Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02040

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02039 and CCNA_02040 are separated by 335 nucleotidesCCNA_02040 and CCNA_02041 are separated by 78 nucleotidesCCNA_02041 and CCNA_02042 are separated by 168 nucleotides CCNA_02039: CCNA_02039 - ATP-dependent endopeptidase clp, ATP-binding subunit ClpX, at 2,183,866 to 2,185,128 _02039 CCNA_02040: CCNA_02040 - phosphoserine phosphatase, at 2,185,464 to 2,186,132 _02040 CCNA_02041: CCNA_02041 - ATP-dependent endopeptidase clp, proteolytic subunit ClpP, at 2,186,211 to 2,186,852 _02041 CCNA_02042: CCNA_02042 - trigger factor chaperone, at 2,187,021 to 2,188,385 _02042 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -1 0 1 2at 2185.214 kb on - strandat 2185.260 kb on + strandat 2185.301 kb on + strandat 2185.316 kb on + strandat 2185.325 kb on - strandat 2185.371 kb on + strandat 2185.384 kb on - strandat 2185.394 kb on - strandat 2185.394 kb on - strandat 2185.431 kb on - strandat 2185.438 kb on + strandat 2185.472 kb on + strandat 2185.484 kb on + strandat 2185.485 kb on + strandat 2185.491 kb on + strandat 2185.541 kb on + strand, within CCNA_02040at 2186.134 kb on - strandat 2186.173 kb on + strandat 2186.181 kb on - strandat 2186.187 kb on + strandat 2186.208 kb on + strandat 2186.208 kb on + strandat 2186.216 kb on - strandat 2186.216 kb on - strandat 2186.216 kb on - strandat 2186.234 kb on + strandat 2186.234 kb on + strandat 2186.923 kb on + strandat 2186.923 kb on + strandat 2186.923 kb on + strandat 2186.931 kb on - strandat 2186.942 kb on - strandat 2187.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,185,214 - -0.3
2,185,260 + -0.4
2,185,301 + -1.2
2,185,316 + +1.2
2,185,325 - -0.5
2,185,371 + -0.1
2,185,384 - +0.8
2,185,394 - +0.3
2,185,394 - +1.1
2,185,431 - -1.1
2,185,438 + +2.0
2,185,472 + -1.1
2,185,484 + +0.3
2,185,485 + +0.0
2,185,491 + +1.5
2,185,541 + CCNA_02040 0.12 -1.1
2,186,134 - +0.3
2,186,173 + +1.1
2,186,181 - +2.0
2,186,187 + -0.6
2,186,208 + -0.7
2,186,208 + -1.4
2,186,216 - +0.8
2,186,216 - +0.1
2,186,216 - -0.4
2,186,234 + -0.6
2,186,234 + +1.1
2,186,923 + -0.2
2,186,923 + +0.2
2,186,923 + -1.0
2,186,931 - +2.1
2,186,942 - -0.5
2,187,099 - +0.7

Or see this region's nucleotide sequence