Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02304 and CCNA_02305 are separated by 102 nucleotides CCNA_02305 and CCNA_02306 are separated by 45 nucleotides CCNA_02306 and CCNA_02307 are separated by 6 nucleotides
CCNA_02304: CCNA_02304 - hypothetical protein, at 2,449,310 to 2,450,335
_02304
CCNA_02305: CCNA_02305 - chorismate mutase-family protein, at 2,450,438 to 2,451,238
_02305
CCNA_02306: CCNA_02306 - histidinol-phosphate aminotransferase, at 2,451,284 to 2,452,405
_02306
CCNA_02307: CCNA_02307 - cyclohexadienyl dehydrogenase, at 2,452,412 to 2,453,350
_02307
Position (kb)
2451
2452
2453 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2450.293 kb on + strand at 2450.311 kb on - strand at 2450.325 kb on + strand at 2450.488 kb on - strand at 2450.540 kb on + strand, within CCNA_02305 at 2450.540 kb on + strand, within CCNA_02305 at 2450.540 kb on + strand, within CCNA_02305 at 2450.540 kb on + strand, within CCNA_02305 at 2450.548 kb on - strand, within CCNA_02305 at 2450.574 kb on + strand, within CCNA_02305 at 2450.597 kb on - strand, within CCNA_02305 at 2450.597 kb on - strand, within CCNA_02305 at 2450.597 kb on - strand, within CCNA_02305 at 2450.630 kb on + strand, within CCNA_02305 at 2450.633 kb on + strand, within CCNA_02305 at 2450.655 kb on - strand, within CCNA_02305 at 2450.655 kb on - strand, within CCNA_02305 at 2450.701 kb on - strand, within CCNA_02305 at 2450.707 kb on - strand, within CCNA_02305 at 2450.724 kb on + strand, within CCNA_02305 at 2450.735 kb on + strand, within CCNA_02305 at 2450.813 kb on + strand, within CCNA_02305 at 2450.820 kb on + strand, within CCNA_02305 at 2450.821 kb on - strand, within CCNA_02305 at 2450.876 kb on - strand, within CCNA_02305 at 2450.883 kb on + strand, within CCNA_02305 at 2450.883 kb on + strand, within CCNA_02305 at 2450.883 kb on + strand, within CCNA_02305 at 2450.908 kb on + strand, within CCNA_02305 at 2450.919 kb on + strand, within CCNA_02305 at 2450.919 kb on + strand, within CCNA_02305 at 2450.925 kb on + strand, within CCNA_02305 at 2450.927 kb on - strand, within CCNA_02305 at 2450.942 kb on + strand, within CCNA_02305 at 2450.950 kb on - strand, within CCNA_02305 at 2450.989 kb on + strand, within CCNA_02305 at 2451.003 kb on - strand, within CCNA_02305 at 2451.140 kb on + strand, within CCNA_02305 at 2451.165 kb on + strand at 2451.202 kb on + strand at 2451.213 kb on - strand at 2451.216 kb on + strand at 2451.260 kb on - strand at 2451.279 kb on - strand at 2451.334 kb on + strand at 2451.334 kb on + strand at 2451.336 kb on - strand at 2451.342 kb on - strand at 2451.349 kb on + strand at 2451.373 kb on + strand at 2451.373 kb on + strand at 2451.373 kb on + strand at 2451.373 kb on + strand at 2451.381 kb on - strand at 2451.381 kb on - strand at 2451.381 kb on - strand at 2451.381 kb on - strand at 2451.386 kb on + strand at 2451.502 kb on + strand, within CCNA_02306 at 2451.502 kb on + strand, within CCNA_02306 at 2451.578 kb on + strand, within CCNA_02306 at 2451.598 kb on + strand, within CCNA_02306 at 2451.604 kb on + strand, within CCNA_02306 at 2451.609 kb on + strand, within CCNA_02306 at 2451.627 kb on + strand, within CCNA_02306 at 2451.656 kb on + strand, within CCNA_02306 at 2451.689 kb on - strand, within CCNA_02306 at 2451.710 kb on + strand, within CCNA_02306 at 2451.737 kb on + strand, within CCNA_02306 at 2451.745 kb on - strand, within CCNA_02306 at 2451.745 kb on - strand, within CCNA_02306 at 2451.764 kb on + strand, within CCNA_02306 at 2451.764 kb on + strand, within CCNA_02306 at 2451.772 kb on - strand, within CCNA_02306 at 2451.797 kb on + strand, within CCNA_02306 at 2451.861 kb on + strand, within CCNA_02306 at 2451.874 kb on - strand, within CCNA_02306 at 2451.889 kb on + strand, within CCNA_02306 at 2451.899 kb on + strand, within CCNA_02306 at 2451.907 kb on + strand, within CCNA_02306 at 2451.918 kb on + strand, within CCNA_02306 at 2451.918 kb on + strand, within CCNA_02306 at 2451.926 kb on - strand, within CCNA_02306 at 2451.926 kb on - strand, within CCNA_02306 at 2452.001 kb on + strand, within CCNA_02306 at 2452.001 kb on + strand, within CCNA_02306 at 2452.001 kb on + strand, within CCNA_02306 at 2452.009 kb on - strand, within CCNA_02306 at 2452.009 kb on - strand, within CCNA_02306 at 2452.073 kb on - strand, within CCNA_02306 at 2452.192 kb on + strand, within CCNA_02306 at 2452.192 kb on + strand, within CCNA_02306 at 2452.243 kb on + strand, within CCNA_02306 at 2452.243 kb on + strand, within CCNA_02306 at 2452.251 kb on - strand, within CCNA_02306 at 2452.251 kb on - strand, within CCNA_02306 at 2452.254 kb on + strand, within CCNA_02306 at 2452.293 kb on - strand at 2452.299 kb on + strand at 2452.319 kb on - strand at 2452.319 kb on - strand at 2452.347 kb on + strand at 2452.355 kb on + strand at 2452.363 kb on - strand at 2452.363 kb on - strand at 2452.363 kb on - strand at 2452.390 kb on + strand at 2452.398 kb on - strand at 2452.398 kb on - strand at 2452.574 kb on + strand, within CCNA_02307 at 2452.575 kb on - strand, within CCNA_02307 at 2452.620 kb on + strand, within CCNA_02307 at 2452.651 kb on - strand, within CCNA_02307 at 2452.658 kb on + strand, within CCNA_02307 at 2452.708 kb on - strand, within CCNA_02307 at 2452.726 kb on + strand, within CCNA_02307 at 2452.795 kb on + strand, within CCNA_02307 at 2452.805 kb on + strand, within CCNA_02307 at 2452.859 kb on + strand, within CCNA_02307 at 2452.907 kb on + strand, within CCNA_02307 at 2452.946 kb on - strand, within CCNA_02307 at 2452.967 kb on + strand, within CCNA_02307 at 2453.009 kb on - strand, within CCNA_02307 at 2453.032 kb on - strand, within CCNA_02307 at 2453.069 kb on + strand, within CCNA_02307 at 2453.092 kb on - strand, within CCNA_02307 at 2453.168 kb on + strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.176 kb on - strand, within CCNA_02307 at 2453.214 kb on - strand, within CCNA_02307 at 2453.255 kb on + strand, within CCNA_02307 at 2453.255 kb on + strand, within CCNA_02307 at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.300 kb on + strand at 2453.308 kb on - strand at 2453.308 kb on - strand at 2453.344 kb on + strand at 2453.344 kb on + strand at 2453.344 kb on + strand at 2453.345 kb on + strand at 2453.345 kb on + strand at 2453.345 kb on + strand at 2453.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,450,293 + -0.4 2,450,311 - -1.9 2,450,325 + +0.8 2,450,488 - -0.3 2,450,540 + CCNA_02305 0.13 -0.4 2,450,540 + CCNA_02305 0.13 +0.9 2,450,540 + CCNA_02305 0.13 +1.4 2,450,540 + CCNA_02305 0.13 -1.7 2,450,548 - CCNA_02305 0.14 +0.6 2,450,574 + CCNA_02305 0.17 -2.3 2,450,597 - CCNA_02305 0.20 +0.4 2,450,597 - CCNA_02305 0.20 -1.0 2,450,597 - CCNA_02305 0.20 +1.0 2,450,630 + CCNA_02305 0.24 -0.1 2,450,633 + CCNA_02305 0.24 -0.8 2,450,655 - CCNA_02305 0.27 -0.7 2,450,655 - CCNA_02305 0.27 -0.3 2,450,701 - CCNA_02305 0.33 -1.3 2,450,707 - CCNA_02305 0.34 -0.6 2,450,724 + CCNA_02305 0.36 -0.2 2,450,735 + CCNA_02305 0.37 +0.3 2,450,813 + CCNA_02305 0.47 -0.0 2,450,820 + CCNA_02305 0.48 -0.8 2,450,821 - CCNA_02305 0.48 +1.9 2,450,876 - CCNA_02305 0.55 +0.7 2,450,883 + CCNA_02305 0.56 -0.3 2,450,883 + CCNA_02305 0.56 +0.3 2,450,883 + CCNA_02305 0.56 +0.2 2,450,908 + CCNA_02305 0.59 -0.3 2,450,919 + CCNA_02305 0.60 -1.1 2,450,919 + CCNA_02305 0.60 -1.2 2,450,925 + CCNA_02305 0.61 +0.4 2,450,927 - CCNA_02305 0.61 -2.1 2,450,942 + CCNA_02305 0.63 -1.6 2,450,950 - CCNA_02305 0.64 -1.0 2,450,989 + CCNA_02305 0.69 -0.7 2,451,003 - CCNA_02305 0.71 -1.3 2,451,140 + CCNA_02305 0.88 +0.6 2,451,165 + -0.2 2,451,202 + -1.3 2,451,213 - -2.1 2,451,216 + -1.1 2,451,260 - -0.1 2,451,279 - +0.4 2,451,334 + -1.1 2,451,334 + -1.2 2,451,336 - +0.8 2,451,342 - -1.1 2,451,349 + -2.3 2,451,373 + -1.6 2,451,373 + -2.8 2,451,373 + -0.9 2,451,373 + +1.4 2,451,381 - -0.7 2,451,381 - +0.1 2,451,381 - +0.3 2,451,381 - -0.1 2,451,386 + -0.2 2,451,502 + CCNA_02306 0.19 -0.1 2,451,502 + CCNA_02306 0.19 +0.4 2,451,578 + CCNA_02306 0.26 -1.2 2,451,598 + CCNA_02306 0.28 -1.2 2,451,604 + CCNA_02306 0.29 -1.2 2,451,609 + CCNA_02306 0.29 -0.2 2,451,627 + CCNA_02306 0.31 +0.2 2,451,656 + CCNA_02306 0.33 -1.2 2,451,689 - CCNA_02306 0.36 -1.9 2,451,710 + CCNA_02306 0.38 -2.2 2,451,737 + CCNA_02306 0.40 -0.8 2,451,745 - CCNA_02306 0.41 -1.0 2,451,745 - CCNA_02306 0.41 -1.8 2,451,764 + CCNA_02306 0.43 -0.8 2,451,764 + CCNA_02306 0.43 +2.4 2,451,772 - CCNA_02306 0.43 -1.8 2,451,797 + CCNA_02306 0.46 +1.1 2,451,861 + CCNA_02306 0.51 -1.0 2,451,874 - CCNA_02306 0.53 +0.8 2,451,889 + CCNA_02306 0.54 -3.2 2,451,899 + CCNA_02306 0.55 -2.3 2,451,907 + CCNA_02306 0.56 -2.6 2,451,918 + CCNA_02306 0.57 -0.1 2,451,918 + CCNA_02306 0.57 -0.5 2,451,926 - CCNA_02306 0.57 -0.1 2,451,926 - CCNA_02306 0.57 -0.2 2,452,001 + CCNA_02306 0.64 -0.1 2,452,001 + CCNA_02306 0.64 -0.3 2,452,001 + CCNA_02306 0.64 -1.4 2,452,009 - CCNA_02306 0.65 -1.8 2,452,009 - CCNA_02306 0.65 -2.5 2,452,073 - CCNA_02306 0.70 -1.6 2,452,192 + CCNA_02306 0.81 -1.4 2,452,192 + CCNA_02306 0.81 -1.1 2,452,243 + CCNA_02306 0.85 +2.2 2,452,243 + CCNA_02306 0.85 -0.3 2,452,251 - CCNA_02306 0.86 -1.0 2,452,251 - CCNA_02306 0.86 -0.8 2,452,254 + CCNA_02306 0.86 -0.6 2,452,293 - -0.1 2,452,299 + -0.2 2,452,319 - -0.6 2,452,319 - -2.3 2,452,347 + -2.1 2,452,355 + -0.8 2,452,363 - -0.4 2,452,363 - -0.8 2,452,363 - -2.4 2,452,390 + +0.6 2,452,398 - -0.4 2,452,398 - -1.0 2,452,574 + CCNA_02307 0.17 -0.3 2,452,575 - CCNA_02307 0.17 -1.5 2,452,620 + CCNA_02307 0.22 +0.1 2,452,651 - CCNA_02307 0.25 +0.7 2,452,658 + CCNA_02307 0.26 +2.0 2,452,708 - CCNA_02307 0.32 +0.5 2,452,726 + CCNA_02307 0.33 +1.1 2,452,795 + CCNA_02307 0.41 -0.9 2,452,805 + CCNA_02307 0.42 -0.3 2,452,859 + CCNA_02307 0.48 +1.5 2,452,907 + CCNA_02307 0.53 -0.3 2,452,946 - CCNA_02307 0.57 -1.6 2,452,967 + CCNA_02307 0.59 -0.7 2,453,009 - CCNA_02307 0.64 -0.6 2,453,032 - CCNA_02307 0.66 -1.6 2,453,069 + CCNA_02307 0.70 +0.5 2,453,092 - CCNA_02307 0.72 +2.1 2,453,168 + CCNA_02307 0.81 +0.4 2,453,176 - CCNA_02307 0.81 -0.1 2,453,176 - CCNA_02307 0.81 +1.4 2,453,176 - CCNA_02307 0.81 -0.0 2,453,176 - CCNA_02307 0.81 +1.2 2,453,176 - CCNA_02307 0.81 -0.6 2,453,214 - CCNA_02307 0.85 -1.2 2,453,255 + CCNA_02307 0.90 +0.3 2,453,255 + CCNA_02307 0.90 -0.4 2,453,300 + +0.4 2,453,300 + +0.3 2,453,300 + +0.4 2,453,300 + +1.3 2,453,300 + -0.3 2,453,300 + +0.5 2,453,300 + +1.7 2,453,308 - +0.7 2,453,308 - +1.3 2,453,344 + +1.8 2,453,344 + +0.6 2,453,344 + -0.1 2,453,345 + -0.1 2,453,345 + -0.4 2,453,345 + +0.5 2,453,352 - -1.3
Or see this region's nucleotide sequence