand, within CCNA_02387 at 2531.288 kb on + strand, within CCNA_02387 at 2531.357 kb on - strand, within CCNA_02387 at 2531.359 kb on + strand, within CCNA_02387 at 2531.411 kb on - strand, within CCNA_02387 at 2531.418 kb on + strand, within CCNA_02387 at 2531.418 kb on + strand, within CCNA_02387 at 2531.426 kb on - strand, within CCNA_02387 at 2531.426 kb on - strand, within CCNA_02387 at 2531.426 kb on - strand, within CCNA_02387 at 2531.426 kb on - strand, within CCNA_02387 at 2531.429 kb on + strand, within CCNA_02387 at 2531.437 kb on - strand, within CCNA_02387 at 2531.437 kb on - strand, within CCNA_02387 at 2531.523 kb on + strand, within CCNA_02387 at 2531.550 kb on - strand, within CCNA_02387 at 2531.550 kb on - strand, within CCNA_02387 at 2531.576 kb on - strand, within CCNA_02387 at 2531.596 kb on + strand, within CCNA_02387 at 2531.604 kb on - strand, within CCNA_02387 at 2531.604 kb on - strand, within CCNA_02387 at 2531.604 kb on - strand, within CCNA_02387 at 2531.604 kb on - strand, within CCNA_02387 at 2531.604 kb on - strand at 2531.607 kb on + strand, within CCNA_02387 at 2531.645 kb on + strand, within CCNA_02387 at 2531.706 kb on + strand, within CCNA_02387 at 2531.708 kb on + strand, within CCNA_02387 at 2531.710 kb on + strand, within CCNA_02387 at 2531.710 kb on + strand, within CCNA_02387 at 2531.718 kb on - strand, within CCNA_02387
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,528,521 - CCNA_02385 0.37 -1.6 2,528,589 + CCNA_02385 0.42 +0.8 2,528,592 - CCNA_02385 0.42 -0.4 2,528,599 + CCNA_02385 0.43 +1.9 2,528,653 - CCNA_02385 0.47 -1.5 2,528,653 - CCNA_02385 0.47 -1.4 2,528,653 - CCNA_02385 0.47 +0.9 2,528,653 - CCNA_02385 0.47 -1.0 2,528,672 - CCNA_02385 0.48 +2.2 2,528,703 - CCNA_02385 0.50 +0.3 2,528,710 + CCNA_02385 0.51 -0.1 2,528,718 - CCNA_02385 0.51 -2.5 2,528,753 + CCNA_02385 0.54 -1.8 2,528,758 + CCNA_02385 0.54 -0.9 2,528,761 - CCNA_02385 0.54 -0.5 2,528,761 - CCNA_02385 0.54 +0.4 2,528,761 - CCNA_02385 0.54 -0.0 2,528,761 - CCNA_02385 0.54 -0.5 2,528,763 + CCNA_02385 0.55 -2.8 2,528,764 + CCNA_02385 0.55 +1.5 2,528,774 + CCNA_02385 0.55 -1.7 2,528,774 + CCNA_02385 0.55 +0.7 2,528,829 + CCNA_02385 0.59 -0.1 2,528,829 + CCNA_02385 0.59 -0.7 2,528,830 - CCNA_02385 0.59 -1.7 2,528,830 - CCNA_02385 0.59 -0.3 2,528,830 - CCNA_02385 0.59 +2.3 2,528,830 - CCNA_02385 0.59 +0.2 2,528,842 - CCNA_02385 0.60 +0.2 2,528,849 - CCNA_02385 0.61 -1.6 2,528,849 - CCNA_02385 0.61 +2.5 2,528,851 + CCNA_02385 0.61 -0.8 2,528,851 + CCNA_02385 0.61 -1.4 2,528,873 - CCNA_02385 0.63 -1.3 2,528,888 + CCNA_02385 0.64 -2.4 2,528,908 + CCNA_02385 0.65 -2.3 2,528,938 - +3.5 2,528,938 - CCNA_02385 0.67 +1.6 2,528,957 + CCNA_02385 0.69 +0.2 2,528,965 - CCNA_02385 0.69 -0.3 2,529,014 - CCNA_02385 0.73 +0.6 2,529,014 - CCNA_02385 0.73 -1.8 2,529,077 - CCNA_02385 0.77 -0.6 2,529,098 + CCNA_02385 0.79 -0.3 2,529,098 + CCNA_02385 0.79 +0.4 2,529,098 + CCNA_02385 0.79 -0.2 2,529,100 - CCNA_02385 0.79 -2.8 2,529,106 - CCNA_02385 0.79 -0.9 2,529,106 - CCNA_02385 0.79 -1.5 2,529,106 - CCNA_02385 0.79 +1.6 2,529,106 - CCNA_02385 0.79 -0.2 2,529,106 - CCNA_02385 0.79 +0.5 2,529,116 + CCNA_02385 0.80 -0.1 2,529,121 + +2.5 2,529,143 + CCNA_02385 0.82 -0.8 2,529,151 - CCNA_02385 0.83 -1.0 2,529,161 - CCNA_02385 0.83 +2.5 2,529,163 + CCNA_02385 0.84 +0.5 2,529,163 + CCNA_02385 0.84 +0.5 2,529,171 - CCNA_02385 0.84 +0.8 2,529,171 - CCNA_02385 0.84 +0.1 2,529,209 + CCNA_02385 0.87 -0.2 2,529,209 + CCNA_02385 0.87 -0.1 2,529,211 - CCNA_02385 0.87 +0.6 2,529,286 + -0.1 2,529,287 + -1.9 2,529,288 - -0.5 2,529,301 + -1.8 2,529,309 + -0.3 2,529,356 - +1.5 2,529,384 + -0.8 2,529,389 + -2.1 2,529,584 - -1.4 2,529,725 + CCNA_02386 0.18 -0.8 2,529,730 - CCNA_02386 0.19 -2.3 2,529,739 - CCNA_02386 0.19 -1.8 2,529,743 + CCNA_02386 0.20 +0.0 2,529,746 - CCNA_02386 0.20 -0.8 2,529,748 + CCNA_02386 0.20 -0.3 2,529,751 - CCNA_02386 0.20 -0.8 2,529,756 - CCNA_02386 0.21 -0.5 2,529,797 - CCNA_02386 0.24 -0.0 2,529,804 - CCNA_02386 0.25 -1.9 2,529,907 - CCNA_02386 0.33 -1.6 2,529,907 - CCNA_02386 0.33 -0.5 2,529,921 + CCNA_02386 0.34 -1.3 2,529,929 - CCNA_02386 0.35 -1.3 2,529,929 - CCNA_02386 0.35 -1.6 2,529,929 - CCNA_02386 0.35 +0.3 2,529,935 + CCNA_02386 0.35 -0.5 2,529,943 - CCNA_02386 0.36 -0.2 2,529,943 - CCNA_02386 0.36 -2.8 2,529,943 - CCNA_02386 0.36 -1.8 2,529,943 - CCNA_02386 0.36 -1.9 2,529,959 + CCNA_02386 0.37 -0.4 2,529,959 + CCNA_02386 0.37 -0.6 2,529,969 - CCNA_02386 0.38 -1.4 2,529,969 - CCNA_02386 0.38 -1.9 2,529,977 - CCNA_02386 0.39 +1.2 2,529,992 - CCNA_02386 0.40 -1.0 2,530,056 - CCNA_02386 0.45 -2.0 2,530,078 + CCNA_02386 0.47 -0.1 2,530,158 + CCNA_02386 0.54 -0.7 2,530,211 + CCNA_02386 0.58 +1.3 2,530,219 - CCNA_02386 0.59 +0.1 2,530,245 - CCNA_02386 0.61 -0.9 2,530,256 - CCNA_02386 0.62 -1.0 2,530,266 - CCNA_02386 0.62 -0.6 2,530,280 + CCNA_02386 0.64 -0.0 2,530,319 - CCNA_02386 0.67 -1.9 2,530,319 - CCNA_02386 0.67 -1.5 2,530,343 - CCNA_02386 0.69 -3.1 2,530,343 - CCNA_02386 0.69 -1.5 2,530,343 - CCNA_02386 0.69 -0.3 2,530,343 - CCNA_02386 0.69 -1.5 2,530,397 + CCNA_02386 0.73 -0.0 2,530,426 + CCNA_02386 0.75 +0.8 2,530,433 - CCNA_02386 0.76 +0.7 2,530,433 - CCNA_02386 0.76 -1.7 2,530,441 - CCNA_02386 0.77 -0.3 2,530,459 - CCNA_02386 0.78 -1.7 2,530,468 - CCNA_02386 0.79 -1.7 2,530,468 - CCNA_02386 0.79 -1.8 2,530,534 - CCNA_02386 0.84 -0.5 2,530,547 + CCNA_02386 0.85 -0.3 2,530,550 - CCNA_02386 0.86 -2.0 2,530,559 + CCNA_02386 0.86 -0.1 2,530,565 - CCNA_02386 0.87 -2.0 2,530,583 - CCNA_02386 0.88 +0.7 2,530,614 + +0.7 2,530,614 + -1.9 2,530,622 - -1.7 2,530,637 - -2.0 2,530,686 + +0.2 2,530,694 + +1.2 2,530,750 + -0.9 2,530,777 + +0.7 2,530,788 + +0.4 2,530,877 + CCNA_02387 0.11 -0.8 2,530,928 + CCNA_02387 0.15 +0.6 2,530,947 - CCNA_02387 0.16 +0.3 2,531,001 + CCNA_02387 0.20 +0.4 2,531,009 - CCNA_02387 0.20 -0.3 2,531,041 + CCNA_02387 0.23 +0.1 2,531,049 - CCNA_02387 0.23 +0.5 2,531,049 - CCNA_02387 0.23 +0.1 2,531,051 - CCNA_02387 0.23 -1.9 2,531,053 + CCNA_02387 0.24 +0.4 2,531,136 + CCNA_02387 0.30 +1.2 2,531,203 + CCNA_02387 0.34 -0.6 2,531,211 - CCNA_02387 0.35 -0.3 2,531,211 - CCNA_02387 0.35 +1.5 2,531,226 - CCNA_02387 0.36 -0.9 2,531,254 + +2.9 2,531,262 - CCNA_02387 0.39 +0.7 2,531,275 - CCNA_02387 0.39 +0.1 2,531,288 + CCNA_02387 0.40 -0.2 2,531,357 - CCNA_02387 0.45 +0.3 2,531,359 + CCNA_02387 0.45 +0.8 2,531,411 - CCNA_02387 0.49 -1.9 2,531,418 + CCNA_02387 0.50 +0.9 2,531,418 + CCNA_02387 0.50 -0.4 2,531,426 - CCNA_02387 0.50 +0.4 2,531,426 - CCNA_02387 0.50 +1.0 2,531,426 - CCNA_02387 0.50 -2.0 2,531,426 - CCNA_02387 0.50 +0.0 2,531,429 + CCNA_02387 0.50 -0.1 2,531,437 - CCNA_02387 0.51 -0.1 2,531,437 - CCNA_02387 0.51 -0.5 2,531,523 + CCNA_02387 0.57 +0.7 2,531,550 - CCNA_02387 0.59 +0.8 2,531,550 - CCNA_02387 0.59 -1.7 2,531,576 - CCNA_02387 0.61 +0.3 2,531,596 + CCNA_02387 0.62 -0.8 2,531,604 - CCNA_02387 0.63 +1.2 2,531,604 - CCNA_02387 0.63 +1.5 2,531,604 - CCNA_02387 0.63 -0.5 2,531,604 - CCNA_02387 0.63 -1.6 2,531,604 - +2.9 2,531,607 + CCNA_02387 0.63 -1.6 2,531,645 + CCNA_02387 0.66 -1.6 2,531,706 + CCNA_02387 0.70 -0.4 2,531,708 + CCNA_02387 0.70 +0.5 2,531,710 + CCNA_02387 0.71 +0.6 2,531,710 + CCNA_02387 0.71 -0.1 2,531,718 - CCNA_02387 0.71 +0.0
Or see this region's nucleotide sequence