Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01962 and CCNA_01963 overlap by 64 nucleotides CCNA_01963 and CCNA_01964 are separated by 4 nucleotides CCNA_01964 and CCNA_01966 are separated by 279 nucleotides
CCNA_01962: CCNA_01962 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,106,314 to 2,106,967
_01962
CCNA_01963: CCNA_01963 - hypothetical protein, at 2,106,904 to 2,107,542
_01963
CCNA_01964: CCNA_01964 - NADH dehydrogenase, at 2,107,547 to 2,107,942
_01964
CCNA_01966: CCNA_01966 - vitamin B12-dependent ribonucleotide reductase, at 2,108,222 to 2,110,945
_01966
Position (kb)
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2106.554 kb on - strand, within CCNA_01962 at 2106.603 kb on - strand at 2106.615 kb on - strand, within CCNA_01962 at 2106.703 kb on - strand, within CCNA_01962 at 2106.723 kb on - strand, within CCNA_01962 at 2106.723 kb on - strand, within CCNA_01962 at 2106.783 kb on + strand, within CCNA_01962 at 2106.783 kb on + strand, within CCNA_01962 at 2106.813 kb on - strand, within CCNA_01962 at 2106.874 kb on + strand, within CCNA_01962 at 2106.874 kb on + strand, within CCNA_01962 at 2106.882 kb on - strand, within CCNA_01962 at 2106.947 kb on - strand at 2106.970 kb on - strand, within CCNA_01963 at 2106.976 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.009 kb on + strand, within CCNA_01963 at 2107.017 kb on - strand, within CCNA_01963 at 2107.027 kb on - strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.061 kb on + strand, within CCNA_01963 at 2107.069 kb on - strand, within CCNA_01963 at 2107.069 kb on - strand, within CCNA_01963 at 2107.165 kb on - strand, within CCNA_01963 at 2107.165 kb on - strand, within CCNA_01963 at 2107.214 kb on + strand, within CCNA_01963 at 2107.222 kb on - strand, within CCNA_01963 at 2107.354 kb on - strand, within CCNA_01963 at 2107.360 kb on + strand, within CCNA_01963 at 2107.506 kb on - strand at 2107.552 kb on - strand at 2107.612 kb on - strand, within CCNA_01964 at 2107.631 kb on - strand, within CCNA_01964 at 2108.012 kb on - strand at 2108.064 kb on - strand at 2108.064 kb on - strand at 2108.064 kb on - strand at 2108.126 kb on - strand at 2108.127 kb on - strand at 2108.145 kb on - strand at 2108.147 kb on + strand at 2108.155 kb on - strand at 2108.246 kb on + strand at 2108.282 kb on - strand at 2108.330 kb on - strand at 2108.336 kb on + strand at 2108.336 kb on + strand at 2108.369 kb on + strand at 2108.401 kb on + strand at 2108.436 kb on + strand at 2108.491 kb on - strand at 2108.493 kb on + strand at 2108.511 kb on - strand, within CCNA_01966 at 2108.511 kb on - strand, within CCNA_01966 at 2108.516 kb on + strand, within CCNA_01966 at 2108.517 kb on + strand, within CCNA_01966 at 2108.545 kb on - strand, within CCNA_01966 at 2108.556 kb on + strand, within CCNA_01966 at 2108.595 kb on + strand, within CCNA_01966 at 2108.595 kb on + strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.603 kb on - strand, within CCNA_01966 at 2108.627 kb on + strand, within CCNA_01966 at 2108.635 kb on - strand, within CCNA_01966 at 2108.642 kb on + strand, within CCNA_01966 at 2108.642 kb on + strand, within CCNA_01966 at 2108.652 kb on - strand, within CCNA_01966 at 2108.652 kb on - strand, within CCNA_01966 at 2108.655 kb on + strand, within CCNA_01966 at 2108.670 kb on + strand, within CCNA_01966 at 2108.673 kb on - strand, within CCNA_01966 at 2108.686 kb on - strand, within CCNA_01966 at 2108.688 kb on + strand, within CCNA_01966 at 2108.688 kb on + strand, within CCNA_01966 at 2108.691 kb on - strand, within CCNA_01966 at 2108.701 kb on - strand, within CCNA_01966 at 2108.701 kb on - strand, within CCNA_01966 at 2108.732 kb on + strand, within CCNA_01966 at 2108.737 kb on + strand, within CCNA_01966 at 2108.737 kb on + strand, within CCNA_01966 at 2108.737 kb on + strand, within CCNA_01966 at 2108.745 kb on - strand, within CCNA_01966 at 2108.748 kb on + strand, within CCNA_01966 at 2108.784 kb on - strand, within CCNA_01966 at 2108.815 kb on + strand, within CCNA_01966 at 2108.823 kb on - strand, within CCNA_01966 at 2108.843 kb on - strand, within CCNA_01966 at 2108.930 kb on + strand, within CCNA_01966 at 2108.941 kb on - strand, within CCNA_01966
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,106,554 - CCNA_01962 0.37 +0.8 2,106,603 - +2.5 2,106,615 - CCNA_01962 0.46 +0.1 2,106,703 - CCNA_01962 0.59 -1.1 2,106,723 - CCNA_01962 0.63 -1.5 2,106,723 - CCNA_01962 0.63 -1.2 2,106,783 + CCNA_01962 0.72 -1.0 2,106,783 + CCNA_01962 0.72 +0.9 2,106,813 - CCNA_01962 0.76 +0.6 2,106,874 + CCNA_01962 0.86 +1.9 2,106,874 + CCNA_01962 0.86 +1.6 2,106,882 - CCNA_01962 0.87 -0.1 2,106,947 - +0.7 2,106,970 - CCNA_01963 0.10 +0.2 2,106,976 + CCNA_01963 0.11 +1.7 2,107,009 + CCNA_01963 0.16 -0.5 2,107,009 + CCNA_01963 0.16 +0.9 2,107,009 + CCNA_01963 0.16 +0.3 2,107,017 - CCNA_01963 0.18 +0.6 2,107,027 - CCNA_01963 0.19 -0.2 2,107,061 + CCNA_01963 0.25 -0.2 2,107,061 + CCNA_01963 0.25 -1.6 2,107,061 + CCNA_01963 0.25 +1.0 2,107,069 - CCNA_01963 0.26 +0.7 2,107,069 - CCNA_01963 0.26 +0.3 2,107,165 - CCNA_01963 0.41 -1.2 2,107,165 - CCNA_01963 0.41 +1.0 2,107,214 + CCNA_01963 0.49 +0.1 2,107,222 - CCNA_01963 0.50 +3.2 2,107,354 - CCNA_01963 0.70 +0.1 2,107,360 + CCNA_01963 0.71 -0.3 2,107,506 - -0.0 2,107,552 - +0.1 2,107,612 - CCNA_01964 0.16 +3.1 2,107,631 - CCNA_01964 0.21 -2.4 2,108,012 - +0.7 2,108,064 - +0.2 2,108,064 - +1.8 2,108,064 - +0.7 2,108,126 - -0.7 2,108,127 - +0.2 2,108,145 - -0.7 2,108,147 + +1.4 2,108,155 - +0.4 2,108,246 + +1.1 2,108,282 - -1.8 2,108,330 - -0.1 2,108,336 + -0.7 2,108,336 + +1.9 2,108,369 + +0.4 2,108,401 + +0.5 2,108,436 + +1.4 2,108,491 - -0.3 2,108,493 + +0.8 2,108,511 - CCNA_01966 0.11 -0.9 2,108,511 - CCNA_01966 0.11 -0.5 2,108,516 + CCNA_01966 0.11 +0.3 2,108,517 + CCNA_01966 0.11 -0.2 2,108,545 - CCNA_01966 0.12 +0.3 2,108,556 + CCNA_01966 0.12 -0.6 2,108,595 + CCNA_01966 0.14 +0.7 2,108,595 + CCNA_01966 0.14 -0.9 2,108,603 - CCNA_01966 0.14 +1.5 2,108,603 - CCNA_01966 0.14 +0.1 2,108,603 - CCNA_01966 0.14 +0.6 2,108,603 - CCNA_01966 0.14 +1.3 2,108,603 - CCNA_01966 0.14 +0.2 2,108,603 - CCNA_01966 0.14 -0.3 2,108,627 + CCNA_01966 0.15 +0.0 2,108,635 - CCNA_01966 0.15 -1.9 2,108,642 + CCNA_01966 0.15 +0.1 2,108,642 + CCNA_01966 0.15 +0.9 2,108,652 - CCNA_01966 0.16 +0.3 2,108,652 - CCNA_01966 0.16 -1.9 2,108,655 + CCNA_01966 0.16 -0.4 2,108,670 + CCNA_01966 0.16 -2.3 2,108,673 - CCNA_01966 0.17 -0.1 2,108,686 - CCNA_01966 0.17 -2.5 2,108,688 + CCNA_01966 0.17 -0.1 2,108,688 + CCNA_01966 0.17 -1.1 2,108,691 - CCNA_01966 0.17 -1.6 2,108,701 - CCNA_01966 0.18 -0.1 2,108,701 - CCNA_01966 0.18 -0.7 2,108,732 + CCNA_01966 0.19 +1.1 2,108,737 + CCNA_01966 0.19 +0.5 2,108,737 + CCNA_01966 0.19 -0.2 2,108,737 + CCNA_01966 0.19 -2.6 2,108,745 - CCNA_01966 0.19 -2.2 2,108,748 + CCNA_01966 0.19 +0.3 2,108,784 - CCNA_01966 0.21 +0.3 2,108,815 + CCNA_01966 0.22 -1.2 2,108,823 - CCNA_01966 0.22 -0.8 2,108,843 - CCNA_01966 0.23 -1.4 2,108,930 + CCNA_01966 0.26 +0.8 2,108,941 - CCNA_01966 0.26 -1.2
Or see this region's nucleotide sequence