Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02215 and CCNA_02216 are separated by 6 nucleotides CCNA_02216 and CCNA_02217 are separated by 121 nucleotides CCNA_02217 and CCNA_02218 are separated by 98 nucleotides
CCNA_02215: CCNA_02215 - acyl-CoA dehydrogenase, at 2,362,451 to 2,363,662
_02215
CCNA_02216: CCNA_02216 - ABM family monooxygenase, at 2,363,669 to 2,363,959
_02216
CCNA_02217: CCNA_02217 - hypothetical protein, at 2,364,081 to 2,364,383
_02217
CCNA_02218: CCNA_02218 - DnaJ-like protein djlA, at 2,364,482 to 2,365,177
_02218
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2362.677 kb on - strand, within CCNA_02215 at 2362.677 kb on - strand, within CCNA_02215 at 2362.677 kb on - strand, within CCNA_02215 at 2362.729 kb on + strand, within CCNA_02215 at 2362.815 kb on + strand, within CCNA_02215 at 2362.852 kb on - strand, within CCNA_02215 at 2362.854 kb on + strand, within CCNA_02215 at 2362.860 kb on + strand, within CCNA_02215 at 2362.910 kb on - strand, within CCNA_02215 at 2362.910 kb on - strand, within CCNA_02215 at 2362.947 kb on + strand, within CCNA_02215 at 2363.003 kb on + strand, within CCNA_02215 at 2363.039 kb on + strand, within CCNA_02215 at 2363.063 kb on - strand, within CCNA_02215 at 2363.081 kb on - strand, within CCNA_02215 at 2363.168 kb on + strand, within CCNA_02215 at 2363.168 kb on + strand, within CCNA_02215 at 2363.173 kb on + strand, within CCNA_02215 at 2363.176 kb on - strand, within CCNA_02215 at 2363.176 kb on - strand, within CCNA_02215 at 2363.186 kb on - strand, within CCNA_02215 at 2363.224 kb on + strand, within CCNA_02215 at 2363.234 kb on - strand, within CCNA_02215 at 2363.243 kb on + strand, within CCNA_02215 at 2363.243 kb on + strand, within CCNA_02215 at 2363.251 kb on - strand, within CCNA_02215 at 2363.271 kb on + strand, within CCNA_02215 at 2363.335 kb on + strand at 2363.343 kb on - strand, within CCNA_02215 at 2363.380 kb on - strand, within CCNA_02215 at 2363.380 kb on - strand, within CCNA_02215 at 2363.386 kb on + strand, within CCNA_02215 at 2363.483 kb on - strand, within CCNA_02215 at 2363.483 kb on - strand, within CCNA_02215 at 2363.488 kb on - strand, within CCNA_02215 at 2363.490 kb on + strand, within CCNA_02215 at 2363.503 kb on - strand, within CCNA_02215 at 2363.530 kb on + strand, within CCNA_02215 at 2363.537 kb on - strand, within CCNA_02215 at 2363.538 kb on - strand, within CCNA_02215 at 2363.543 kb on - strand at 2363.561 kb on - strand at 2363.589 kb on - strand at 2363.625 kb on - strand at 2363.631 kb on - strand at 2363.635 kb on + strand at 2363.636 kb on + strand at 2363.669 kb on + strand at 2363.669 kb on + strand at 2363.669 kb on + strand at 2363.671 kb on + strand at 2363.677 kb on - strand at 2363.677 kb on - strand at 2363.679 kb on + strand at 2363.759 kb on + strand, within CCNA_02216 at 2363.767 kb on - strand, within CCNA_02216 at 2363.787 kb on + strand, within CCNA_02216 at 2363.795 kb on + strand, within CCNA_02216 at 2363.831 kb on - strand, within CCNA_02216 at 2363.850 kb on + strand, within CCNA_02216 at 2363.858 kb on - strand, within CCNA_02216 at 2363.876 kb on - strand, within CCNA_02216 at 2363.916 kb on + strand, within CCNA_02216 at 2363.940 kb on - strand at 2364.000 kb on - strand at 2364.066 kb on - strand at 2364.076 kb on - strand at 2364.077 kb on + strand at 2364.079 kb on + strand at 2364.087 kb on - strand at 2364.087 kb on - strand at 2364.087 kb on - strand at 2364.087 kb on - strand at 2364.099 kb on + strand at 2364.141 kb on + strand, within CCNA_02217 at 2364.149 kb on - strand, within CCNA_02217 at 2364.276 kb on + strand, within CCNA_02217 at 2364.334 kb on + strand, within CCNA_02217 at 2364.479 kb on + strand at 2364.487 kb on - strand at 2364.535 kb on + strand at 2364.555 kb on + strand, within CCNA_02218 at 2364.563 kb on - strand, within CCNA_02218 at 2364.563 kb on - strand, within CCNA_02218 at 2364.563 kb on - strand, within CCNA_02218 at 2364.611 kb on + strand, within CCNA_02218 at 2364.629 kb on - strand, within CCNA_02218 at 2364.629 kb on - strand, within CCNA_02218 at 2364.634 kb on - strand, within CCNA_02218 at 2364.634 kb on - strand, within CCNA_02218 at 2364.657 kb on - strand, within CCNA_02218 at 2364.659 kb on + strand, within CCNA_02218 at 2364.689 kb on - strand, within CCNA_02218 at 2364.689 kb on - strand, within CCNA_02218 at 2364.690 kb on - strand, within CCNA_02218 at 2364.691 kb on - strand, within CCNA_02218 at 2364.729 kb on - strand, within CCNA_02218 at 2364.729 kb on - strand, within CCNA_02218 at 2364.736 kb on + strand, within CCNA_02218 at 2364.831 kb on + strand, within CCNA_02218 at 2364.831 kb on + strand, within CCNA_02218 at 2364.873 kb on - strand, within CCNA_02218 at 2364.873 kb on - strand, within CCNA_02218
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,362,677 - CCNA_02215 0.19 -0.7 2,362,677 - CCNA_02215 0.19 -0.7 2,362,677 - CCNA_02215 0.19 +0.7 2,362,729 + CCNA_02215 0.23 -0.1 2,362,815 + CCNA_02215 0.30 -1.0 2,362,852 - CCNA_02215 0.33 -0.8 2,362,854 + CCNA_02215 0.33 +0.6 2,362,860 + CCNA_02215 0.34 -0.5 2,362,910 - CCNA_02215 0.38 +1.0 2,362,910 - CCNA_02215 0.38 +0.7 2,362,947 + CCNA_02215 0.41 +0.2 2,363,003 + CCNA_02215 0.46 -0.5 2,363,039 + CCNA_02215 0.49 -1.9 2,363,063 - CCNA_02215 0.50 -0.7 2,363,081 - CCNA_02215 0.52 +0.0 2,363,168 + CCNA_02215 0.59 +0.2 2,363,168 + CCNA_02215 0.59 +0.7 2,363,173 + CCNA_02215 0.60 -1.0 2,363,176 - CCNA_02215 0.60 +0.4 2,363,176 - CCNA_02215 0.60 -1.5 2,363,186 - CCNA_02215 0.61 +0.2 2,363,224 + CCNA_02215 0.64 -1.3 2,363,234 - CCNA_02215 0.65 +0.8 2,363,243 + CCNA_02215 0.65 -0.1 2,363,243 + CCNA_02215 0.65 -0.3 2,363,251 - CCNA_02215 0.66 +0.5 2,363,271 + CCNA_02215 0.68 +0.0 2,363,335 + +3.7 2,363,343 - CCNA_02215 0.74 +0.5 2,363,380 - CCNA_02215 0.77 -0.4 2,363,380 - CCNA_02215 0.77 -2.8 2,363,386 + CCNA_02215 0.77 -2.1 2,363,483 - CCNA_02215 0.85 -2.1 2,363,483 - CCNA_02215 0.85 -1.5 2,363,488 - CCNA_02215 0.86 +0.6 2,363,490 + CCNA_02215 0.86 -0.8 2,363,503 - CCNA_02215 0.87 -0.3 2,363,530 + CCNA_02215 0.89 -1.0 2,363,537 - CCNA_02215 0.90 +0.6 2,363,538 - CCNA_02215 0.90 +1.3 2,363,543 - +0.0 2,363,561 - +0.4 2,363,589 - +1.1 2,363,625 - +2.0 2,363,631 - -0.5 2,363,635 + +0.8 2,363,636 + -2.0 2,363,669 + -0.7 2,363,669 + +0.8 2,363,669 + +0.5 2,363,671 + -1.7 2,363,677 - -0.4 2,363,677 - +1.9 2,363,679 + -0.7 2,363,759 + CCNA_02216 0.31 +0.8 2,363,767 - CCNA_02216 0.34 +0.5 2,363,787 + CCNA_02216 0.41 -0.9 2,363,795 + CCNA_02216 0.43 -0.2 2,363,831 - CCNA_02216 0.56 -0.1 2,363,850 + CCNA_02216 0.62 -0.8 2,363,858 - CCNA_02216 0.65 -0.7 2,363,876 - CCNA_02216 0.71 -0.5 2,363,916 + CCNA_02216 0.85 -1.2 2,363,940 - +1.8 2,364,000 - +0.1 2,364,066 - +0.3 2,364,076 - -0.4 2,364,077 + -0.2 2,364,079 + -2.8 2,364,087 - +0.8 2,364,087 - +0.1 2,364,087 - +0.1 2,364,087 - +0.2 2,364,099 + -0.4 2,364,141 + CCNA_02217 0.20 -0.2 2,364,149 - CCNA_02217 0.22 -0.0 2,364,276 + CCNA_02217 0.64 -3.4 2,364,334 + CCNA_02217 0.83 +0.3 2,364,479 + +0.3 2,364,487 - -0.7 2,364,535 + -0.1 2,364,555 + CCNA_02218 0.10 -0.8 2,364,563 - CCNA_02218 0.12 +1.0 2,364,563 - CCNA_02218 0.12 -0.7 2,364,563 - CCNA_02218 0.12 -0.5 2,364,611 + CCNA_02218 0.19 -0.2 2,364,629 - CCNA_02218 0.21 -0.7 2,364,629 - CCNA_02218 0.21 -0.9 2,364,634 - CCNA_02218 0.22 -1.5 2,364,634 - CCNA_02218 0.22 -0.5 2,364,657 - CCNA_02218 0.25 -2.0 2,364,659 + CCNA_02218 0.25 -0.1 2,364,689 - CCNA_02218 0.30 -0.3 2,364,689 - CCNA_02218 0.30 -0.3 2,364,690 - CCNA_02218 0.30 +0.3 2,364,691 - CCNA_02218 0.30 -1.0 2,364,729 - CCNA_02218 0.35 -0.7 2,364,729 - CCNA_02218 0.35 -0.4 2,364,736 + CCNA_02218 0.36 +0.3 2,364,831 + CCNA_02218 0.50 -1.2 2,364,831 + CCNA_02218 0.50 +1.6 2,364,873 - CCNA_02218 0.56 -1.0 2,364,873 - CCNA_02218 0.56 +0.8
Or see this region's nucleotide sequence