Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02116 and CCNA_02117 are separated by 114 nucleotides CCNA_02117 and CCNA_02118 are separated by 82 nucleotides
CCNA_02116: CCNA_02116 - hypothetical protein, at 2,265,728 to 2,266,525
_02116
CCNA_02117: CCNA_02117 - polyketide cyclase/lipid transport protein, at 2,266,640 to 2,267,236
_02117
CCNA_02118: CCNA_02118 - ATP-dependent helicase, dinG family, at 2,267,319 to 2,269,502
_02118
Position (kb)
2266
2267
2268 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2265.708 kb on + strand at 2265.715 kb on - strand at 2265.726 kb on + strand at 2265.732 kb on - strand at 2265.739 kb on + strand at 2265.739 kb on + strand at 2265.741 kb on + strand at 2265.747 kb on - strand at 2265.753 kb on + strand at 2265.761 kb on - strand at 2265.855 kb on + strand, within CCNA_02116 at 2265.867 kb on + strand, within CCNA_02116 at 2265.892 kb on - strand, within CCNA_02116 at 2265.892 kb on - strand, within CCNA_02116 at 2265.922 kb on - strand, within CCNA_02116 at 2265.972 kb on - strand, within CCNA_02116 at 2265.976 kb on - strand, within CCNA_02116 at 2266.010 kb on + strand, within CCNA_02116 at 2266.018 kb on - strand, within CCNA_02116 at 2266.032 kb on - strand, within CCNA_02116 at 2266.032 kb on - strand, within CCNA_02116 at 2266.032 kb on - strand, within CCNA_02116 at 2266.041 kb on - strand, within CCNA_02116 at 2266.079 kb on - strand, within CCNA_02116 at 2266.084 kb on - strand, within CCNA_02116 at 2266.143 kb on + strand, within CCNA_02116 at 2266.151 kb on - strand, within CCNA_02116 at 2266.151 kb on - strand, within CCNA_02116 at 2266.151 kb on - strand, within CCNA_02116 at 2266.151 kb on - strand, within CCNA_02116 at 2266.166 kb on - strand, within CCNA_02116 at 2266.266 kb on - strand, within CCNA_02116 at 2266.344 kb on + strand, within CCNA_02116 at 2266.348 kb on + strand, within CCNA_02116 at 2266.352 kb on - strand, within CCNA_02116 at 2266.382 kb on - strand, within CCNA_02116 at 2266.388 kb on - strand, within CCNA_02116 at 2266.430 kb on + strand, within CCNA_02116 at 2266.711 kb on - strand, within CCNA_02117 at 2266.717 kb on + strand, within CCNA_02117 at 2266.720 kb on - strand, within CCNA_02117 at 2266.725 kb on - strand, within CCNA_02117 at 2266.790 kb on - strand, within CCNA_02117 at 2266.847 kb on + strand, within CCNA_02117 at 2266.847 kb on + strand, within CCNA_02117 at 2266.855 kb on - strand, within CCNA_02117 at 2266.910 kb on + strand, within CCNA_02117 at 2266.934 kb on + strand at 2266.942 kb on - strand, within CCNA_02117 at 2267.027 kb on - strand, within CCNA_02117 at 2267.111 kb on - strand, within CCNA_02117 at 2267.113 kb on + strand, within CCNA_02117 at 2267.130 kb on + strand, within CCNA_02117 at 2267.130 kb on + strand, within CCNA_02117 at 2267.130 kb on + strand, within CCNA_02117 at 2267.138 kb on - strand, within CCNA_02117 at 2267.138 kb on - strand, within CCNA_02117 at 2267.138 kb on - strand, within CCNA_02117 at 2267.149 kb on + strand, within CCNA_02117 at 2267.157 kb on - strand, within CCNA_02117 at 2267.157 kb on - strand, within CCNA_02117 at 2267.162 kb on + strand, within CCNA_02117 at 2267.163 kb on + strand, within CCNA_02117 at 2267.164 kb on - strand, within CCNA_02117 at 2267.165 kb on - strand, within CCNA_02117 at 2267.165 kb on - strand, within CCNA_02117 at 2267.170 kb on - strand, within CCNA_02117 at 2267.206 kb on - strand at 2267.236 kb on - strand at 2267.324 kb on - strand at 2267.381 kb on + strand at 2267.522 kb on + strand at 2267.537 kb on - strand at 2267.557 kb on + strand, within CCNA_02118 at 2267.565 kb on - strand, within CCNA_02118 at 2267.565 kb on - strand, within CCNA_02118 at 2267.578 kb on - strand, within CCNA_02118 at 2267.601 kb on - strand, within CCNA_02118 at 2267.630 kb on + strand, within CCNA_02118 at 2267.639 kb on - strand, within CCNA_02118 at 2267.666 kb on + strand, within CCNA_02118 at 2267.712 kb on - strand, within CCNA_02118 at 2267.712 kb on - strand, within CCNA_02118 at 2267.760 kb on - strand, within CCNA_02118 at 2267.778 kb on - strand, within CCNA_02118 at 2267.788 kb on + strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.796 kb on - strand, within CCNA_02118 at 2267.806 kb on + strand, within CCNA_02118 at 2267.806 kb on - strand, within CCNA_02118 at 2267.809 kb on + strand, within CCNA_02118 at 2267.879 kb on + strand, within CCNA_02118 at 2267.887 kb on - strand, within CCNA_02118 at 2267.939 kb on - strand, within CCNA_02118 at 2267.970 kb on + strand, within CCNA_02118 at 2267.996 kb on + strand, within CCNA_02118 at 2268.041 kb on - strand, within CCNA_02118 at 2268.041 kb on - strand, within CCNA_02118 at 2268.041 kb on - strand, within CCNA_02118 at 2268.046 kb on - strand, within CCNA_02118 at 2268.061 kb on - strand, within CCNA_02118 at 2268.104 kb on + strand, within CCNA_02118 at 2268.124 kb on - strand, within CCNA_02118 at 2268.140 kb on - strand, within CCNA_02118 at 2268.188 kb on - strand, within CCNA_02118 at 2268.231 kb on - strand, within CCNA_02118 at 2268.231 kb on - strand, within CCNA_02118 at 2268.231 kb on - strand, within CCNA_02118
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,265,708 + -2.7 2,265,715 - -1.0 2,265,726 + +1.5 2,265,732 - -1.6 2,265,739 + -1.0 2,265,739 + -1.1 2,265,741 + -1.0 2,265,747 - -1.7 2,265,753 + +1.4 2,265,761 - -3.0 2,265,855 + CCNA_02116 0.16 -0.5 2,265,867 + CCNA_02116 0.17 -1.0 2,265,892 - CCNA_02116 0.21 -2.8 2,265,892 - CCNA_02116 0.21 -3.4 2,265,922 - CCNA_02116 0.24 +2.5 2,265,972 - CCNA_02116 0.31 +2.8 2,265,976 - CCNA_02116 0.31 -3.0 2,266,010 + CCNA_02116 0.35 +1.0 2,266,018 - CCNA_02116 0.36 +1.8 2,266,032 - CCNA_02116 0.38 -1.7 2,266,032 - CCNA_02116 0.38 -1.1 2,266,032 - CCNA_02116 0.38 +0.1 2,266,041 - CCNA_02116 0.39 +1.0 2,266,079 - CCNA_02116 0.44 -2.1 2,266,084 - CCNA_02116 0.45 -1.7 2,266,143 + CCNA_02116 0.52 -1.0 2,266,151 - CCNA_02116 0.53 -2.4 2,266,151 - CCNA_02116 0.53 -1.4 2,266,151 - CCNA_02116 0.53 -2.3 2,266,151 - CCNA_02116 0.53 +0.0 2,266,166 - CCNA_02116 0.55 -0.2 2,266,266 - CCNA_02116 0.67 -1.3 2,266,344 + CCNA_02116 0.77 +0.2 2,266,348 + CCNA_02116 0.78 -0.8 2,266,352 - CCNA_02116 0.78 -1.2 2,266,382 - CCNA_02116 0.82 -0.1 2,266,388 - CCNA_02116 0.83 -0.3 2,266,430 + CCNA_02116 0.88 -1.3 2,266,711 - CCNA_02117 0.12 -0.3 2,266,717 + CCNA_02117 0.13 +0.3 2,266,720 - CCNA_02117 0.13 -1.6 2,266,725 - CCNA_02117 0.14 -2.1 2,266,790 - CCNA_02117 0.25 -1.0 2,266,847 + CCNA_02117 0.35 -1.5 2,266,847 + CCNA_02117 0.35 -1.8 2,266,855 - CCNA_02117 0.36 -1.3 2,266,910 + CCNA_02117 0.45 -0.9 2,266,934 + +3.4 2,266,942 - CCNA_02117 0.51 -1.1 2,267,027 - CCNA_02117 0.65 -2.0 2,267,111 - CCNA_02117 0.79 -1.1 2,267,113 + CCNA_02117 0.79 +0.6 2,267,130 + CCNA_02117 0.82 -0.4 2,267,130 + CCNA_02117 0.82 -0.9 2,267,130 + CCNA_02117 0.82 -1.4 2,267,138 - CCNA_02117 0.83 -1.7 2,267,138 - CCNA_02117 0.83 -1.5 2,267,138 - CCNA_02117 0.83 -0.1 2,267,149 + CCNA_02117 0.85 -1.5 2,267,157 - CCNA_02117 0.87 -0.0 2,267,157 - CCNA_02117 0.87 -1.5 2,267,162 + CCNA_02117 0.87 +4.4 2,267,163 + CCNA_02117 0.88 -0.6 2,267,164 - CCNA_02117 0.88 -0.4 2,267,165 - CCNA_02117 0.88 +0.4 2,267,165 - CCNA_02117 0.88 -0.3 2,267,170 - CCNA_02117 0.89 -1.0 2,267,206 - +0.9 2,267,236 - -0.3 2,267,324 - +0.6 2,267,381 + -1.6 2,267,522 + +0.6 2,267,537 - -0.5 2,267,557 + CCNA_02118 0.11 -2.3 2,267,565 - CCNA_02118 0.11 -0.0 2,267,565 - CCNA_02118 0.11 +0.1 2,267,578 - CCNA_02118 0.12 +0.4 2,267,601 - CCNA_02118 0.13 -0.9 2,267,630 + CCNA_02118 0.14 -0.6 2,267,639 - CCNA_02118 0.15 -0.4 2,267,666 + CCNA_02118 0.16 -1.1 2,267,712 - CCNA_02118 0.18 -0.9 2,267,712 - CCNA_02118 0.18 -0.8 2,267,760 - CCNA_02118 0.20 +2.4 2,267,778 - CCNA_02118 0.21 -0.5 2,267,788 + CCNA_02118 0.21 -0.1 2,267,796 - CCNA_02118 0.22 +0.4 2,267,796 - CCNA_02118 0.22 -0.8 2,267,796 - CCNA_02118 0.22 +1.6 2,267,806 + CCNA_02118 0.22 +0.1 2,267,806 - CCNA_02118 0.22 -0.1 2,267,809 + CCNA_02118 0.22 -1.1 2,267,879 + CCNA_02118 0.26 +0.1 2,267,887 - CCNA_02118 0.26 -1.1 2,267,939 - CCNA_02118 0.28 -0.7 2,267,970 + CCNA_02118 0.30 -0.8 2,267,996 + CCNA_02118 0.31 +1.8 2,268,041 - CCNA_02118 0.33 -1.4 2,268,041 - CCNA_02118 0.33 +0.1 2,268,041 - CCNA_02118 0.33 +0.1 2,268,046 - CCNA_02118 0.33 -1.0 2,268,061 - CCNA_02118 0.34 -2.5 2,268,104 + CCNA_02118 0.36 -1.4 2,268,124 - CCNA_02118 0.37 +0.1 2,268,140 - CCNA_02118 0.38 +0.4 2,268,188 - CCNA_02118 0.40 -1.0 2,268,231 - CCNA_02118 0.42 +1.8 2,268,231 - CCNA_02118 0.42 +0.0 2,268,231 - CCNA_02118 0.42 -1.0
Or see this region's nucleotide sequence