Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02216

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02215 and CCNA_02216 are separated by 6 nucleotidesCCNA_02216 and CCNA_02217 are separated by 121 nucleotidesCCNA_02217 and CCNA_02218 are separated by 98 nucleotides CCNA_02215: CCNA_02215 - acyl-CoA dehydrogenase, at 2,362,451 to 2,363,662 _02215 CCNA_02216: CCNA_02216 - ABM family monooxygenase, at 2,363,669 to 2,363,959 _02216 CCNA_02217: CCNA_02217 - hypothetical protein, at 2,364,081 to 2,364,383 _02217 CCNA_02218: CCNA_02218 - DnaJ-like protein djlA, at 2,364,482 to 2,365,177 _02218 Position (kb) 2363 2364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2362.677 kb on - strand, within CCNA_02215at 2362.677 kb on - strand, within CCNA_02215at 2362.677 kb on - strand, within CCNA_02215at 2362.729 kb on + strand, within CCNA_02215at 2362.815 kb on + strand, within CCNA_02215at 2362.852 kb on - strand, within CCNA_02215at 2362.854 kb on + strand, within CCNA_02215at 2362.860 kb on + strand, within CCNA_02215at 2362.910 kb on - strand, within CCNA_02215at 2362.910 kb on - strand, within CCNA_02215at 2362.947 kb on + strand, within CCNA_02215at 2363.003 kb on + strand, within CCNA_02215at 2363.039 kb on + strand, within CCNA_02215at 2363.063 kb on - strand, within CCNA_02215at 2363.081 kb on - strand, within CCNA_02215at 2363.168 kb on + strand, within CCNA_02215at 2363.168 kb on + strand, within CCNA_02215at 2363.173 kb on + strand, within CCNA_02215at 2363.176 kb on - strand, within CCNA_02215at 2363.176 kb on - strand, within CCNA_02215at 2363.186 kb on - strand, within CCNA_02215at 2363.224 kb on + strand, within CCNA_02215at 2363.234 kb on - strand, within CCNA_02215at 2363.243 kb on + strand, within CCNA_02215at 2363.243 kb on + strand, within CCNA_02215at 2363.251 kb on - strand, within CCNA_02215at 2363.271 kb on + strand, within CCNA_02215at 2363.335 kb on + strandat 2363.343 kb on - strand, within CCNA_02215at 2363.380 kb on - strand, within CCNA_02215at 2363.380 kb on - strand, within CCNA_02215at 2363.386 kb on + strand, within CCNA_02215at 2363.483 kb on - strand, within CCNA_02215at 2363.483 kb on - strand, within CCNA_02215at 2363.488 kb on - strand, within CCNA_02215at 2363.490 kb on + strand, within CCNA_02215at 2363.503 kb on - strand, within CCNA_02215at 2363.530 kb on + strand, within CCNA_02215at 2363.537 kb on - strand, within CCNA_02215at 2363.538 kb on - strand, within CCNA_02215at 2363.543 kb on - strandat 2363.561 kb on - strandat 2363.589 kb on - strandat 2363.625 kb on - strandat 2363.631 kb on - strandat 2363.635 kb on + strandat 2363.636 kb on + strandat 2363.669 kb on + strandat 2363.669 kb on + strandat 2363.669 kb on + strandat 2363.671 kb on + strandat 2363.677 kb on - strandat 2363.677 kb on - strandat 2363.679 kb on + strandat 2363.759 kb on + strand, within CCNA_02216at 2363.767 kb on - strand, within CCNA_02216at 2363.787 kb on + strand, within CCNA_02216at 2363.795 kb on + strand, within CCNA_02216at 2363.831 kb on - strand, within CCNA_02216at 2363.850 kb on + strand, within CCNA_02216at 2363.858 kb on - strand, within CCNA_02216at 2363.876 kb on - strand, within CCNA_02216at 2363.916 kb on + strand, within CCNA_02216at 2363.940 kb on - strandat 2364.000 kb on - strandat 2364.066 kb on - strandat 2364.076 kb on - strandat 2364.077 kb on + strandat 2364.079 kb on + strandat 2364.087 kb on - strandat 2364.087 kb on - strandat 2364.087 kb on - strandat 2364.087 kb on - strandat 2364.099 kb on + strandat 2364.141 kb on + strand, within CCNA_02217at 2364.149 kb on - strand, within CCNA_02217at 2364.276 kb on + strand, within CCNA_02217at 2364.334 kb on + strand, within CCNA_02217at 2364.479 kb on + strandat 2364.487 kb on - strandat 2364.535 kb on + strandat 2364.555 kb on + strand, within CCNA_02218at 2364.563 kb on - strand, within CCNA_02218at 2364.563 kb on - strand, within CCNA_02218at 2364.563 kb on - strand, within CCNA_02218at 2364.611 kb on + strand, within CCNA_02218at 2364.629 kb on - strand, within CCNA_02218at 2364.629 kb on - strand, within CCNA_02218at 2364.634 kb on - strand, within CCNA_02218at 2364.634 kb on - strand, within CCNA_02218at 2364.657 kb on - strand, within CCNA_02218at 2364.659 kb on + strand, within CCNA_02218at 2364.689 kb on - strand, within CCNA_02218at 2364.689 kb on - strand, within CCNA_02218at 2364.690 kb on - strand, within CCNA_02218at 2364.691 kb on - strand, within CCNA_02218at 2364.729 kb on - strand, within CCNA_02218at 2364.729 kb on - strand, within CCNA_02218at 2364.736 kb on + strand, within CCNA_02218at 2364.831 kb on + strand, within CCNA_02218at 2364.831 kb on + strand, within CCNA_02218at 2364.873 kb on - strand, within CCNA_02218at 2364.873 kb on - strand, within CCNA_02218

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,362,677 - CCNA_02215 0.19 -0.7
2,362,677 - CCNA_02215 0.19 -0.7
2,362,677 - CCNA_02215 0.19 +0.7
2,362,729 + CCNA_02215 0.23 -0.1
2,362,815 + CCNA_02215 0.30 -1.0
2,362,852 - CCNA_02215 0.33 -0.8
2,362,854 + CCNA_02215 0.33 +0.6
2,362,860 + CCNA_02215 0.34 -0.5
2,362,910 - CCNA_02215 0.38 +1.0
2,362,910 - CCNA_02215 0.38 +0.7
2,362,947 + CCNA_02215 0.41 +0.2
2,363,003 + CCNA_02215 0.46 -0.5
2,363,039 + CCNA_02215 0.49 -1.9
2,363,063 - CCNA_02215 0.50 -0.7
2,363,081 - CCNA_02215 0.52 +0.0
2,363,168 + CCNA_02215 0.59 +0.2
2,363,168 + CCNA_02215 0.59 +0.7
2,363,173 + CCNA_02215 0.60 -1.0
2,363,176 - CCNA_02215 0.60 +0.4
2,363,176 - CCNA_02215 0.60 -1.5
2,363,186 - CCNA_02215 0.61 +0.2
2,363,224 + CCNA_02215 0.64 -1.3
2,363,234 - CCNA_02215 0.65 +0.8
2,363,243 + CCNA_02215 0.65 -0.1
2,363,243 + CCNA_02215 0.65 -0.3
2,363,251 - CCNA_02215 0.66 +0.5
2,363,271 + CCNA_02215 0.68 +0.0
2,363,335 + +3.7
2,363,343 - CCNA_02215 0.74 +0.5
2,363,380 - CCNA_02215 0.77 -0.4
2,363,380 - CCNA_02215 0.77 -2.8
2,363,386 + CCNA_02215 0.77 -2.1
2,363,483 - CCNA_02215 0.85 -2.1
2,363,483 - CCNA_02215 0.85 -1.5
2,363,488 - CCNA_02215 0.86 +0.6
2,363,490 + CCNA_02215 0.86 -0.8
2,363,503 - CCNA_02215 0.87 -0.3
2,363,530 + CCNA_02215 0.89 -1.0
2,363,537 - CCNA_02215 0.90 +0.6
2,363,538 - CCNA_02215 0.90 +1.3
2,363,543 - +0.0
2,363,561 - +0.4
2,363,589 - +1.1
2,363,625 - +2.0
2,363,631 - -0.5
2,363,635 + +0.8
2,363,636 + -2.0
2,363,669 + -0.7
2,363,669 + +0.8
2,363,669 + +0.5
2,363,671 + -1.7
2,363,677 - -0.4
2,363,677 - +1.9
2,363,679 + -0.7
2,363,759 + CCNA_02216 0.31 +0.8
2,363,767 - CCNA_02216 0.34 +0.5
2,363,787 + CCNA_02216 0.41 -0.9
2,363,795 + CCNA_02216 0.43 -0.2
2,363,831 - CCNA_02216 0.56 -0.1
2,363,850 + CCNA_02216 0.62 -0.8
2,363,858 - CCNA_02216 0.65 -0.7
2,363,876 - CCNA_02216 0.71 -0.5
2,363,916 + CCNA_02216 0.85 -1.2
2,363,940 - +1.8
2,364,000 - +0.1
2,364,066 - +0.3
2,364,076 - -0.4
2,364,077 + -0.2
2,364,079 + -2.8
2,364,087 - +0.8
2,364,087 - +0.1
2,364,087 - +0.1
2,364,087 - +0.2
2,364,099 + -0.4
2,364,141 + CCNA_02217 0.20 -0.2
2,364,149 - CCNA_02217 0.22 -0.0
2,364,276 + CCNA_02217 0.64 -3.4
2,364,334 + CCNA_02217 0.83 +0.3
2,364,479 + +0.3
2,364,487 - -0.7
2,364,535 + -0.1
2,364,555 + CCNA_02218 0.10 -0.8
2,364,563 - CCNA_02218 0.12 +1.0
2,364,563 - CCNA_02218 0.12 -0.7
2,364,563 - CCNA_02218 0.12 -0.5
2,364,611 + CCNA_02218 0.19 -0.2
2,364,629 - CCNA_02218 0.21 -0.7
2,364,629 - CCNA_02218 0.21 -0.9
2,364,634 - CCNA_02218 0.22 -1.5
2,364,634 - CCNA_02218 0.22 -0.5
2,364,657 - CCNA_02218 0.25 -2.0
2,364,659 + CCNA_02218 0.25 -0.1
2,364,689 - CCNA_02218 0.30 -0.3
2,364,689 - CCNA_02218 0.30 -0.3
2,364,690 - CCNA_02218 0.30 +0.3
2,364,691 - CCNA_02218 0.30 -1.0
2,364,729 - CCNA_02218 0.35 -0.7
2,364,729 - CCNA_02218 0.35 -0.4
2,364,736 + CCNA_02218 0.36 +0.3
2,364,831 + CCNA_02218 0.50 -1.2
2,364,831 + CCNA_02218 0.50 +1.6
2,364,873 - CCNA_02218 0.56 -1.0
2,364,873 - CCNA_02218 0.56 +0.8

Or see this region's nucleotide sequence