Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02083 and CCNA_02084 overlap by 4 nucleotides CCNA_02084 and CCNA_02085 overlap by 4 nucleotides CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides
CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535
_02083
CCNA_02084: CCNA_02084 - chromosome segregation and condensation protein fusion scpA, at 2,233,532 to 2,234,356
_02084
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
Position (kb)
2234
2235
2236 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2233.362 kb on + strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.375 kb on + strand, within CCNA_02083 at 2233.449 kb on - strand, within CCNA_02083 at 2233.493 kb on - strand at 2233.520 kb on + strand at 2233.520 kb on + strand at 2233.585 kb on - strand at 2233.595 kb on - strand at 2233.595 kb on - strand at 2233.622 kb on - strand, within CCNA_02084 at 2233.645 kb on + strand, within CCNA_02084 at 2233.724 kb on - strand, within CCNA_02084 at 2233.736 kb on - strand, within CCNA_02084 at 2233.741 kb on - strand, within CCNA_02084 at 2233.767 kb on - strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.864 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.906 kb on - strand, within CCNA_02084 at 2233.907 kb on - strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.917 kb on - strand, within CCNA_02084 at 2233.925 kb on + strand, within CCNA_02084 at 2233.995 kb on - strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.057 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.091 kb on + strand, within CCNA_02084 at 2234.094 kb on - strand, within CCNA_02084 at 2234.117 kb on - strand, within CCNA_02084 at 2234.117 kb on - strand, within CCNA_02084 at 2234.169 kb on + strand, within CCNA_02084 at 2234.219 kb on - strand, within CCNA_02084 at 2234.226 kb on - strand, within CCNA_02084 at 2234.265 kb on - strand, within CCNA_02084 at 2234.268 kb on - strand, within CCNA_02084 at 2234.327 kb on + strand at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand at 2234.538 kb on - strand, within CCNA_02085 at 2234.543 kb on - strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.610 kb on + strand, within CCNA_02085 at 2234.628 kb on - strand, within CCNA_02085 at 2234.754 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2235.054 kb on - strand, within CCNA_02085 at 2235.134 kb on - strand, within CCNA_02085 at 2235.227 kb on + strand, within CCNA_02085 at 2235.287 kb on - strand at 2235.287 kb on - strand at 2235.349 kb on + strand at 2236.095 kb on - strand, within CCNA_02086 at 2236.119 kb on - strand at 2236.165 kb on + strand at 2236.173 kb on - strand at 2236.190 kb on + strand at 2236.206 kb on - strand at 2236.252 kb on + strand at 2236.257 kb on + strand at 2236.260 kb on - strand at 2236.260 kb on - strand at 2236.260 kb on - strand at 2236.262 kb on + strand at 2236.275 kb on - strand at 2236.286 kb on - strand at 2236.311 kb on + strand at 2236.318 kb on - strand at 2236.353 kb on - strand at 2236.360 kb on + strand at 2236.360 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand at 2236.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,233,362 + CCNA_02083 0.74 +0.1 2,233,370 - CCNA_02083 0.75 -0.3 2,233,375 + CCNA_02083 0.76 +1.4 2,233,449 - CCNA_02083 0.87 -0.1 2,233,493 - +0.4 2,233,520 + +0.2 2,233,520 + -0.0 2,233,585 - -1.1 2,233,595 - +1.3 2,233,595 - -0.7 2,233,622 - CCNA_02084 0.11 -0.5 2,233,645 + CCNA_02084 0.14 +0.1 2,233,724 - CCNA_02084 0.23 -1.0 2,233,736 - CCNA_02084 0.25 +0.4 2,233,741 - CCNA_02084 0.25 -0.3 2,233,767 - CCNA_02084 0.28 +0.7 2,233,856 + CCNA_02084 0.39 -1.4 2,233,864 - CCNA_02084 0.40 +0.7 2,233,883 - CCNA_02084 0.43 +0.4 2,233,883 - CCNA_02084 0.43 -1.9 2,233,883 - CCNA_02084 0.43 +1.2 2,233,883 - CCNA_02084 0.43 +0.5 2,233,883 - CCNA_02084 0.43 +1.1 2,233,883 - CCNA_02084 0.43 -1.3 2,233,906 - CCNA_02084 0.45 +0.6 2,233,907 - CCNA_02084 0.45 +0.7 2,233,909 + CCNA_02084 0.46 +0.2 2,233,909 + CCNA_02084 0.46 +2.6 2,233,917 - CCNA_02084 0.47 -2.4 2,233,925 + CCNA_02084 0.48 -1.1 2,233,995 - CCNA_02084 0.56 +5.2 2,234,049 + CCNA_02084 0.63 +1.1 2,234,049 + CCNA_02084 0.63 +0.1 2,234,057 - CCNA_02084 0.64 +0.5 2,234,072 - CCNA_02084 0.65 -0.2 2,234,072 - CCNA_02084 0.65 -1.2 2,234,072 - CCNA_02084 0.65 +0.1 2,234,091 + CCNA_02084 0.68 +1.4 2,234,094 - CCNA_02084 0.68 +1.1 2,234,117 - CCNA_02084 0.71 -1.3 2,234,117 - CCNA_02084 0.71 -0.1 2,234,169 + CCNA_02084 0.77 +0.4 2,234,219 - CCNA_02084 0.83 -0.2 2,234,226 - CCNA_02084 0.84 -0.5 2,234,265 - CCNA_02084 0.89 -0.9 2,234,268 - CCNA_02084 0.89 -0.9 2,234,327 + -1.1 2,234,395 + -2.1 2,234,403 - +0.6 2,234,437 + +1.4 2,234,538 - CCNA_02085 0.18 -0.9 2,234,543 - CCNA_02085 0.18 -2.6 2,234,585 - CCNA_02085 0.22 -1.8 2,234,585 - CCNA_02085 0.22 -1.4 2,234,610 + CCNA_02085 0.25 +0.6 2,234,628 - CCNA_02085 0.26 -2.2 2,234,754 - CCNA_02085 0.39 -0.2 2,234,922 - CCNA_02085 0.55 -0.4 2,234,922 - CCNA_02085 0.55 -1.5 2,235,054 - CCNA_02085 0.68 -1.6 2,235,134 - CCNA_02085 0.75 -1.6 2,235,227 + CCNA_02085 0.84 -0.7 2,235,287 - -1.9 2,235,287 - -2.9 2,235,349 + +1.1 2,236,095 - CCNA_02086 0.88 -0.8 2,236,119 - +0.8 2,236,165 + -0.7 2,236,173 - -0.5 2,236,190 + -0.5 2,236,206 - -1.3 2,236,252 + -1.1 2,236,257 + -1.1 2,236,260 - +3.1 2,236,260 - -0.7 2,236,260 - +0.9 2,236,262 + +0.1 2,236,275 - -1.1 2,236,286 - -0.8 2,236,311 + +0.2 2,236,318 - +0.6 2,236,353 - +2.4 2,236,360 + -0.6 2,236,360 + -1.0 2,236,368 - +1.2 2,236,368 - +0.2 2,236,376 - +1.1 2,236,381 - -0.8
Or see this region's nucleotide sequence