Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02306

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02304 and CCNA_02305 are separated by 102 nucleotidesCCNA_02305 and CCNA_02306 are separated by 45 nucleotidesCCNA_02306 and CCNA_02307 are separated by 6 nucleotides CCNA_02304: CCNA_02304 - hypothetical protein, at 2,449,310 to 2,450,335 _02304 CCNA_02305: CCNA_02305 - chorismate mutase-family protein, at 2,450,438 to 2,451,238 _02305 CCNA_02306: CCNA_02306 - histidinol-phosphate aminotransferase, at 2,451,284 to 2,452,405 _02306 CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350 _02307 Position (kb) 2451 2452 2453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2450.293 kb on + strandat 2450.311 kb on - strandat 2450.325 kb on + strandat 2450.488 kb on - strandat 2450.540 kb on + strand, within CCNA_02305at 2450.540 kb on + strand, within CCNA_02305at 2450.540 kb on + strand, within CCNA_02305at 2450.540 kb on + strand, within CCNA_02305at 2450.548 kb on - strand, within CCNA_02305at 2450.574 kb on + strand, within CCNA_02305at 2450.597 kb on - strand, within CCNA_02305at 2450.597 kb on - strand, within CCNA_02305at 2450.597 kb on - strand, within CCNA_02305at 2450.630 kb on + strand, within CCNA_02305at 2450.633 kb on + strand, within CCNA_02305at 2450.655 kb on - strand, within CCNA_02305at 2450.655 kb on - strand, within CCNA_02305at 2450.701 kb on - strand, within CCNA_02305at 2450.707 kb on - strand, within CCNA_02305at 2450.724 kb on + strand, within CCNA_02305at 2450.735 kb on + strand, within CCNA_02305at 2450.813 kb on + strand, within CCNA_02305at 2450.820 kb on + strand, within CCNA_02305at 2450.821 kb on - strand, within CCNA_02305at 2450.876 kb on - strand, within CCNA_02305at 2450.883 kb on + strand, within CCNA_02305at 2450.883 kb on + strand, within CCNA_02305at 2450.883 kb on + strand, within CCNA_02305at 2450.908 kb on + strand, within CCNA_02305at 2450.919 kb on + strand, within CCNA_02305at 2450.919 kb on + strand, within CCNA_02305at 2450.925 kb on + strand, within CCNA_02305at 2450.927 kb on - strand, within CCNA_02305at 2450.942 kb on + strand, within CCNA_02305at 2450.950 kb on - strand, within CCNA_02305at 2450.989 kb on + strand, within CCNA_02305at 2451.003 kb on - strand, within CCNA_02305at 2451.140 kb on + strand, within CCNA_02305at 2451.165 kb on + strandat 2451.202 kb on + strandat 2451.213 kb on - strandat 2451.216 kb on + strandat 2451.260 kb on - strandat 2451.279 kb on - strandat 2451.334 kb on + strandat 2451.334 kb on + strandat 2451.336 kb on - strandat 2451.342 kb on - strandat 2451.349 kb on + strandat 2451.373 kb on + strandat 2451.373 kb on + strandat 2451.373 kb on + strandat 2451.373 kb on + strandat 2451.381 kb on - strandat 2451.381 kb on - strandat 2451.381 kb on - strandat 2451.381 kb on - strandat 2451.386 kb on + strandat 2451.502 kb on + strand, within CCNA_02306at 2451.502 kb on + strand, within CCNA_02306at 2451.578 kb on + strand, within CCNA_02306at 2451.598 kb on + strand, within CCNA_02306at 2451.604 kb on + strand, within CCNA_02306at 2451.609 kb on + strand, within CCNA_02306at 2451.627 kb on + strand, within CCNA_02306at 2451.656 kb on + strand, within CCNA_02306at 2451.689 kb on - strand, within CCNA_02306at 2451.710 kb on + strand, within CCNA_02306at 2451.737 kb on + strand, within CCNA_02306at 2451.745 kb on - strand, within CCNA_02306at 2451.745 kb on - strand, within CCNA_02306at 2451.764 kb on + strand, within CCNA_02306at 2451.764 kb on + strand, within CCNA_02306at 2451.772 kb on - strand, within CCNA_02306at 2451.797 kb on + strand, within CCNA_02306at 2451.861 kb on + strand, within CCNA_02306at 2451.874 kb on - strand, within CCNA_02306at 2451.889 kb on + strand, within CCNA_02306at 2451.899 kb on + strand, within CCNA_02306at 2451.907 kb on + strand, within CCNA_02306at 2451.918 kb on + strand, within CCNA_02306at 2451.918 kb on + strand, within CCNA_02306at 2451.926 kb on - strand, within CCNA_02306at 2451.926 kb on - strand, within CCNA_02306at 2452.001 kb on + strand, within CCNA_02306at 2452.001 kb on + strand, within CCNA_02306at 2452.001 kb on + strand, within CCNA_02306at 2452.009 kb on - strand, within CCNA_02306at 2452.009 kb on - strand, within CCNA_02306at 2452.073 kb on - strand, within CCNA_02306at 2452.192 kb on + strand, within CCNA_02306at 2452.192 kb on + strand, within CCNA_02306at 2452.243 kb on + strand, within CCNA_02306at 2452.243 kb on + strand, within CCNA_02306at 2452.251 kb on - strand, within CCNA_02306at 2452.251 kb on - strand, within CCNA_02306at 2452.254 kb on + strand, within CCNA_02306at 2452.293 kb on - strandat 2452.299 kb on + strandat 2452.319 kb on - strandat 2452.319 kb on - strandat 2452.347 kb on + strandat 2452.355 kb on + strandat 2452.363 kb on - strandat 2452.363 kb on - strandat 2452.363 kb on - strandat 2452.390 kb on + strandat 2452.398 kb on - strandat 2452.398 kb on - strandat 2452.574 kb on + strand, within CCNA_02307at 2452.575 kb on - strand, within CCNA_02307at 2452.620 kb on + strand, within CCNA_02307at 2452.651 kb on - strand, within CCNA_02307at 2452.658 kb on + strand, within CCNA_02307at 2452.708 kb on - strand, within CCNA_02307at 2452.726 kb on + strand, within CCNA_02307at 2452.795 kb on + strand, within CCNA_02307at 2452.805 kb on + strand, within CCNA_02307at 2452.859 kb on + strand, within CCNA_02307at 2452.907 kb on + strand, within CCNA_02307at 2452.946 kb on - strand, within CCNA_02307at 2452.967 kb on + strand, within CCNA_02307at 2453.009 kb on - strand, within CCNA_02307at 2453.032 kb on - strand, within CCNA_02307at 2453.069 kb on + strand, within CCNA_02307at 2453.092 kb on - strand, within CCNA_02307at 2453.168 kb on + strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.176 kb on - strand, within CCNA_02307at 2453.214 kb on - strand, within CCNA_02307at 2453.255 kb on + strand, within CCNA_02307at 2453.255 kb on + strand, within CCNA_02307at 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.300 kb on + strandat 2453.308 kb on - strandat 2453.308 kb on - strandat 2453.344 kb on + strandat 2453.344 kb on + strandat 2453.344 kb on + strandat 2453.345 kb on + strandat 2453.345 kb on + strandat 2453.345 kb on + strandat 2453.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,450,293 + -0.4
2,450,311 - -1.9
2,450,325 + +0.8
2,450,488 - -0.3
2,450,540 + CCNA_02305 0.13 -0.4
2,450,540 + CCNA_02305 0.13 +0.9
2,450,540 + CCNA_02305 0.13 +1.4
2,450,540 + CCNA_02305 0.13 -1.7
2,450,548 - CCNA_02305 0.14 +0.6
2,450,574 + CCNA_02305 0.17 -2.3
2,450,597 - CCNA_02305 0.20 +0.4
2,450,597 - CCNA_02305 0.20 -1.0
2,450,597 - CCNA_02305 0.20 +1.0
2,450,630 + CCNA_02305 0.24 -0.1
2,450,633 + CCNA_02305 0.24 -0.8
2,450,655 - CCNA_02305 0.27 -0.7
2,450,655 - CCNA_02305 0.27 -0.3
2,450,701 - CCNA_02305 0.33 -1.3
2,450,707 - CCNA_02305 0.34 -0.6
2,450,724 + CCNA_02305 0.36 -0.2
2,450,735 + CCNA_02305 0.37 +0.3
2,450,813 + CCNA_02305 0.47 -0.0
2,450,820 + CCNA_02305 0.48 -0.8
2,450,821 - CCNA_02305 0.48 +1.9
2,450,876 - CCNA_02305 0.55 +0.7
2,450,883 + CCNA_02305 0.56 -0.3
2,450,883 + CCNA_02305 0.56 +0.3
2,450,883 + CCNA_02305 0.56 +0.2
2,450,908 + CCNA_02305 0.59 -0.3
2,450,919 + CCNA_02305 0.60 -1.1
2,450,919 + CCNA_02305 0.60 -1.2
2,450,925 + CCNA_02305 0.61 +0.4
2,450,927 - CCNA_02305 0.61 -2.1
2,450,942 + CCNA_02305 0.63 -1.6
2,450,950 - CCNA_02305 0.64 -1.0
2,450,989 + CCNA_02305 0.69 -0.7
2,451,003 - CCNA_02305 0.71 -1.3
2,451,140 + CCNA_02305 0.88 +0.6
2,451,165 + -0.2
2,451,202 + -1.3
2,451,213 - -2.1
2,451,216 + -1.1
2,451,260 - -0.1
2,451,279 - +0.4
2,451,334 + -1.1
2,451,334 + -1.2
2,451,336 - +0.8
2,451,342 - -1.1
2,451,349 + -2.3
2,451,373 + -1.6
2,451,373 + -2.8
2,451,373 + -0.9
2,451,373 + +1.4
2,451,381 - -0.7
2,451,381 - +0.1
2,451,381 - +0.3
2,451,381 - -0.1
2,451,386 + -0.2
2,451,502 + CCNA_02306 0.19 -0.1
2,451,502 + CCNA_02306 0.19 +0.4
2,451,578 + CCNA_02306 0.26 -1.2
2,451,598 + CCNA_02306 0.28 -1.2
2,451,604 + CCNA_02306 0.29 -1.2
2,451,609 + CCNA_02306 0.29 -0.2
2,451,627 + CCNA_02306 0.31 +0.2
2,451,656 + CCNA_02306 0.33 -1.2
2,451,689 - CCNA_02306 0.36 -1.9
2,451,710 + CCNA_02306 0.38 -2.2
2,451,737 + CCNA_02306 0.40 -0.8
2,451,745 - CCNA_02306 0.41 -1.0
2,451,745 - CCNA_02306 0.41 -1.8
2,451,764 + CCNA_02306 0.43 -0.8
2,451,764 + CCNA_02306 0.43 +2.4
2,451,772 - CCNA_02306 0.43 -1.8
2,451,797 + CCNA_02306 0.46 +1.1
2,451,861 + CCNA_02306 0.51 -1.0
2,451,874 - CCNA_02306 0.53 +0.8
2,451,889 + CCNA_02306 0.54 -3.2
2,451,899 + CCNA_02306 0.55 -2.3
2,451,907 + CCNA_02306 0.56 -2.6
2,451,918 + CCNA_02306 0.57 -0.1
2,451,918 + CCNA_02306 0.57 -0.5
2,451,926 - CCNA_02306 0.57 -0.1
2,451,926 - CCNA_02306 0.57 -0.2
2,452,001 + CCNA_02306 0.64 -0.1
2,452,001 + CCNA_02306 0.64 -0.3
2,452,001 + CCNA_02306 0.64 -1.4
2,452,009 - CCNA_02306 0.65 -1.8
2,452,009 - CCNA_02306 0.65 -2.5
2,452,073 - CCNA_02306 0.70 -1.6
2,452,192 + CCNA_02306 0.81 -1.4
2,452,192 + CCNA_02306 0.81 -1.1
2,452,243 + CCNA_02306 0.85 +2.2
2,452,243 + CCNA_02306 0.85 -0.3
2,452,251 - CCNA_02306 0.86 -1.0
2,452,251 - CCNA_02306 0.86 -0.8
2,452,254 + CCNA_02306 0.86 -0.6
2,452,293 - -0.1
2,452,299 + -0.2
2,452,319 - -0.6
2,452,319 - -2.3
2,452,347 + -2.1
2,452,355 + -0.8
2,452,363 - -0.4
2,452,363 - -0.8
2,452,363 - -2.4
2,452,390 + +0.6
2,452,398 - -0.4
2,452,398 - -1.0
2,452,574 + CCNA_02307 0.17 -0.3
2,452,575 - CCNA_02307 0.17 -1.5
2,452,620 + CCNA_02307 0.22 +0.1
2,452,651 - CCNA_02307 0.25 +0.7
2,452,658 + CCNA_02307 0.26 +2.0
2,452,708 - CCNA_02307 0.32 +0.5
2,452,726 + CCNA_02307 0.33 +1.1
2,452,795 + CCNA_02307 0.41 -0.9
2,452,805 + CCNA_02307 0.42 -0.3
2,452,859 + CCNA_02307 0.48 +1.5
2,452,907 + CCNA_02307 0.53 -0.3
2,452,946 - CCNA_02307 0.57 -1.6
2,452,967 + CCNA_02307 0.59 -0.7
2,453,009 - CCNA_02307 0.64 -0.6
2,453,032 - CCNA_02307 0.66 -1.6
2,453,069 + CCNA_02307 0.70 +0.5
2,453,092 - CCNA_02307 0.72 +2.1
2,453,168 + CCNA_02307 0.81 +0.4
2,453,176 - CCNA_02307 0.81 -0.1
2,453,176 - CCNA_02307 0.81 +1.4
2,453,176 - CCNA_02307 0.81 -0.0
2,453,176 - CCNA_02307 0.81 +1.2
2,453,176 - CCNA_02307 0.81 -0.6
2,453,214 - CCNA_02307 0.85 -1.2
2,453,255 + CCNA_02307 0.90 +0.3
2,453,255 + CCNA_02307 0.90 -0.4
2,453,300 + +0.4
2,453,300 + +0.3
2,453,300 + +0.4
2,453,300 + +1.3
2,453,300 + -0.3
2,453,300 + +0.5
2,453,300 + +1.7
2,453,308 - +0.7
2,453,308 - +1.3
2,453,344 + +1.8
2,453,344 + +0.6
2,453,344 + -0.1
2,453,345 + -0.1
2,453,345 + -0.4
2,453,345 + +0.5
2,453,352 - -1.3

Or see this region's nucleotide sequence