Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02177

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02174 and CCNA_02175 are separated by 10 nucleotidesCCNA_02175 and CCNA_02176 are separated by 14 nucleotidesCCNA_02176 and CCNA_02177 are separated by 78 nucleotidesCCNA_02177 and CCNA_02178 are separated by 63 nucleotides CCNA_02174: CCNA_02174 - multidrug resistance efflux pump, at 2,326,862 to 2,327,866 _02174 CCNA_02175: CCNA_02175 - hypothetical protein, at 2,327,877 to 2,328,401 _02175 CCNA_02176: CCNA_02176 - hypothetical protein, at 2,328,416 to 2,328,604 _02176 CCNA_02177: CCNA_02177 - hypothetical protein, at 2,328,683 to 2,328,937 _02177 CCNA_02178: CCNA_02178 - short-chain alcohol dehydrogenase, at 2,329,001 to 2,329,906 _02178 Position (kb) 2328 2329Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2327.691 kb on + strand, within CCNA_02174at 2327.691 kb on + strand, within CCNA_02174at 2327.699 kb on - strand, within CCNA_02174at 2327.699 kb on - strand, within CCNA_02174at 2327.699 kb on - strand, within CCNA_02174at 2327.734 kb on - strand, within CCNA_02174at 2327.734 kb on - strand, within CCNA_02174at 2327.862 kb on + strandat 2327.868 kb on - strandat 2327.889 kb on + strandat 2327.889 kb on + strandat 2327.889 kb on + strandat 2327.897 kb on - strandat 2327.900 kb on - strandat 2327.929 kb on - strandat 2327.936 kb on + strand, within CCNA_02175at 2327.936 kb on + strand, within CCNA_02175at 2327.944 kb on - strand, within CCNA_02175at 2327.949 kb on + strand, within CCNA_02175at 2327.950 kb on + strand, within CCNA_02175at 2327.954 kb on + strand, within CCNA_02175at 2328.003 kb on - strand, within CCNA_02175at 2328.015 kb on - strand, within CCNA_02175at 2328.167 kb on + strand, within CCNA_02175at 2328.189 kb on + strand, within CCNA_02175at 2328.189 kb on + strand, within CCNA_02175at 2328.189 kb on + strand, within CCNA_02175at 2328.197 kb on - strand, within CCNA_02175at 2328.197 kb on - strand, within CCNA_02175at 2328.197 kb on - strand, within CCNA_02175at 2328.238 kb on + strand, within CCNA_02175at 2328.255 kb on - strand, within CCNA_02175at 2328.328 kb on - strand, within CCNA_02175at 2328.379 kb on - strandat 2328.402 kb on - strandat 2328.519 kb on + strand, within CCNA_02176at 2328.541 kb on - strand, within CCNA_02176at 2328.685 kb on - strandat 2328.685 kb on - strandat 2328.701 kb on - strandat 2328.754 kb on + strand, within CCNA_02177at 2328.887 kb on - strand, within CCNA_02177at 2328.931 kb on + strandat 2328.939 kb on - strandat 2328.941 kb on + strandat 2328.962 kb on - strandat 2329.045 kb on + strandat 2329.070 kb on - strandat 2329.074 kb on + strandat 2329.082 kb on - strandat 2329.123 kb on - strand, within CCNA_02178at 2329.165 kb on + strand, within CCNA_02178at 2329.168 kb on - strand, within CCNA_02178at 2329.180 kb on + strand, within CCNA_02178at 2329.244 kb on + strand, within CCNA_02178at 2329.269 kb on - strand, within CCNA_02178at 2329.280 kb on - strand, within CCNA_02178at 2329.280 kb on - strand, within CCNA_02178at 2329.280 kb on - strand, within CCNA_02178at 2329.311 kb on - strand, within CCNA_02178at 2329.330 kb on + strand, within CCNA_02178at 2329.360 kb on + strand, within CCNA_02178at 2329.360 kb on + strand, within CCNA_02178at 2329.368 kb on - strand, within CCNA_02178at 2329.377 kb on - strand, within CCNA_02178at 2329.378 kb on + strand, within CCNA_02178at 2329.386 kb on + strand, within CCNA_02178at 2329.386 kb on + strand, within CCNA_02178at 2329.396 kb on + strand, within CCNA_02178at 2329.396 kb on + strand, within CCNA_02178at 2329.396 kb on + strand, within CCNA_02178at 2329.396 kb on + strand, within CCNA_02178at 2329.404 kb on - strand, within CCNA_02178at 2329.406 kb on + strand, within CCNA_02178at 2329.424 kb on + strand, within CCNA_02178at 2329.432 kb on - strand, within CCNA_02178at 2329.432 kb on - strand, within CCNA_02178at 2329.432 kb on - strand, within CCNA_02178at 2329.517 kb on + strand, within CCNA_02178at 2329.570 kb on + strand, within CCNA_02178at 2329.578 kb on - strand, within CCNA_02178at 2329.616 kb on - strand, within CCNA_02178at 2329.631 kb on + strand, within CCNA_02178at 2329.683 kb on + strand, within CCNA_02178at 2329.702 kb on - strand, within CCNA_02178at 2329.717 kb on - strand, within CCNA_02178at 2329.756 kb on + strand, within CCNA_02178at 2329.764 kb on - strand, within CCNA_02178at 2329.772 kb on - strand, within CCNA_02178at 2329.802 kb on - strand, within CCNA_02178at 2329.812 kb on + strand, within CCNA_02178at 2329.822 kb on + strandat 2329.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,327,691 + CCNA_02174 0.82 -0.0
2,327,691 + CCNA_02174 0.82 +0.4
2,327,699 - CCNA_02174 0.83 +0.0
2,327,699 - CCNA_02174 0.83 +1.0
2,327,699 - CCNA_02174 0.83 -1.3
2,327,734 - CCNA_02174 0.87 -1.3
2,327,734 - CCNA_02174 0.87 -1.7
2,327,862 + +1.2
2,327,868 - +0.2
2,327,889 + +1.0
2,327,889 + -1.4
2,327,889 + +1.3
2,327,897 - +0.5
2,327,900 - +0.9
2,327,929 - +0.6
2,327,936 + CCNA_02175 0.11 -0.4
2,327,936 + CCNA_02175 0.11 -0.0
2,327,944 - CCNA_02175 0.13 +2.4
2,327,949 + CCNA_02175 0.14 -1.2
2,327,950 + CCNA_02175 0.14 +0.1
2,327,954 + CCNA_02175 0.15 -0.4
2,328,003 - CCNA_02175 0.24 -1.2
2,328,015 - CCNA_02175 0.26 -2.2
2,328,167 + CCNA_02175 0.55 +1.8
2,328,189 + CCNA_02175 0.59 -0.6
2,328,189 + CCNA_02175 0.59 +0.2
2,328,189 + CCNA_02175 0.59 -0.8
2,328,197 - CCNA_02175 0.61 -1.0
2,328,197 - CCNA_02175 0.61 -1.7
2,328,197 - CCNA_02175 0.61 -1.8
2,328,238 + CCNA_02175 0.69 +0.8
2,328,255 - CCNA_02175 0.72 +3.1
2,328,328 - CCNA_02175 0.86 -0.7
2,328,379 - -2.4
2,328,402 - -0.3
2,328,519 + CCNA_02176 0.54 +1.8
2,328,541 - CCNA_02176 0.66 -1.5
2,328,685 - -0.8
2,328,685 - +2.7
2,328,701 - -1.9
2,328,754 + CCNA_02177 0.28 -0.9
2,328,887 - CCNA_02177 0.80 -1.4
2,328,931 + -0.7
2,328,939 - -1.1
2,328,941 + +1.2
2,328,962 - -0.8
2,329,045 + +0.6
2,329,070 - +0.1
2,329,074 + +0.6
2,329,082 - -0.2
2,329,123 - CCNA_02178 0.13 -0.0
2,329,165 + CCNA_02178 0.18 -1.8
2,329,168 - CCNA_02178 0.18 -0.2
2,329,180 + CCNA_02178 0.20 +0.8
2,329,244 + CCNA_02178 0.27 +0.3
2,329,269 - CCNA_02178 0.30 +0.0
2,329,280 - CCNA_02178 0.31 -0.8
2,329,280 - CCNA_02178 0.31 -1.8
2,329,280 - CCNA_02178 0.31 -0.4
2,329,311 - CCNA_02178 0.34 +1.2
2,329,330 + CCNA_02178 0.36 +3.3
2,329,360 + CCNA_02178 0.40 +2.1
2,329,360 + CCNA_02178 0.40 -0.8
2,329,368 - CCNA_02178 0.41 +0.3
2,329,377 - CCNA_02178 0.42 -0.1
2,329,378 + CCNA_02178 0.42 -1.2
2,329,386 + CCNA_02178 0.42 -0.2
2,329,386 + CCNA_02178 0.42 -0.3
2,329,396 + CCNA_02178 0.44 +0.0
2,329,396 + CCNA_02178 0.44 +0.0
2,329,396 + CCNA_02178 0.44 +0.3
2,329,396 + CCNA_02178 0.44 -1.3
2,329,404 - CCNA_02178 0.44 +1.8
2,329,406 + CCNA_02178 0.45 +0.0
2,329,424 + CCNA_02178 0.47 -0.3
2,329,432 - CCNA_02178 0.48 -0.2
2,329,432 - CCNA_02178 0.48 -0.8
2,329,432 - CCNA_02178 0.48 +0.8
2,329,517 + CCNA_02178 0.57 +1.0
2,329,570 + CCNA_02178 0.63 +0.1
2,329,578 - CCNA_02178 0.64 -0.1
2,329,616 - CCNA_02178 0.68 -3.1
2,329,631 + CCNA_02178 0.70 +0.6
2,329,683 + CCNA_02178 0.75 +0.7
2,329,702 - CCNA_02178 0.77 -0.7
2,329,717 - CCNA_02178 0.79 -2.6
2,329,756 + CCNA_02178 0.83 -1.1
2,329,764 - CCNA_02178 0.84 -0.1
2,329,772 - CCNA_02178 0.85 -0.1
2,329,802 - CCNA_02178 0.88 -0.2
2,329,812 + CCNA_02178 0.90 +0.3
2,329,822 + +3.3
2,329,825 - -1.6

Or see this region's nucleotide sequence