Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01964

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01962 and CCNA_01963 overlap by 64 nucleotidesCCNA_01963 and CCNA_01964 are separated by 4 nucleotidesCCNA_01964 and CCNA_01966 are separated by 279 nucleotides CCNA_01962: CCNA_01962 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,106,314 to 2,106,967 _01962 CCNA_01963: CCNA_01963 - hypothetical protein, at 2,106,904 to 2,107,542 _01963 CCNA_01964: CCNA_01964 - NADH dehydrogenase, at 2,107,547 to 2,107,942 _01964 CCNA_01966: CCNA_01966 - vitamin B12-dependent ribonucleotide reductase, at 2,108,222 to 2,110,945 _01966 Position (kb) 2107 2108Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2106.554 kb on - strand, within CCNA_01962at 2106.603 kb on - strandat 2106.615 kb on - strand, within CCNA_01962at 2106.703 kb on - strand, within CCNA_01962at 2106.723 kb on - strand, within CCNA_01962at 2106.723 kb on - strand, within CCNA_01962at 2106.783 kb on + strand, within CCNA_01962at 2106.783 kb on + strand, within CCNA_01962at 2106.813 kb on - strand, within CCNA_01962at 2106.874 kb on + strand, within CCNA_01962at 2106.874 kb on + strand, within CCNA_01962at 2106.882 kb on - strand, within CCNA_01962at 2106.947 kb on - strandat 2106.970 kb on - strand, within CCNA_01963at 2106.976 kb on + strand, within CCNA_01963at 2107.009 kb on + strand, within CCNA_01963at 2107.009 kb on + strand, within CCNA_01963at 2107.009 kb on + strand, within CCNA_01963at 2107.017 kb on - strand, within CCNA_01963at 2107.027 kb on - strand, within CCNA_01963at 2107.061 kb on + strand, within CCNA_01963at 2107.061 kb on + strand, within CCNA_01963at 2107.061 kb on + strand, within CCNA_01963at 2107.069 kb on - strand, within CCNA_01963at 2107.069 kb on - strand, within CCNA_01963at 2107.165 kb on - strand, within CCNA_01963at 2107.165 kb on - strand, within CCNA_01963at 2107.214 kb on + strand, within CCNA_01963at 2107.222 kb on - strand, within CCNA_01963at 2107.354 kb on - strand, within CCNA_01963at 2107.360 kb on + strand, within CCNA_01963at 2107.506 kb on - strandat 2107.552 kb on - strandat 2107.612 kb on - strand, within CCNA_01964at 2107.631 kb on - strand, within CCNA_01964at 2108.012 kb on - strandat 2108.064 kb on - strandat 2108.064 kb on - strandat 2108.064 kb on - strandat 2108.126 kb on - strandat 2108.127 kb on - strandat 2108.145 kb on - strandat 2108.147 kb on + strandat 2108.155 kb on - strandat 2108.246 kb on + strandat 2108.282 kb on - strandat 2108.330 kb on - strandat 2108.336 kb on + strandat 2108.336 kb on + strandat 2108.369 kb on + strandat 2108.401 kb on + strandat 2108.436 kb on + strandat 2108.491 kb on - strandat 2108.493 kb on + strandat 2108.511 kb on - strand, within CCNA_01966at 2108.511 kb on - strand, within CCNA_01966at 2108.516 kb on + strand, within CCNA_01966at 2108.517 kb on + strand, within CCNA_01966at 2108.545 kb on - strand, within CCNA_01966at 2108.556 kb on + strand, within CCNA_01966at 2108.595 kb on + strand, within CCNA_01966at 2108.595 kb on + strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.603 kb on - strand, within CCNA_01966at 2108.627 kb on + strand, within CCNA_01966at 2108.635 kb on - strand, within CCNA_01966at 2108.642 kb on + strand, within CCNA_01966at 2108.642 kb on + strand, within CCNA_01966at 2108.652 kb on - strand, within CCNA_01966at 2108.652 kb on - strand, within CCNA_01966at 2108.655 kb on + strand, within CCNA_01966at 2108.670 kb on + strand, within CCNA_01966at 2108.673 kb on - strand, within CCNA_01966at 2108.686 kb on - strand, within CCNA_01966at 2108.688 kb on + strand, within CCNA_01966at 2108.688 kb on + strand, within CCNA_01966at 2108.691 kb on - strand, within CCNA_01966at 2108.701 kb on - strand, within CCNA_01966at 2108.701 kb on - strand, within CCNA_01966at 2108.732 kb on + strand, within CCNA_01966at 2108.737 kb on + strand, within CCNA_01966at 2108.737 kb on + strand, within CCNA_01966at 2108.737 kb on + strand, within CCNA_01966at 2108.745 kb on - strand, within CCNA_01966at 2108.748 kb on + strand, within CCNA_01966at 2108.784 kb on - strand, within CCNA_01966at 2108.815 kb on + strand, within CCNA_01966at 2108.823 kb on - strand, within CCNA_01966at 2108.843 kb on - strand, within CCNA_01966at 2108.930 kb on + strand, within CCNA_01966at 2108.941 kb on - strand, within CCNA_01966

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,106,554 - CCNA_01962 0.37 +0.8
2,106,603 - +2.5
2,106,615 - CCNA_01962 0.46 +0.1
2,106,703 - CCNA_01962 0.59 -1.1
2,106,723 - CCNA_01962 0.63 -1.5
2,106,723 - CCNA_01962 0.63 -1.2
2,106,783 + CCNA_01962 0.72 -1.0
2,106,783 + CCNA_01962 0.72 +0.9
2,106,813 - CCNA_01962 0.76 +0.6
2,106,874 + CCNA_01962 0.86 +1.9
2,106,874 + CCNA_01962 0.86 +1.6
2,106,882 - CCNA_01962 0.87 -0.1
2,106,947 - +0.7
2,106,970 - CCNA_01963 0.10 +0.2
2,106,976 + CCNA_01963 0.11 +1.7
2,107,009 + CCNA_01963 0.16 -0.5
2,107,009 + CCNA_01963 0.16 +0.9
2,107,009 + CCNA_01963 0.16 +0.3
2,107,017 - CCNA_01963 0.18 +0.6
2,107,027 - CCNA_01963 0.19 -0.2
2,107,061 + CCNA_01963 0.25 -0.2
2,107,061 + CCNA_01963 0.25 -1.6
2,107,061 + CCNA_01963 0.25 +1.0
2,107,069 - CCNA_01963 0.26 +0.7
2,107,069 - CCNA_01963 0.26 +0.3
2,107,165 - CCNA_01963 0.41 -1.2
2,107,165 - CCNA_01963 0.41 +1.0
2,107,214 + CCNA_01963 0.49 +0.1
2,107,222 - CCNA_01963 0.50 +3.2
2,107,354 - CCNA_01963 0.70 +0.1
2,107,360 + CCNA_01963 0.71 -0.3
2,107,506 - -0.0
2,107,552 - +0.1
2,107,612 - CCNA_01964 0.16 +3.1
2,107,631 - CCNA_01964 0.21 -2.4
2,108,012 - +0.7
2,108,064 - +0.2
2,108,064 - +1.8
2,108,064 - +0.7
2,108,126 - -0.7
2,108,127 - +0.2
2,108,145 - -0.7
2,108,147 + +1.4
2,108,155 - +0.4
2,108,246 + +1.1
2,108,282 - -1.8
2,108,330 - -0.1
2,108,336 + -0.7
2,108,336 + +1.9
2,108,369 + +0.4
2,108,401 + +0.5
2,108,436 + +1.4
2,108,491 - -0.3
2,108,493 + +0.8
2,108,511 - CCNA_01966 0.11 -0.9
2,108,511 - CCNA_01966 0.11 -0.5
2,108,516 + CCNA_01966 0.11 +0.3
2,108,517 + CCNA_01966 0.11 -0.2
2,108,545 - CCNA_01966 0.12 +0.3
2,108,556 + CCNA_01966 0.12 -0.6
2,108,595 + CCNA_01966 0.14 +0.7
2,108,595 + CCNA_01966 0.14 -0.9
2,108,603 - CCNA_01966 0.14 +1.5
2,108,603 - CCNA_01966 0.14 +0.1
2,108,603 - CCNA_01966 0.14 +0.6
2,108,603 - CCNA_01966 0.14 +1.3
2,108,603 - CCNA_01966 0.14 +0.2
2,108,603 - CCNA_01966 0.14 -0.3
2,108,627 + CCNA_01966 0.15 +0.0
2,108,635 - CCNA_01966 0.15 -1.9
2,108,642 + CCNA_01966 0.15 +0.1
2,108,642 + CCNA_01966 0.15 +0.9
2,108,652 - CCNA_01966 0.16 +0.3
2,108,652 - CCNA_01966 0.16 -1.9
2,108,655 + CCNA_01966 0.16 -0.4
2,108,670 + CCNA_01966 0.16 -2.3
2,108,673 - CCNA_01966 0.17 -0.1
2,108,686 - CCNA_01966 0.17 -2.5
2,108,688 + CCNA_01966 0.17 -0.1
2,108,688 + CCNA_01966 0.17 -1.1
2,108,691 - CCNA_01966 0.17 -1.6
2,108,701 - CCNA_01966 0.18 -0.1
2,108,701 - CCNA_01966 0.18 -0.7
2,108,732 + CCNA_01966 0.19 +1.1
2,108,737 + CCNA_01966 0.19 +0.5
2,108,737 + CCNA_01966 0.19 -0.2
2,108,737 + CCNA_01966 0.19 -2.6
2,108,745 - CCNA_01966 0.19 -2.2
2,108,748 + CCNA_01966 0.19 +0.3
2,108,784 - CCNA_01966 0.21 +0.3
2,108,815 + CCNA_01966 0.22 -1.2
2,108,823 - CCNA_01966 0.22 -0.8
2,108,843 - CCNA_01966 0.23 -1.4
2,108,930 + CCNA_01966 0.26 +0.8
2,108,941 - CCNA_01966 0.26 -1.2

Or see this region's nucleotide sequence