Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02174 and CCNA_02175 are separated by 10 nucleotides CCNA_02175 and CCNA_02176 are separated by 14 nucleotides CCNA_02176 and CCNA_02177 are separated by 78 nucleotides CCNA_02177 and CCNA_02178 are separated by 63 nucleotides
CCNA_02174: CCNA_02174 - multidrug resistance efflux pump, at 2,326,862 to 2,327,866
_02174
CCNA_02175: CCNA_02175 - hypothetical protein, at 2,327,877 to 2,328,401
_02175
CCNA_02176: CCNA_02176 - hypothetical protein, at 2,328,416 to 2,328,604
_02176
CCNA_02177: CCNA_02177 - hypothetical protein, at 2,328,683 to 2,328,937
_02177
CCNA_02178: CCNA_02178 - short-chain alcohol dehydrogenase, at 2,329,001 to 2,329,906
_02178
Position (kb)
2328
2329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2327.691 kb on + strand, within CCNA_02174 at 2327.691 kb on + strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.699 kb on - strand, within CCNA_02174 at 2327.734 kb on - strand, within CCNA_02174 at 2327.734 kb on - strand, within CCNA_02174 at 2327.862 kb on + strand at 2327.868 kb on - strand at 2327.889 kb on + strand at 2327.889 kb on + strand at 2327.889 kb on + strand at 2327.897 kb on - strand at 2327.900 kb on - strand at 2327.929 kb on - strand at 2327.936 kb on + strand, within CCNA_02175 at 2327.936 kb on + strand, within CCNA_02175 at 2327.944 kb on - strand, within CCNA_02175 at 2327.949 kb on + strand, within CCNA_02175 at 2327.950 kb on + strand, within CCNA_02175 at 2327.954 kb on + strand, within CCNA_02175 at 2328.003 kb on - strand, within CCNA_02175 at 2328.015 kb on - strand, within CCNA_02175 at 2328.167 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.189 kb on + strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.197 kb on - strand, within CCNA_02175 at 2328.238 kb on + strand, within CCNA_02175 at 2328.255 kb on - strand, within CCNA_02175 at 2328.328 kb on - strand, within CCNA_02175 at 2328.379 kb on - strand at 2328.402 kb on - strand at 2328.519 kb on + strand, within CCNA_02176 at 2328.541 kb on - strand, within CCNA_02176 at 2328.685 kb on - strand at 2328.685 kb on - strand at 2328.701 kb on - strand at 2328.754 kb on + strand, within CCNA_02177 at 2328.887 kb on - strand, within CCNA_02177 at 2328.931 kb on + strand at 2328.939 kb on - strand at 2328.941 kb on + strand at 2328.962 kb on - strand at 2329.045 kb on + strand at 2329.070 kb on - strand at 2329.074 kb on + strand at 2329.082 kb on - strand at 2329.123 kb on - strand, within CCNA_02178 at 2329.165 kb on + strand, within CCNA_02178 at 2329.168 kb on - strand, within CCNA_02178 at 2329.180 kb on + strand, within CCNA_02178 at 2329.244 kb on + strand, within CCNA_02178 at 2329.269 kb on - strand, within CCNA_02178 at 2329.280 kb on - strand, within CCNA_02178 at 2329.280 kb on - strand, within CCNA_02178 at 2329.280 kb on - strand, within CCNA_02178 at 2329.311 kb on - strand, within CCNA_02178 at 2329.330 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.360 kb on + strand, within CCNA_02178 at 2329.368 kb on - strand, within CCNA_02178 at 2329.377 kb on - strand, within CCNA_02178 at 2329.378 kb on + strand, within CCNA_02178 at 2329.386 kb on + strand, within CCNA_02178 at 2329.386 kb on + strand, within CCNA_02178 at 2329.396 kb on + strand, within CCNA_02178 at 2329.396 kb on + strand, within CCNA_02178 at 2329.396 kb on + strand, within CCNA_02178 at 2329.396 kb on + strand, within CCNA_02178 at 2329.404 kb on - strand, within CCNA_02178 at 2329.406 kb on + strand, within CCNA_02178 at 2329.424 kb on + strand, within CCNA_02178 at 2329.432 kb on - strand, within CCNA_02178 at 2329.432 kb on - strand, within CCNA_02178 at 2329.432 kb on - strand, within CCNA_02178 at 2329.517 kb on + strand, within CCNA_02178 at 2329.570 kb on + strand, within CCNA_02178 at 2329.578 kb on - strand, within CCNA_02178 at 2329.616 kb on - strand, within CCNA_02178 at 2329.631 kb on + strand, within CCNA_02178 at 2329.683 kb on + strand, within CCNA_02178 at 2329.702 kb on - strand, within CCNA_02178 at 2329.717 kb on - strand, within CCNA_02178 at 2329.756 kb on + strand, within CCNA_02178 at 2329.764 kb on - strand, within CCNA_02178 at 2329.772 kb on - strand, within CCNA_02178 at 2329.802 kb on - strand, within CCNA_02178 at 2329.812 kb on + strand, within CCNA_02178 at 2329.822 kb on + strand at 2329.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,327,691 + CCNA_02174 0.82 -0.0 2,327,691 + CCNA_02174 0.82 +0.4 2,327,699 - CCNA_02174 0.83 +0.0 2,327,699 - CCNA_02174 0.83 +1.0 2,327,699 - CCNA_02174 0.83 -1.3 2,327,734 - CCNA_02174 0.87 -1.3 2,327,734 - CCNA_02174 0.87 -1.7 2,327,862 + +1.2 2,327,868 - +0.2 2,327,889 + +1.0 2,327,889 + -1.4 2,327,889 + +1.3 2,327,897 - +0.5 2,327,900 - +0.9 2,327,929 - +0.6 2,327,936 + CCNA_02175 0.11 -0.4 2,327,936 + CCNA_02175 0.11 -0.0 2,327,944 - CCNA_02175 0.13 +2.4 2,327,949 + CCNA_02175 0.14 -1.2 2,327,950 + CCNA_02175 0.14 +0.1 2,327,954 + CCNA_02175 0.15 -0.4 2,328,003 - CCNA_02175 0.24 -1.2 2,328,015 - CCNA_02175 0.26 -2.2 2,328,167 + CCNA_02175 0.55 +1.8 2,328,189 + CCNA_02175 0.59 -0.6 2,328,189 + CCNA_02175 0.59 +0.2 2,328,189 + CCNA_02175 0.59 -0.8 2,328,197 - CCNA_02175 0.61 -1.0 2,328,197 - CCNA_02175 0.61 -1.7 2,328,197 - CCNA_02175 0.61 -1.8 2,328,238 + CCNA_02175 0.69 +0.8 2,328,255 - CCNA_02175 0.72 +3.1 2,328,328 - CCNA_02175 0.86 -0.7 2,328,379 - -2.4 2,328,402 - -0.3 2,328,519 + CCNA_02176 0.54 +1.8 2,328,541 - CCNA_02176 0.66 -1.5 2,328,685 - -0.8 2,328,685 - +2.7 2,328,701 - -1.9 2,328,754 + CCNA_02177 0.28 -0.9 2,328,887 - CCNA_02177 0.80 -1.4 2,328,931 + -0.7 2,328,939 - -1.1 2,328,941 + +1.2 2,328,962 - -0.8 2,329,045 + +0.6 2,329,070 - +0.1 2,329,074 + +0.6 2,329,082 - -0.2 2,329,123 - CCNA_02178 0.13 -0.0 2,329,165 + CCNA_02178 0.18 -1.8 2,329,168 - CCNA_02178 0.18 -0.2 2,329,180 + CCNA_02178 0.20 +0.8 2,329,244 + CCNA_02178 0.27 +0.3 2,329,269 - CCNA_02178 0.30 +0.0 2,329,280 - CCNA_02178 0.31 -0.8 2,329,280 - CCNA_02178 0.31 -1.8 2,329,280 - CCNA_02178 0.31 -0.4 2,329,311 - CCNA_02178 0.34 +1.2 2,329,330 + CCNA_02178 0.36 +3.3 2,329,360 + CCNA_02178 0.40 +2.1 2,329,360 + CCNA_02178 0.40 -0.8 2,329,368 - CCNA_02178 0.41 +0.3 2,329,377 - CCNA_02178 0.42 -0.1 2,329,378 + CCNA_02178 0.42 -1.2 2,329,386 + CCNA_02178 0.42 -0.2 2,329,386 + CCNA_02178 0.42 -0.3 2,329,396 + CCNA_02178 0.44 +0.0 2,329,396 + CCNA_02178 0.44 +0.0 2,329,396 + CCNA_02178 0.44 +0.3 2,329,396 + CCNA_02178 0.44 -1.3 2,329,404 - CCNA_02178 0.44 +1.8 2,329,406 + CCNA_02178 0.45 +0.0 2,329,424 + CCNA_02178 0.47 -0.3 2,329,432 - CCNA_02178 0.48 -0.2 2,329,432 - CCNA_02178 0.48 -0.8 2,329,432 - CCNA_02178 0.48 +0.8 2,329,517 + CCNA_02178 0.57 +1.0 2,329,570 + CCNA_02178 0.63 +0.1 2,329,578 - CCNA_02178 0.64 -0.1 2,329,616 - CCNA_02178 0.68 -3.1 2,329,631 + CCNA_02178 0.70 +0.6 2,329,683 + CCNA_02178 0.75 +0.7 2,329,702 - CCNA_02178 0.77 -0.7 2,329,717 - CCNA_02178 0.79 -2.6 2,329,756 + CCNA_02178 0.83 -1.1 2,329,764 - CCNA_02178 0.84 -0.1 2,329,772 - CCNA_02178 0.85 -0.1 2,329,802 - CCNA_02178 0.88 -0.2 2,329,812 + CCNA_02178 0.90 +0.3 2,329,822 + +3.3 2,329,825 - -1.6
Or see this region's nucleotide sequence