Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01879 and CCNA_01880 are separated by 76 nucleotides CCNA_01880 and CCNA_01881 overlap by 4 nucleotides CCNA_01881 and CCNA_01882 overlap by 4 nucleotides CCNA_01882 and CCNA_01883 are separated by 13 nucleotides
CCNA_01879: CCNA_01879 - NADH:flavin oxidoreductases, old yellow enzyme family, at 2,018,600 to 2,019,703
_01879
CCNA_01880: CCNA_01880 - 3-ketoacyl-(acyl-carrier-protein) reductase FabG, at 2,019,780 to 2,020,523
_01880
CCNA_01881: CCNA_01881 - NAD-binding Rossmann superfamily protein, at 2,020,520 to 2,021,158
_01881
CCNA_01882: CCNA_01882 - SMP-30/gluconolaconase/LRE-like protein, at 2,021,155 to 2,022,036
_01882
CCNA_01883: CCNA_01883 - acyl-CoA dehydrogenase, at 2,022,050 to 2,023,222
_01883
Position (kb)
2020
2021
2022 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2019.527 kb on - strand, within CCNA_01879 at 2019.560 kb on - strand, within CCNA_01879 at 2019.561 kb on - strand, within CCNA_01879 at 2019.571 kb on - strand, within CCNA_01879 at 2019.635 kb on - strand at 2019.635 kb on - strand at 2019.637 kb on + strand at 2019.719 kb on - strand at 2019.788 kb on + strand at 2019.833 kb on + strand at 2019.882 kb on - strand, within CCNA_01880 at 2019.900 kb on + strand, within CCNA_01880 at 2019.932 kb on - strand, within CCNA_01880 at 2019.940 kb on + strand, within CCNA_01880 at 2019.995 kb on + strand, within CCNA_01880 at 2019.998 kb on - strand, within CCNA_01880 at 2020.002 kb on + strand, within CCNA_01880 at 2020.012 kb on + strand, within CCNA_01880 at 2020.020 kb on - strand, within CCNA_01880 at 2020.057 kb on - strand, within CCNA_01880 at 2020.067 kb on - strand, within CCNA_01880 at 2020.067 kb on - strand, within CCNA_01880 at 2020.079 kb on + strand, within CCNA_01880 at 2020.079 kb on + strand, within CCNA_01880 at 2020.092 kb on + strand, within CCNA_01880 at 2020.092 kb on + strand, within CCNA_01880 at 2020.100 kb on - strand, within CCNA_01880 at 2020.100 kb on - strand, within CCNA_01880 at 2020.100 kb on - strand, within CCNA_01880 at 2020.238 kb on + strand, within CCNA_01880 at 2020.246 kb on - strand, within CCNA_01880 at 2020.262 kb on + strand, within CCNA_01880 at 2020.386 kb on + strand, within CCNA_01880 at 2020.388 kb on + strand, within CCNA_01880 at 2020.400 kb on - strand, within CCNA_01880 at 2020.457 kb on - strand at 2020.478 kb on + strand at 2020.517 kb on + strand at 2020.525 kb on - strand at 2020.526 kb on - strand at 2020.536 kb on - strand at 2020.577 kb on + strand at 2020.577 kb on + strand at 2020.577 kb on + strand at 2020.585 kb on - strand, within CCNA_01881 at 2020.585 kb on - strand, within CCNA_01881 at 2020.603 kb on - strand, within CCNA_01881 at 2020.618 kb on - strand, within CCNA_01881 at 2020.645 kb on - strand, within CCNA_01881 at 2020.650 kb on - strand, within CCNA_01881 at 2020.766 kb on - strand, within CCNA_01881 at 2020.775 kb on + strand, within CCNA_01881 at 2020.775 kb on + strand, within CCNA_01881 at 2020.776 kb on - strand, within CCNA_01881 at 2020.776 kb on - strand, within CCNA_01881 at 2020.776 kb on - strand, within CCNA_01881 at 2020.795 kb on - strand, within CCNA_01881 at 2020.828 kb on - strand, within CCNA_01881 at 2020.895 kb on - strand, within CCNA_01881 at 2020.934 kb on + strand, within CCNA_01881 at 2020.955 kb on + strand, within CCNA_01881 at 2020.956 kb on + strand, within CCNA_01881 at 2020.956 kb on + strand, within CCNA_01881 at 2020.963 kb on - strand, within CCNA_01881 at 2020.963 kb on - strand, within CCNA_01881 at 2020.963 kb on - strand, within CCNA_01881 at 2020.964 kb on - strand, within CCNA_01881 at 2020.966 kb on + strand, within CCNA_01881 at 2020.967 kb on + strand, within CCNA_01881 at 2020.982 kb on + strand, within CCNA_01881 at 2020.982 kb on + strand, within CCNA_01881 at 2020.997 kb on - strand, within CCNA_01881 at 2021.001 kb on + strand, within CCNA_01881 at 2021.009 kb on - strand, within CCNA_01881 at 2021.019 kb on + strand, within CCNA_01881 at 2021.060 kb on + strand, within CCNA_01881 at 2021.099 kb on + strand at 2021.107 kb on - strand at 2021.137 kb on + strand at 2021.152 kb on - strand at 2021.189 kb on + strand at 2021.225 kb on + strand at 2021.235 kb on + strand at 2021.238 kb on + strand at 2021.238 kb on + strand at 2021.273 kb on + strand, within CCNA_01882 at 2021.320 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.335 kb on + strand, within CCNA_01882 at 2021.343 kb on - strand, within CCNA_01882 at 2021.435 kb on + strand, within CCNA_01882 at 2021.436 kb on - strand, within CCNA_01882 at 2021.436 kb on - strand, within CCNA_01882 at 2021.443 kb on - strand, within CCNA_01882 at 2021.443 kb on - strand, within CCNA_01882 at 2021.555 kb on - strand, within CCNA_01882 at 2021.597 kb on - strand, within CCNA_01882 at 2021.637 kb on + strand, within CCNA_01882 at 2021.651 kb on + strand, within CCNA_01882 at 2021.655 kb on + strand, within CCNA_01882 at 2021.686 kb on - strand, within CCNA_01882 at 2021.686 kb on - strand, within CCNA_01882 at 2021.699 kb on - strand, within CCNA_01882 at 2021.734 kb on + strand, within CCNA_01882 at 2021.734 kb on + strand, within CCNA_01882 at 2021.734 kb on + strand, within CCNA_01882 at 2021.742 kb on - strand, within CCNA_01882 at 2021.742 kb on - strand, within CCNA_01882 at 2021.786 kb on + strand, within CCNA_01882 at 2021.796 kb on + strand, within CCNA_01882 at 2021.812 kb on - strand, within CCNA_01882 at 2021.859 kb on - strand, within CCNA_01882 at 2021.873 kb on + strand, within CCNA_01882 at 2021.876 kb on - strand, within CCNA_01882 at 2021.884 kb on + strand, within CCNA_01882 at 2021.884 kb on + strand, within CCNA_01882 at 2021.934 kb on - strand, within CCNA_01882 at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.993 kb on + strand at 2021.995 kb on + strand at 2022.001 kb on - strand at 2022.001 kb on - strand at 2022.001 kb on - strand at 2022.021 kb on - strand at 2022.030 kb on + strand at 2022.030 kb on + strand at 2022.043 kb on - strand at 2022.054 kb on + strand at 2022.054 kb on + strand at 2022.066 kb on + strand at 2022.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,019,527 - CCNA_01879 0.84 +0.4 2,019,560 - CCNA_01879 0.87 -0.7 2,019,561 - CCNA_01879 0.87 +0.9 2,019,571 - CCNA_01879 0.88 -0.1 2,019,635 - -0.4 2,019,635 - +1.5 2,019,637 + +1.9 2,019,719 - -1.2 2,019,788 + -0.5 2,019,833 + +0.7 2,019,882 - CCNA_01880 0.14 -0.6 2,019,900 + CCNA_01880 0.16 -1.7 2,019,932 - CCNA_01880 0.20 -0.3 2,019,940 + CCNA_01880 0.22 +2.2 2,019,995 + CCNA_01880 0.29 -2.0 2,019,998 - CCNA_01880 0.29 -1.1 2,020,002 + CCNA_01880 0.30 +0.0 2,020,012 + CCNA_01880 0.31 +2.2 2,020,020 - CCNA_01880 0.32 -1.1 2,020,057 - CCNA_01880 0.37 -0.1 2,020,067 - CCNA_01880 0.39 -1.4 2,020,067 - CCNA_01880 0.39 -1.4 2,020,079 + CCNA_01880 0.40 +0.0 2,020,079 + CCNA_01880 0.40 +0.9 2,020,092 + CCNA_01880 0.42 -1.6 2,020,092 + CCNA_01880 0.42 -1.0 2,020,100 - CCNA_01880 0.43 -0.3 2,020,100 - CCNA_01880 0.43 -1.7 2,020,100 - CCNA_01880 0.43 -0.2 2,020,238 + CCNA_01880 0.62 +0.3 2,020,246 - CCNA_01880 0.63 +0.5 2,020,262 + CCNA_01880 0.65 +2.2 2,020,386 + CCNA_01880 0.81 -0.4 2,020,388 + CCNA_01880 0.82 -0.7 2,020,400 - CCNA_01880 0.83 -0.5 2,020,457 - +2.9 2,020,478 + +0.3 2,020,517 + -1.2 2,020,525 - -1.0 2,020,526 - +0.3 2,020,536 - -0.7 2,020,577 + +0.7 2,020,577 + -0.5 2,020,577 + +1.8 2,020,585 - CCNA_01881 0.10 +0.4 2,020,585 - CCNA_01881 0.10 -1.1 2,020,603 - CCNA_01881 0.13 -0.4 2,020,618 - CCNA_01881 0.15 +1.2 2,020,645 - CCNA_01881 0.20 -1.7 2,020,650 - CCNA_01881 0.20 +1.5 2,020,766 - CCNA_01881 0.38 -1.7 2,020,775 + CCNA_01881 0.40 +0.7 2,020,775 + CCNA_01881 0.40 -1.6 2,020,776 - CCNA_01881 0.40 -0.5 2,020,776 - CCNA_01881 0.40 -1.5 2,020,776 - CCNA_01881 0.40 -2.1 2,020,795 - CCNA_01881 0.43 +0.2 2,020,828 - CCNA_01881 0.48 -2.3 2,020,895 - CCNA_01881 0.59 -0.6 2,020,934 + CCNA_01881 0.65 +0.1 2,020,955 + CCNA_01881 0.68 -1.1 2,020,956 + CCNA_01881 0.68 -1.2 2,020,956 + CCNA_01881 0.68 -1.2 2,020,963 - CCNA_01881 0.69 -0.9 2,020,963 - CCNA_01881 0.69 +0.8 2,020,963 - CCNA_01881 0.69 -0.7 2,020,964 - CCNA_01881 0.69 -0.3 2,020,966 + CCNA_01881 0.70 +1.0 2,020,967 + CCNA_01881 0.70 -0.7 2,020,982 + CCNA_01881 0.72 -0.5 2,020,982 + CCNA_01881 0.72 -1.7 2,020,997 - CCNA_01881 0.75 -0.2 2,021,001 + CCNA_01881 0.75 -2.2 2,021,009 - CCNA_01881 0.77 -1.7 2,021,019 + CCNA_01881 0.78 +1.6 2,021,060 + CCNA_01881 0.85 -1.2 2,021,099 + -0.9 2,021,107 - -1.2 2,021,137 + +0.4 2,021,152 - -1.4 2,021,189 + +2.2 2,021,225 + -1.8 2,021,235 + -0.6 2,021,238 + +0.9 2,021,238 + -1.6 2,021,273 + CCNA_01882 0.13 -1.5 2,021,320 + CCNA_01882 0.19 -2.2 2,021,335 + CCNA_01882 0.20 +0.2 2,021,335 + CCNA_01882 0.20 -0.1 2,021,335 + CCNA_01882 0.20 -1.4 2,021,335 + CCNA_01882 0.20 +0.3 2,021,335 + CCNA_01882 0.20 -0.5 2,021,335 + CCNA_01882 0.20 +0.3 2,021,343 - CCNA_01882 0.21 -1.8 2,021,435 + CCNA_01882 0.32 +0.9 2,021,436 - CCNA_01882 0.32 -0.2 2,021,436 - CCNA_01882 0.32 +0.3 2,021,443 - CCNA_01882 0.33 +0.8 2,021,443 - CCNA_01882 0.33 -1.3 2,021,555 - CCNA_01882 0.45 -2.0 2,021,597 - CCNA_01882 0.50 -0.7 2,021,637 + CCNA_01882 0.55 +0.5 2,021,651 + CCNA_01882 0.56 -1.9 2,021,655 + CCNA_01882 0.57 +0.3 2,021,686 - CCNA_01882 0.60 +0.3 2,021,686 - CCNA_01882 0.60 -0.4 2,021,699 - CCNA_01882 0.62 -1.8 2,021,734 + CCNA_01882 0.66 -0.9 2,021,734 + CCNA_01882 0.66 -0.1 2,021,734 + CCNA_01882 0.66 -0.2 2,021,742 - CCNA_01882 0.67 +1.2 2,021,742 - CCNA_01882 0.67 -1.4 2,021,786 + CCNA_01882 0.72 -0.1 2,021,796 + CCNA_01882 0.73 -2.1 2,021,812 - CCNA_01882 0.74 +1.4 2,021,859 - CCNA_01882 0.80 -0.7 2,021,873 + CCNA_01882 0.81 -2.1 2,021,876 - CCNA_01882 0.82 +0.3 2,021,884 + CCNA_01882 0.83 -0.9 2,021,884 + CCNA_01882 0.83 +1.1 2,021,934 - CCNA_01882 0.88 -1.0 2,021,993 + -0.3 2,021,993 + +0.2 2,021,993 + +0.7 2,021,993 + -0.7 2,021,993 + +0.9 2,021,993 + -0.7 2,021,993 + +2.2 2,021,993 + -0.4 2,021,995 + +0.3 2,022,001 - +0.3 2,022,001 - +1.0 2,022,001 - -0.7 2,022,021 - -1.0 2,022,030 + +1.1 2,022,030 + -0.5 2,022,043 - -0.6 2,022,054 + -1.0 2,022,054 + -1.5 2,022,066 + -0.4 2,022,147 + -1.1
Or see this region's nucleotide sequence