Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02117

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02116 and CCNA_02117 are separated by 114 nucleotidesCCNA_02117 and CCNA_02118 are separated by 82 nucleotides CCNA_02116: CCNA_02116 - hypothetical protein, at 2,265,728 to 2,266,525 _02116 CCNA_02117: CCNA_02117 - polyketide cyclase/lipid transport protein, at 2,266,640 to 2,267,236 _02117 CCNA_02118: CCNA_02118 - ATP-dependent helicase, dinG family, at 2,267,319 to 2,269,502 _02118 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2265.708 kb on + strandat 2265.715 kb on - strandat 2265.726 kb on + strandat 2265.732 kb on - strandat 2265.739 kb on + strandat 2265.739 kb on + strandat 2265.741 kb on + strandat 2265.747 kb on - strandat 2265.753 kb on + strandat 2265.761 kb on - strandat 2265.855 kb on + strand, within CCNA_02116at 2265.867 kb on + strand, within CCNA_02116at 2265.892 kb on - strand, within CCNA_02116at 2265.892 kb on - strand, within CCNA_02116at 2265.922 kb on - strand, within CCNA_02116at 2265.972 kb on - strand, within CCNA_02116at 2265.976 kb on - strand, within CCNA_02116at 2266.010 kb on + strand, within CCNA_02116at 2266.018 kb on - strand, within CCNA_02116at 2266.032 kb on - strand, within CCNA_02116at 2266.032 kb on - strand, within CCNA_02116at 2266.032 kb on - strand, within CCNA_02116at 2266.041 kb on - strand, within CCNA_02116at 2266.079 kb on - strand, within CCNA_02116at 2266.084 kb on - strand, within CCNA_02116at 2266.143 kb on + strand, within CCNA_02116at 2266.151 kb on - strand, within CCNA_02116at 2266.151 kb on - strand, within CCNA_02116at 2266.151 kb on - strand, within CCNA_02116at 2266.151 kb on - strand, within CCNA_02116at 2266.166 kb on - strand, within CCNA_02116at 2266.266 kb on - strand, within CCNA_02116at 2266.344 kb on + strand, within CCNA_02116at 2266.348 kb on + strand, within CCNA_02116at 2266.352 kb on - strand, within CCNA_02116at 2266.382 kb on - strand, within CCNA_02116at 2266.388 kb on - strand, within CCNA_02116at 2266.430 kb on + strand, within CCNA_02116at 2266.711 kb on - strand, within CCNA_02117at 2266.717 kb on + strand, within CCNA_02117at 2266.720 kb on - strand, within CCNA_02117at 2266.725 kb on - strand, within CCNA_02117at 2266.790 kb on - strand, within CCNA_02117at 2266.847 kb on + strand, within CCNA_02117at 2266.847 kb on + strand, within CCNA_02117at 2266.855 kb on - strand, within CCNA_02117at 2266.910 kb on + strand, within CCNA_02117at 2266.934 kb on + strandat 2266.942 kb on - strand, within CCNA_02117at 2267.027 kb on - strand, within CCNA_02117at 2267.111 kb on - strand, within CCNA_02117at 2267.113 kb on + strand, within CCNA_02117at 2267.130 kb on + strand, within CCNA_02117at 2267.130 kb on + strand, within CCNA_02117at 2267.130 kb on + strand, within CCNA_02117at 2267.138 kb on - strand, within CCNA_02117at 2267.138 kb on - strand, within CCNA_02117at 2267.138 kb on - strand, within CCNA_02117at 2267.149 kb on + strand, within CCNA_02117at 2267.157 kb on - strand, within CCNA_02117at 2267.157 kb on - strand, within CCNA_02117at 2267.162 kb on + strand, within CCNA_02117at 2267.163 kb on + strand, within CCNA_02117at 2267.164 kb on - strand, within CCNA_02117at 2267.165 kb on - strand, within CCNA_02117at 2267.165 kb on - strand, within CCNA_02117at 2267.170 kb on - strand, within CCNA_02117at 2267.206 kb on - strandat 2267.236 kb on - strandat 2267.324 kb on - strandat 2267.381 kb on + strandat 2267.522 kb on + strandat 2267.537 kb on - strandat 2267.557 kb on + strand, within CCNA_02118at 2267.565 kb on - strand, within CCNA_02118at 2267.565 kb on - strand, within CCNA_02118at 2267.578 kb on - strand, within CCNA_02118at 2267.601 kb on - strand, within CCNA_02118at 2267.630 kb on + strand, within CCNA_02118at 2267.639 kb on - strand, within CCNA_02118at 2267.666 kb on + strand, within CCNA_02118at 2267.712 kb on - strand, within CCNA_02118at 2267.712 kb on - strand, within CCNA_02118at 2267.760 kb on - strand, within CCNA_02118at 2267.778 kb on - strand, within CCNA_02118at 2267.788 kb on + strand, within CCNA_02118at 2267.796 kb on - strand, within CCNA_02118at 2267.796 kb on - strand, within CCNA_02118at 2267.796 kb on - strand, within CCNA_02118at 2267.806 kb on + strand, within CCNA_02118at 2267.806 kb on - strand, within CCNA_02118at 2267.809 kb on + strand, within CCNA_02118at 2267.879 kb on + strand, within CCNA_02118at 2267.887 kb on - strand, within CCNA_02118at 2267.939 kb on - strand, within CCNA_02118at 2267.970 kb on + strand, within CCNA_02118at 2267.996 kb on + strand, within CCNA_02118at 2268.041 kb on - strand, within CCNA_02118at 2268.041 kb on - strand, within CCNA_02118at 2268.041 kb on - strand, within CCNA_02118at 2268.046 kb on - strand, within CCNA_02118at 2268.061 kb on - strand, within CCNA_02118at 2268.104 kb on + strand, within CCNA_02118at 2268.124 kb on - strand, within CCNA_02118at 2268.140 kb on - strand, within CCNA_02118at 2268.188 kb on - strand, within CCNA_02118at 2268.231 kb on - strand, within CCNA_02118at 2268.231 kb on - strand, within CCNA_02118at 2268.231 kb on - strand, within CCNA_02118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,265,708 + -2.7
2,265,715 - -1.0
2,265,726 + +1.5
2,265,732 - -1.6
2,265,739 + -1.0
2,265,739 + -1.1
2,265,741 + -1.0
2,265,747 - -1.7
2,265,753 + +1.4
2,265,761 - -3.0
2,265,855 + CCNA_02116 0.16 -0.5
2,265,867 + CCNA_02116 0.17 -1.0
2,265,892 - CCNA_02116 0.21 -2.8
2,265,892 - CCNA_02116 0.21 -3.4
2,265,922 - CCNA_02116 0.24 +2.5
2,265,972 - CCNA_02116 0.31 +2.8
2,265,976 - CCNA_02116 0.31 -3.0
2,266,010 + CCNA_02116 0.35 +1.0
2,266,018 - CCNA_02116 0.36 +1.8
2,266,032 - CCNA_02116 0.38 -1.7
2,266,032 - CCNA_02116 0.38 -1.1
2,266,032 - CCNA_02116 0.38 +0.1
2,266,041 - CCNA_02116 0.39 +1.0
2,266,079 - CCNA_02116 0.44 -2.1
2,266,084 - CCNA_02116 0.45 -1.7
2,266,143 + CCNA_02116 0.52 -1.0
2,266,151 - CCNA_02116 0.53 -2.4
2,266,151 - CCNA_02116 0.53 -1.4
2,266,151 - CCNA_02116 0.53 -2.3
2,266,151 - CCNA_02116 0.53 +0.0
2,266,166 - CCNA_02116 0.55 -0.2
2,266,266 - CCNA_02116 0.67 -1.3
2,266,344 + CCNA_02116 0.77 +0.2
2,266,348 + CCNA_02116 0.78 -0.8
2,266,352 - CCNA_02116 0.78 -1.2
2,266,382 - CCNA_02116 0.82 -0.1
2,266,388 - CCNA_02116 0.83 -0.3
2,266,430 + CCNA_02116 0.88 -1.3
2,266,711 - CCNA_02117 0.12 -0.3
2,266,717 + CCNA_02117 0.13 +0.3
2,266,720 - CCNA_02117 0.13 -1.6
2,266,725 - CCNA_02117 0.14 -2.1
2,266,790 - CCNA_02117 0.25 -1.0
2,266,847 + CCNA_02117 0.35 -1.5
2,266,847 + CCNA_02117 0.35 -1.8
2,266,855 - CCNA_02117 0.36 -1.3
2,266,910 + CCNA_02117 0.45 -0.9
2,266,934 + +3.4
2,266,942 - CCNA_02117 0.51 -1.1
2,267,027 - CCNA_02117 0.65 -2.0
2,267,111 - CCNA_02117 0.79 -1.1
2,267,113 + CCNA_02117 0.79 +0.6
2,267,130 + CCNA_02117 0.82 -0.4
2,267,130 + CCNA_02117 0.82 -0.9
2,267,130 + CCNA_02117 0.82 -1.4
2,267,138 - CCNA_02117 0.83 -1.7
2,267,138 - CCNA_02117 0.83 -1.5
2,267,138 - CCNA_02117 0.83 -0.1
2,267,149 + CCNA_02117 0.85 -1.5
2,267,157 - CCNA_02117 0.87 -0.0
2,267,157 - CCNA_02117 0.87 -1.5
2,267,162 + CCNA_02117 0.87 +4.4
2,267,163 + CCNA_02117 0.88 -0.6
2,267,164 - CCNA_02117 0.88 -0.4
2,267,165 - CCNA_02117 0.88 +0.4
2,267,165 - CCNA_02117 0.88 -0.3
2,267,170 - CCNA_02117 0.89 -1.0
2,267,206 - +0.9
2,267,236 - -0.3
2,267,324 - +0.6
2,267,381 + -1.6
2,267,522 + +0.6
2,267,537 - -0.5
2,267,557 + CCNA_02118 0.11 -2.3
2,267,565 - CCNA_02118 0.11 -0.0
2,267,565 - CCNA_02118 0.11 +0.1
2,267,578 - CCNA_02118 0.12 +0.4
2,267,601 - CCNA_02118 0.13 -0.9
2,267,630 + CCNA_02118 0.14 -0.6
2,267,639 - CCNA_02118 0.15 -0.4
2,267,666 + CCNA_02118 0.16 -1.1
2,267,712 - CCNA_02118 0.18 -0.9
2,267,712 - CCNA_02118 0.18 -0.8
2,267,760 - CCNA_02118 0.20 +2.4
2,267,778 - CCNA_02118 0.21 -0.5
2,267,788 + CCNA_02118 0.21 -0.1
2,267,796 - CCNA_02118 0.22 +0.4
2,267,796 - CCNA_02118 0.22 -0.8
2,267,796 - CCNA_02118 0.22 +1.6
2,267,806 + CCNA_02118 0.22 +0.1
2,267,806 - CCNA_02118 0.22 -0.1
2,267,809 + CCNA_02118 0.22 -1.1
2,267,879 + CCNA_02118 0.26 +0.1
2,267,887 - CCNA_02118 0.26 -1.1
2,267,939 - CCNA_02118 0.28 -0.7
2,267,970 + CCNA_02118 0.30 -0.8
2,267,996 + CCNA_02118 0.31 +1.8
2,268,041 - CCNA_02118 0.33 -1.4
2,268,041 - CCNA_02118 0.33 +0.1
2,268,041 - CCNA_02118 0.33 +0.1
2,268,046 - CCNA_02118 0.33 -1.0
2,268,061 - CCNA_02118 0.34 -2.5
2,268,104 + CCNA_02118 0.36 -1.4
2,268,124 - CCNA_02118 0.37 +0.1
2,268,140 - CCNA_02118 0.38 +0.4
2,268,188 - CCNA_02118 0.40 -1.0
2,268,231 - CCNA_02118 0.42 +1.8
2,268,231 - CCNA_02118 0.42 +0.0
2,268,231 - CCNA_02118 0.42 -1.0

Or see this region's nucleotide sequence