Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01971

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01970 and CCNA_01971 are separated by 139 nucleotidesCCNA_01971 and CCNA_01972 overlap by 1 nucleotides CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277 _01970 CCNA_01971: CCNA_01971 - peptidyl-prolyl cis-trans isomerase, at 2,115,417 to 2,117,381 _01971 CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922 _01972 Position (kb) 2115 2116 2117 2118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2114.484 kb on + strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.311 kb on - strandat 2115.344 kb on + strandat 2115.347 kb on + strandat 2115.349 kb on + strandat 2115.349 kb on + strandat 2115.355 kb on - strandat 2115.355 kb on - strandat 2115.396 kb on + strandat 2115.915 kb on + strand, within CCNA_01971at 2116.229 kb on + strand, within CCNA_01971at 2116.307 kb on + strand, within CCNA_01971at 2116.376 kb on + strand, within CCNA_01971at 2116.376 kb on + strand, within CCNA_01971at 2116.434 kb on + strand, within CCNA_01971at 2116.556 kb on + strand, within CCNA_01971at 2116.712 kb on + strand, within CCNA_01971at 2116.792 kb on - strand, within CCNA_01971at 2116.829 kb on + strand, within CCNA_01971at 2116.955 kb on + strand, within CCNA_01971at 2116.963 kb on + strand, within CCNA_01971at 2117.007 kb on + strand, within CCNA_01971at 2117.032 kb on + strand, within CCNA_01971at 2117.127 kb on + strand, within CCNA_01971at 2117.132 kb on + strand, within CCNA_01971at 2117.150 kb on + strand, within CCNA_01971at 2117.199 kb on + strandat 2117.226 kb on + strandat 2117.243 kb on + strandat 2117.276 kb on + strandat 2117.276 kb on + strandat 2117.276 kb on + strandat 2117.282 kb on + strandat 2117.306 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.339 kb on + strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.347 kb on - strandat 2117.352 kb on - strandat 2117.361 kb on + strandat 2117.417 kb on + strandat 2117.417 kb on + strandat 2117.425 kb on - strandat 2117.425 kb on - strandat 2117.452 kb on - strandat 2117.452 kb on - strandat 2117.452 kb on - strandat 2117.452 kb on - strandat 2117.480 kb on + strandat 2117.489 kb on + strandat 2117.509 kb on - strandat 2117.512 kb on + strandat 2117.512 kb on + strandat 2117.512 kb on + strandat 2117.520 kb on - strandat 2117.520 kb on - strandat 2117.520 kb on - strandat 2117.520 kb on - strandat 2117.591 kb on - strand, within CCNA_01972at 2117.678 kb on + strand, within CCNA_01972at 2117.678 kb on + strand, within CCNA_01972at 2117.686 kb on - strand, within CCNA_01972at 2117.715 kb on + strand, within CCNA_01972at 2117.817 kb on - strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.823 kb on + strand, within CCNA_01972at 2117.827 kb on + strand, within CCNA_01972at 2117.831 kb on - strand, within CCNA_01972at 2117.831 kb on - strand, within CCNA_01972at 2117.831 kb on - strand, within CCNA_01972at 2117.843 kb on + strandat 2117.878 kb on - strand, within CCNA_01972at 2117.880 kb on - strand, within CCNA_01972at 2117.968 kb on + strand, within CCNA_01972at 2117.977 kb on + strand, within CCNA_01972at 2117.985 kb on - strand, within CCNA_01972at 2117.987 kb on + strand, within CCNA_01972at 2117.995 kb on - strand, within CCNA_01972at 2118.055 kb on + strand, within CCNA_01972at 2118.072 kb on + strand, within CCNA_01972at 2118.080 kb on - strand, within CCNA_01972at 2118.080 kb on - strand, within CCNA_01972at 2118.105 kb on - strandat 2118.105 kb on - strand, within CCNA_01972at 2118.106 kb on - strand, within CCNA_01972at 2118.120 kb on + strand, within CCNA_01972at 2118.120 kb on + strand, within CCNA_01972at 2118.155 kb on + strand, within CCNA_01972at 2118.155 kb on + strand, within CCNA_01972at 2118.155 kb on + strand, within CCNA_01972at 2118.163 kb on - strand, within CCNA_01972at 2118.214 kb on - strand, within CCNA_01972at 2118.240 kb on + strand, within CCNA_01972at 2118.240 kb on + strand, within CCNA_01972at 2118.248 kb on - strand, within CCNA_01972at 2118.381 kb on + strand, within CCNA_01972at 2118.381 kb on + strand, within CCNA_01972

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,114,484 + -1.3
2,115,309 - +0.8
2,115,309 - +0.9
2,115,309 - +1.2
2,115,309 - -0.1
2,115,309 - +0.2
2,115,309 - +1.1
2,115,311 - +0.7
2,115,344 + -1.5
2,115,347 + -0.5
2,115,349 + -0.2
2,115,349 + +0.4
2,115,355 - +0.7
2,115,355 - -1.2
2,115,396 + +1.5
2,115,915 + CCNA_01971 0.25 -0.4
2,116,229 + CCNA_01971 0.41 -0.4
2,116,307 + CCNA_01971 0.45 -1.8
2,116,376 + CCNA_01971 0.49 -0.3
2,116,376 + CCNA_01971 0.49 +0.2
2,116,434 + CCNA_01971 0.52 -0.4
2,116,556 + CCNA_01971 0.58 -0.9
2,116,712 + CCNA_01971 0.66 -0.4
2,116,792 - CCNA_01971 0.70 -0.5
2,116,829 + CCNA_01971 0.72 +0.1
2,116,955 + CCNA_01971 0.78 -0.1
2,116,963 + CCNA_01971 0.79 -1.3
2,117,007 + CCNA_01971 0.81 +0.2
2,117,032 + CCNA_01971 0.82 -0.5
2,117,127 + CCNA_01971 0.87 -1.5
2,117,132 + CCNA_01971 0.87 +0.9
2,117,150 + CCNA_01971 0.88 -1.9
2,117,199 + -1.7
2,117,226 + +1.6
2,117,243 + +0.7
2,117,276 + -2.1
2,117,276 + -0.2
2,117,276 + -0.5
2,117,282 + +1.8
2,117,306 + +0.0
2,117,339 + -0.0
2,117,339 + -0.3
2,117,339 + +1.8
2,117,339 + -2.4
2,117,339 + -0.8
2,117,339 + +0.7
2,117,339 + -0.1
2,117,339 + +0.2
2,117,339 + +0.3
2,117,339 + +0.3
2,117,347 - +0.9
2,117,347 - -1.0
2,117,347 - -0.3
2,117,347 - -0.2
2,117,347 - +1.2
2,117,352 - +0.9
2,117,361 + -1.1
2,117,417 + +0.2
2,117,417 + -0.6
2,117,425 - -0.7
2,117,425 - -3.9
2,117,452 - +0.7
2,117,452 - -0.9
2,117,452 - +1.5
2,117,452 - +1.1
2,117,480 + +0.1
2,117,489 + -1.7
2,117,509 - +1.4
2,117,512 + -2.0
2,117,512 + -1.5
2,117,512 + -0.2
2,117,520 - -1.0
2,117,520 - -1.0
2,117,520 - +0.9
2,117,520 - +1.9
2,117,591 - CCNA_01972 0.14 -3.0
2,117,678 + CCNA_01972 0.19 +0.8
2,117,678 + CCNA_01972 0.19 +0.3
2,117,686 - CCNA_01972 0.20 +3.3
2,117,715 + CCNA_01972 0.22 -1.0
2,117,817 - CCNA_01972 0.28 -1.2
2,117,823 + CCNA_01972 0.29 +0.1
2,117,823 + CCNA_01972 0.29 +2.1
2,117,827 + CCNA_01972 0.29 -0.9
2,117,831 - CCNA_01972 0.29 +1.5
2,117,831 - CCNA_01972 0.29 -0.5
2,117,831 - CCNA_01972 0.29 -0.8
2,117,843 + +1.9
2,117,878 - CCNA_01972 0.32 -0.9
2,117,880 - CCNA_01972 0.32 +0.3
2,117,968 + CCNA_01972 0.38 -1.0
2,117,977 + CCNA_01972 0.39 +1.2
2,117,985 - CCNA_01972 0.39 -0.7
2,117,987 + CCNA_01972 0.39 +1.3
2,117,995 - CCNA_01972 0.40 +0.2
2,118,055 + CCNA_01972 0.44 +0.5
2,118,072 + CCNA_01972 0.45 -0.4
2,118,080 - CCNA_01972 0.45 -2.2
2,118,080 - CCNA_01972 0.45 +0.5
2,118,105 - +2.5
2,118,105 - CCNA_01972 0.47 -1.3
2,118,106 - CCNA_01972 0.47 +0.3
2,118,120 + CCNA_01972 0.48 -0.2
2,118,120 + CCNA_01972 0.48 -0.9
2,118,155 + CCNA_01972 0.50 +1.3
2,118,155 + CCNA_01972 0.50 +0.2
2,118,155 + CCNA_01972 0.50 +0.0
2,118,163 - CCNA_01972 0.51 +0.2
2,118,214 - CCNA_01972 0.54 +1.7
2,118,240 + CCNA_01972 0.56 +0.1
2,118,240 + CCNA_01972 0.56 +1.8
2,118,248 - CCNA_01972 0.56 -1.2
2,118,381 + CCNA_01972 0.65 -1.4
2,118,381 + CCNA_01972 0.65 -0.4

Or see this region's nucleotide sequence