Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02039 and CCNA_02040 are separated by 335 nucleotides CCNA_02040 and CCNA_02041 are separated by 78 nucleotides CCNA_02041 and CCNA_02042 are separated by 168 nucleotides
CCNA_02039: CCNA_02039 - ATP-dependent endopeptidase clp, ATP-binding subunit ClpX, at 2,183,866 to 2,185,128
_02039
CCNA_02040: CCNA_02040 - phosphoserine phosphatase, at 2,185,464 to 2,186,132
_02040
CCNA_02041: CCNA_02041 - ATP-dependent endopeptidase clp, proteolytic subunit ClpP, at 2,186,211 to 2,186,852
_02041
CCNA_02042: CCNA_02042 - trigger factor chaperone, at 2,187,021 to 2,188,385
_02042
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-1
0
1
2 at 2185.214 kb on - strand at 2185.260 kb on + strand at 2185.301 kb on + strand at 2185.316 kb on + strand at 2185.325 kb on - strand at 2185.371 kb on + strand at 2185.384 kb on - strand at 2185.394 kb on - strand at 2185.394 kb on - strand at 2185.431 kb on - strand at 2185.438 kb on + strand at 2185.472 kb on + strand at 2185.484 kb on + strand at 2185.485 kb on + strand at 2185.491 kb on + strand at 2185.541 kb on + strand, within CCNA_02040 at 2186.134 kb on - strand at 2186.173 kb on + strand at 2186.181 kb on - strand at 2186.187 kb on + strand at 2186.208 kb on + strand at 2186.208 kb on + strand at 2186.216 kb on - strand at 2186.216 kb on - strand at 2186.216 kb on - strand at 2186.234 kb on + strand at 2186.234 kb on + strand at 2186.923 kb on + strand at 2186.923 kb on + strand at 2186.923 kb on + strand at 2186.931 kb on - strand at 2186.942 kb on - strand at 2187.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,185,214 - -0.3 2,185,260 + -0.4 2,185,301 + -1.2 2,185,316 + +1.2 2,185,325 - -0.5 2,185,371 + -0.1 2,185,384 - +0.8 2,185,394 - +0.3 2,185,394 - +1.1 2,185,431 - -1.1 2,185,438 + +2.0 2,185,472 + -1.1 2,185,484 + +0.3 2,185,485 + +0.0 2,185,491 + +1.5 2,185,541 + CCNA_02040 0.12 -1.1 2,186,134 - +0.3 2,186,173 + +1.1 2,186,181 - +2.0 2,186,187 + -0.6 2,186,208 + -0.7 2,186,208 + -1.4 2,186,216 - +0.8 2,186,216 - +0.1 2,186,216 - -0.4 2,186,234 + -0.6 2,186,234 + +1.1 2,186,923 + -0.2 2,186,923 + +0.2 2,186,923 + -1.0 2,186,931 - +2.1 2,186,942 - -0.5 2,187,099 - +0.7
Or see this region's nucleotide sequence