Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01970 and CCNA_01971 are separated by 139 nucleotides CCNA_01971 and CCNA_01972 overlap by 1 nucleotides
CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277
_01970
CCNA_01971: CCNA_01971 - peptidyl-prolyl cis-trans isomerase, at 2,115,417 to 2,117,381
_01971
CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922
_01972
Position (kb)
2115
2116
2117
2118 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2114.484 kb on + strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.311 kb on - strand at 2115.344 kb on + strand at 2115.347 kb on + strand at 2115.349 kb on + strand at 2115.349 kb on + strand at 2115.355 kb on - strand at 2115.355 kb on - strand at 2115.396 kb on + strand at 2115.915 kb on + strand, within CCNA_01971 at 2116.229 kb on + strand, within CCNA_01971 at 2116.307 kb on + strand, within CCNA_01971 at 2116.376 kb on + strand, within CCNA_01971 at 2116.376 kb on + strand, within CCNA_01971 at 2116.434 kb on + strand, within CCNA_01971 at 2116.556 kb on + strand, within CCNA_01971 at 2116.712 kb on + strand, within CCNA_01971 at 2116.792 kb on - strand, within CCNA_01971 at 2116.829 kb on + strand, within CCNA_01971 at 2116.955 kb on + strand, within CCNA_01971 at 2116.963 kb on + strand, within CCNA_01971 at 2117.007 kb on + strand, within CCNA_01971 at 2117.032 kb on + strand, within CCNA_01971 at 2117.127 kb on + strand, within CCNA_01971 at 2117.132 kb on + strand, within CCNA_01971 at 2117.150 kb on + strand, within CCNA_01971 at 2117.199 kb on + strand at 2117.226 kb on + strand at 2117.243 kb on + strand at 2117.276 kb on + strand at 2117.276 kb on + strand at 2117.276 kb on + strand at 2117.282 kb on + strand at 2117.306 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.339 kb on + strand at 2117.347 kb on - strand at 2117.347 kb on - strand at 2117.347 kb on - strand at 2117.347 kb on - strand at 2117.347 kb on - strand at 2117.352 kb on - strand at 2117.361 kb on + strand at 2117.417 kb on + strand at 2117.417 kb on + strand at 2117.425 kb on - strand at 2117.425 kb on - strand at 2117.452 kb on - strand at 2117.452 kb on - strand at 2117.452 kb on - strand at 2117.452 kb on - strand at 2117.480 kb on + strand at 2117.489 kb on + strand at 2117.509 kb on - strand at 2117.512 kb on + strand at 2117.512 kb on + strand at 2117.512 kb on + strand at 2117.520 kb on - strand at 2117.520 kb on - strand at 2117.520 kb on - strand at 2117.520 kb on - strand at 2117.591 kb on - strand, within CCNA_01972 at 2117.678 kb on + strand, within CCNA_01972 at 2117.678 kb on + strand, within CCNA_01972 at 2117.686 kb on - strand, within CCNA_01972 at 2117.715 kb on + strand, within CCNA_01972 at 2117.817 kb on - strand, within CCNA_01972 at 2117.823 kb on + strand, within CCNA_01972 at 2117.823 kb on + strand, within CCNA_01972 at 2117.827 kb on + strand, within CCNA_01972 at 2117.831 kb on - strand, within CCNA_01972 at 2117.831 kb on - strand, within CCNA_01972 at 2117.831 kb on - strand, within CCNA_01972 at 2117.843 kb on + strand at 2117.878 kb on - strand, within CCNA_01972 at 2117.880 kb on - strand, within CCNA_01972 at 2117.968 kb on + strand, within CCNA_01972 at 2117.977 kb on + strand, within CCNA_01972 at 2117.985 kb on - strand, within CCNA_01972 at 2117.987 kb on + strand, within CCNA_01972 at 2117.995 kb on - strand, within CCNA_01972 at 2118.055 kb on + strand, within CCNA_01972 at 2118.072 kb on + strand, within CCNA_01972 at 2118.080 kb on - strand, within CCNA_01972 at 2118.080 kb on - strand, within CCNA_01972 at 2118.105 kb on - strand at 2118.105 kb on - strand, within CCNA_01972 at 2118.106 kb on - strand, within CCNA_01972 at 2118.120 kb on + strand, within CCNA_01972 at 2118.120 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.163 kb on - strand, within CCNA_01972 at 2118.214 kb on - strand, within CCNA_01972 at 2118.240 kb on + strand, within CCNA_01972 at 2118.240 kb on + strand, within CCNA_01972 at 2118.248 kb on - strand, within CCNA_01972 at 2118.381 kb on + strand, within CCNA_01972 at 2118.381 kb on + strand, within CCNA_01972
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,114,484 + -1.3 2,115,309 - +0.8 2,115,309 - +0.9 2,115,309 - +1.2 2,115,309 - -0.1 2,115,309 - +0.2 2,115,309 - +1.1 2,115,311 - +0.7 2,115,344 + -1.5 2,115,347 + -0.5 2,115,349 + -0.2 2,115,349 + +0.4 2,115,355 - +0.7 2,115,355 - -1.2 2,115,396 + +1.5 2,115,915 + CCNA_01971 0.25 -0.4 2,116,229 + CCNA_01971 0.41 -0.4 2,116,307 + CCNA_01971 0.45 -1.8 2,116,376 + CCNA_01971 0.49 -0.3 2,116,376 + CCNA_01971 0.49 +0.2 2,116,434 + CCNA_01971 0.52 -0.4 2,116,556 + CCNA_01971 0.58 -0.9 2,116,712 + CCNA_01971 0.66 -0.4 2,116,792 - CCNA_01971 0.70 -0.5 2,116,829 + CCNA_01971 0.72 +0.1 2,116,955 + CCNA_01971 0.78 -0.1 2,116,963 + CCNA_01971 0.79 -1.3 2,117,007 + CCNA_01971 0.81 +0.2 2,117,032 + CCNA_01971 0.82 -0.5 2,117,127 + CCNA_01971 0.87 -1.5 2,117,132 + CCNA_01971 0.87 +0.9 2,117,150 + CCNA_01971 0.88 -1.9 2,117,199 + -1.7 2,117,226 + +1.6 2,117,243 + +0.7 2,117,276 + -2.1 2,117,276 + -0.2 2,117,276 + -0.5 2,117,282 + +1.8 2,117,306 + +0.0 2,117,339 + -0.0 2,117,339 + -0.3 2,117,339 + +1.8 2,117,339 + -2.4 2,117,339 + -0.8 2,117,339 + +0.7 2,117,339 + -0.1 2,117,339 + +0.2 2,117,339 + +0.3 2,117,339 + +0.3 2,117,347 - +0.9 2,117,347 - -1.0 2,117,347 - -0.3 2,117,347 - -0.2 2,117,347 - +1.2 2,117,352 - +0.9 2,117,361 + -1.1 2,117,417 + +0.2 2,117,417 + -0.6 2,117,425 - -0.7 2,117,425 - -3.9 2,117,452 - +0.7 2,117,452 - -0.9 2,117,452 - +1.5 2,117,452 - +1.1 2,117,480 + +0.1 2,117,489 + -1.7 2,117,509 - +1.4 2,117,512 + -2.0 2,117,512 + -1.5 2,117,512 + -0.2 2,117,520 - -1.0 2,117,520 - -1.0 2,117,520 - +0.9 2,117,520 - +1.9 2,117,591 - CCNA_01972 0.14 -3.0 2,117,678 + CCNA_01972 0.19 +0.8 2,117,678 + CCNA_01972 0.19 +0.3 2,117,686 - CCNA_01972 0.20 +3.3 2,117,715 + CCNA_01972 0.22 -1.0 2,117,817 - CCNA_01972 0.28 -1.2 2,117,823 + CCNA_01972 0.29 +0.1 2,117,823 + CCNA_01972 0.29 +2.1 2,117,827 + CCNA_01972 0.29 -0.9 2,117,831 - CCNA_01972 0.29 +1.5 2,117,831 - CCNA_01972 0.29 -0.5 2,117,831 - CCNA_01972 0.29 -0.8 2,117,843 + +1.9 2,117,878 - CCNA_01972 0.32 -0.9 2,117,880 - CCNA_01972 0.32 +0.3 2,117,968 + CCNA_01972 0.38 -1.0 2,117,977 + CCNA_01972 0.39 +1.2 2,117,985 - CCNA_01972 0.39 -0.7 2,117,987 + CCNA_01972 0.39 +1.3 2,117,995 - CCNA_01972 0.40 +0.2 2,118,055 + CCNA_01972 0.44 +0.5 2,118,072 + CCNA_01972 0.45 -0.4 2,118,080 - CCNA_01972 0.45 -2.2 2,118,080 - CCNA_01972 0.45 +0.5 2,118,105 - +2.5 2,118,105 - CCNA_01972 0.47 -1.3 2,118,106 - CCNA_01972 0.47 +0.3 2,118,120 + CCNA_01972 0.48 -0.2 2,118,120 + CCNA_01972 0.48 -0.9 2,118,155 + CCNA_01972 0.50 +1.3 2,118,155 + CCNA_01972 0.50 +0.2 2,118,155 + CCNA_01972 0.50 +0.0 2,118,163 - CCNA_01972 0.51 +0.2 2,118,214 - CCNA_01972 0.54 +1.7 2,118,240 + CCNA_01972 0.56 +0.1 2,118,240 + CCNA_01972 0.56 +1.8 2,118,248 - CCNA_01972 0.56 -1.2 2,118,381 + CCNA_01972 0.65 -1.4 2,118,381 + CCNA_01972 0.65 -0.4
Or see this region's nucleotide sequence