Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02371 and CCNA_02372 are separated by 26 nucleotides CCNA_02372 and CCNA_02373 overlap by 29 nucleotides CCNA_02373 and CCNA_02374 overlap by 7 nucleotides
CCNA_02371: CCNA_02371 - tryptophan halogenase superfamily protein, at 2,517,092 to 2,518,606
_02371
CCNA_02372: CCNA_02372 - hypothetical protein, at 2,518,633 to 2,518,776
_02372
CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674
_02373
CCNA_02374: CCNA_02374 - transposase, at 2,519,668 to 2,519,934
_02374
Position (kb)
2518
2519 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2517.689 kb on + strand, within CCNA_02371 at 2517.708 kb on + strand, within CCNA_02371 at 2517.716 kb on - strand at 2517.717 kb on - strand, within CCNA_02371 at 2517.735 kb on - strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.781 kb on - strand, within CCNA_02371 at 2517.781 kb on - strand, within CCNA_02371 at 2517.781 kb on - strand, within CCNA_02371 at 2517.781 kb on - strand, within CCNA_02371 at 2517.820 kb on - strand, within CCNA_02371 at 2517.833 kb on + strand, within CCNA_02371 at 2517.856 kb on + strand, within CCNA_02371 at 2517.856 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.889 kb on - strand, within CCNA_02371 at 2517.914 kb on + strand, within CCNA_02371 at 2517.914 kb on - strand, within CCNA_02371 at 2517.949 kb on - strand, within CCNA_02371 at 2518.024 kb on - strand, within CCNA_02371 at 2518.028 kb on - strand, within CCNA_02371 at 2518.031 kb on - strand, within CCNA_02371 at 2518.060 kb on + strand, within CCNA_02371 at 2518.091 kb on - strand, within CCNA_02371 at 2518.137 kb on - strand, within CCNA_02371 at 2518.142 kb on - strand, within CCNA_02371 at 2518.143 kb on + strand, within CCNA_02371 at 2518.147 kb on - strand, within CCNA_02371 at 2518.148 kb on + strand, within CCNA_02371 at 2518.148 kb on + strand, within CCNA_02371 at 2518.156 kb on - strand, within CCNA_02371 at 2518.185 kb on + strand, within CCNA_02371 at 2518.193 kb on - strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.238 kb on + strand, within CCNA_02371 at 2518.264 kb on + strand, within CCNA_02371 at 2518.267 kb on + strand, within CCNA_02371 at 2518.275 kb on - strand, within CCNA_02371 at 2518.343 kb on - strand, within CCNA_02371 at 2518.343 kb on - strand, within CCNA_02371 at 2518.343 kb on - strand, within CCNA_02371 at 2518.359 kb on + strand, within CCNA_02371 at 2518.377 kb on + strand, within CCNA_02371 at 2518.399 kb on + strand, within CCNA_02371 at 2518.425 kb on - strand, within CCNA_02371 at 2518.434 kb on + strand, within CCNA_02371 at 2518.434 kb on + strand, within CCNA_02371 at 2518.448 kb on - strand, within CCNA_02371 at 2518.502 kb on + strand at 2518.531 kb on - strand at 2518.555 kb on - strand at 2518.595 kb on + strand at 2518.595 kb on + strand at 2518.600 kb on + strand at 2518.603 kb on - strand at 2518.605 kb on + strand at 2518.608 kb on - strand at 2518.641 kb on + strand at 2518.650 kb on - strand, within CCNA_02372 at 2518.678 kb on + strand at 2518.685 kb on + strand, within CCNA_02372 at 2518.702 kb on + strand, within CCNA_02372 at 2518.703 kb on - strand, within CCNA_02372 at 2518.768 kb on - strand at 2518.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,517,689 + CCNA_02371 0.39 -0.4 2,517,708 + CCNA_02371 0.41 +0.1 2,517,716 - +0.9 2,517,717 - CCNA_02371 0.41 -1.6 2,517,735 - CCNA_02371 0.42 +0.2 2,517,750 + CCNA_02371 0.43 -0.9 2,517,750 + CCNA_02371 0.43 +0.5 2,517,773 + CCNA_02371 0.45 -0.4 2,517,773 + CCNA_02371 0.45 -1.0 2,517,773 + CCNA_02371 0.45 -0.8 2,517,773 + CCNA_02371 0.45 -1.0 2,517,773 + CCNA_02371 0.45 +0.1 2,517,781 - CCNA_02371 0.45 -2.3 2,517,781 - CCNA_02371 0.45 +1.9 2,517,781 - CCNA_02371 0.45 +0.9 2,517,781 - CCNA_02371 0.45 -1.0 2,517,820 - CCNA_02371 0.48 -0.7 2,517,833 + CCNA_02371 0.49 -2.4 2,517,856 + CCNA_02371 0.50 +1.9 2,517,856 + CCNA_02371 0.50 +1.9 2,517,863 + CCNA_02371 0.51 -0.4 2,517,863 + CCNA_02371 0.51 +0.8 2,517,863 + CCNA_02371 0.51 -2.1 2,517,863 + CCNA_02371 0.51 -2.1 2,517,863 + CCNA_02371 0.51 -0.4 2,517,871 - CCNA_02371 0.51 +2.2 2,517,871 - CCNA_02371 0.51 -0.5 2,517,889 - CCNA_02371 0.53 +0.7 2,517,914 + CCNA_02371 0.54 -0.1 2,517,914 - CCNA_02371 0.54 +0.5 2,517,949 - CCNA_02371 0.57 +1.1 2,518,024 - CCNA_02371 0.62 +1.9 2,518,028 - CCNA_02371 0.62 -1.0 2,518,031 - CCNA_02371 0.62 +0.0 2,518,060 + CCNA_02371 0.64 -1.4 2,518,091 - CCNA_02371 0.66 +0.2 2,518,137 - CCNA_02371 0.69 -1.8 2,518,142 - CCNA_02371 0.69 -1.4 2,518,143 + CCNA_02371 0.69 +1.5 2,518,147 - CCNA_02371 0.70 -1.9 2,518,148 + CCNA_02371 0.70 -2.4 2,518,148 + CCNA_02371 0.70 -0.7 2,518,156 - CCNA_02371 0.70 -2.7 2,518,185 + CCNA_02371 0.72 +2.5 2,518,193 - CCNA_02371 0.73 -1.4 2,518,226 + CCNA_02371 0.75 -1.9 2,518,226 + CCNA_02371 0.75 -0.2 2,518,234 - CCNA_02371 0.75 -0.8 2,518,234 - CCNA_02371 0.75 -0.3 2,518,234 - CCNA_02371 0.75 -1.0 2,518,238 + CCNA_02371 0.76 -1.5 2,518,264 + CCNA_02371 0.77 -0.6 2,518,267 + CCNA_02371 0.78 -0.7 2,518,275 - CCNA_02371 0.78 -1.5 2,518,343 - CCNA_02371 0.83 -0.4 2,518,343 - CCNA_02371 0.83 -1.1 2,518,343 - CCNA_02371 0.83 -1.4 2,518,359 + CCNA_02371 0.84 -0.6 2,518,377 + CCNA_02371 0.85 +0.7 2,518,399 + CCNA_02371 0.86 -0.5 2,518,425 - CCNA_02371 0.88 -1.7 2,518,434 + CCNA_02371 0.89 -0.2 2,518,434 + CCNA_02371 0.89 +2.6 2,518,448 - CCNA_02371 0.90 +1.0 2,518,502 + +1.3 2,518,531 - +0.0 2,518,555 - -0.3 2,518,595 + -2.0 2,518,595 + -0.1 2,518,600 + -1.2 2,518,603 - -0.4 2,518,605 + -0.5 2,518,608 - +1.0 2,518,641 + -1.2 2,518,650 - CCNA_02372 0.12 -1.3 2,518,678 + +0.7 2,518,685 + CCNA_02372 0.36 -1.4 2,518,702 + CCNA_02372 0.48 -2.1 2,518,703 - CCNA_02372 0.49 -0.3 2,518,768 - -2.1 2,518,768 - -1.2
Or see this region's nucleotide sequence