Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01881

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01879 and CCNA_01880 are separated by 76 nucleotidesCCNA_01880 and CCNA_01881 overlap by 4 nucleotidesCCNA_01881 and CCNA_01882 overlap by 4 nucleotidesCCNA_01882 and CCNA_01883 are separated by 13 nucleotides CCNA_01879: CCNA_01879 - NADH:flavin oxidoreductases, old yellow enzyme family, at 2,018,600 to 2,019,703 _01879 CCNA_01880: CCNA_01880 - 3-ketoacyl-(acyl-carrier-protein) reductase FabG, at 2,019,780 to 2,020,523 _01880 CCNA_01881: CCNA_01881 - NAD-binding Rossmann superfamily protein, at 2,020,520 to 2,021,158 _01881 CCNA_01882: CCNA_01882 - SMP-30/gluconolaconase/LRE-like protein, at 2,021,155 to 2,022,036 _01882 CCNA_01883: CCNA_01883 - acyl-CoA dehydrogenase, at 2,022,050 to 2,023,222 _01883 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2019.527 kb on - strand, within CCNA_01879at 2019.560 kb on - strand, within CCNA_01879at 2019.561 kb on - strand, within CCNA_01879at 2019.571 kb on - strand, within CCNA_01879at 2019.635 kb on - strandat 2019.635 kb on - strandat 2019.637 kb on + strandat 2019.719 kb on - strandat 2019.788 kb on + strandat 2019.833 kb on + strandat 2019.882 kb on - strand, within CCNA_01880at 2019.900 kb on + strand, within CCNA_01880at 2019.932 kb on - strand, within CCNA_01880at 2019.940 kb on + strand, within CCNA_01880at 2019.995 kb on + strand, within CCNA_01880at 2019.998 kb on - strand, within CCNA_01880at 2020.002 kb on + strand, within CCNA_01880at 2020.012 kb on + strand, within CCNA_01880at 2020.020 kb on - strand, within CCNA_01880at 2020.057 kb on - strand, within CCNA_01880at 2020.067 kb on - strand, within CCNA_01880at 2020.067 kb on - strand, within CCNA_01880at 2020.079 kb on + strand, within CCNA_01880at 2020.079 kb on + strand, within CCNA_01880at 2020.092 kb on + strand, within CCNA_01880at 2020.092 kb on + strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.100 kb on - strand, within CCNA_01880at 2020.238 kb on + strand, within CCNA_01880at 2020.246 kb on - strand, within CCNA_01880at 2020.262 kb on + strand, within CCNA_01880at 2020.386 kb on + strand, within CCNA_01880at 2020.388 kb on + strand, within CCNA_01880at 2020.400 kb on - strand, within CCNA_01880at 2020.457 kb on - strandat 2020.478 kb on + strandat 2020.517 kb on + strandat 2020.525 kb on - strandat 2020.526 kb on - strandat 2020.536 kb on - strandat 2020.577 kb on + strandat 2020.577 kb on + strandat 2020.577 kb on + strandat 2020.585 kb on - strand, within CCNA_01881at 2020.585 kb on - strand, within CCNA_01881at 2020.603 kb on - strand, within CCNA_01881at 2020.618 kb on - strand, within CCNA_01881at 2020.645 kb on - strand, within CCNA_01881at 2020.650 kb on - strand, within CCNA_01881at 2020.766 kb on - strand, within CCNA_01881at 2020.775 kb on + strand, within CCNA_01881at 2020.775 kb on + strand, within CCNA_01881at 2020.776 kb on - strand, within CCNA_01881at 2020.776 kb on - strand, within CCNA_01881at 2020.776 kb on - strand, within CCNA_01881at 2020.795 kb on - strand, within CCNA_01881at 2020.828 kb on - strand, within CCNA_01881at 2020.895 kb on - strand, within CCNA_01881at 2020.934 kb on + strand, within CCNA_01881at 2020.955 kb on + strand, within CCNA_01881at 2020.956 kb on + strand, within CCNA_01881at 2020.956 kb on + strand, within CCNA_01881at 2020.963 kb on - strand, within CCNA_01881at 2020.963 kb on - strand, within CCNA_01881at 2020.963 kb on - strand, within CCNA_01881at 2020.964 kb on - strand, within CCNA_01881at 2020.966 kb on + strand, within CCNA_01881at 2020.967 kb on + strand, within CCNA_01881at 2020.982 kb on + strand, within CCNA_01881at 2020.982 kb on + strand, within CCNA_01881at 2020.997 kb on - strand, within CCNA_01881at 2021.001 kb on + strand, within CCNA_01881at 2021.009 kb on - strand, within CCNA_01881at 2021.019 kb on + strand, within CCNA_01881at 2021.060 kb on + strand, within CCNA_01881at 2021.099 kb on + strandat 2021.107 kb on - strandat 2021.137 kb on + strandat 2021.152 kb on - strandat 2021.189 kb on + strandat 2021.225 kb on + strandat 2021.235 kb on + strandat 2021.238 kb on + strandat 2021.238 kb on + strandat 2021.273 kb on + strand, within CCNA_01882at 2021.320 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.335 kb on + strand, within CCNA_01882at 2021.343 kb on - strand, within CCNA_01882at 2021.435 kb on + strand, within CCNA_01882at 2021.436 kb on - strand, within CCNA_01882at 2021.436 kb on - strand, within CCNA_01882at 2021.443 kb on - strand, within CCNA_01882at 2021.443 kb on - strand, within CCNA_01882at 2021.555 kb on - strand, within CCNA_01882at 2021.597 kb on - strand, within CCNA_01882at 2021.637 kb on + strand, within CCNA_01882at 2021.651 kb on + strand, within CCNA_01882at 2021.655 kb on + strand, within CCNA_01882at 2021.686 kb on - strand, within CCNA_01882at 2021.686 kb on - strand, within CCNA_01882at 2021.699 kb on - strand, within CCNA_01882at 2021.734 kb on + strand, within CCNA_01882at 2021.734 kb on + strand, within CCNA_01882at 2021.734 kb on + strand, within CCNA_01882at 2021.742 kb on - strand, within CCNA_01882at 2021.742 kb on - strand, within CCNA_01882at 2021.786 kb on + strand, within CCNA_01882at 2021.796 kb on + strand, within CCNA_01882at 2021.812 kb on - strand, within CCNA_01882at 2021.859 kb on - strand, within CCNA_01882at 2021.873 kb on + strand, within CCNA_01882at 2021.876 kb on - strand, within CCNA_01882at 2021.884 kb on + strand, within CCNA_01882at 2021.884 kb on + strand, within CCNA_01882at 2021.934 kb on - strand, within CCNA_01882at 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.993 kb on + strandat 2021.995 kb on + strandat 2022.001 kb on - strandat 2022.001 kb on - strandat 2022.001 kb on - strandat 2022.021 kb on - strandat 2022.030 kb on + strandat 2022.030 kb on + strandat 2022.043 kb on - strandat 2022.054 kb on + strandat 2022.054 kb on + strandat 2022.066 kb on + strandat 2022.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,019,527 - CCNA_01879 0.84 +0.4
2,019,560 - CCNA_01879 0.87 -0.7
2,019,561 - CCNA_01879 0.87 +0.9
2,019,571 - CCNA_01879 0.88 -0.1
2,019,635 - -0.4
2,019,635 - +1.5
2,019,637 + +1.9
2,019,719 - -1.2
2,019,788 + -0.5
2,019,833 + +0.7
2,019,882 - CCNA_01880 0.14 -0.6
2,019,900 + CCNA_01880 0.16 -1.7
2,019,932 - CCNA_01880 0.20 -0.3
2,019,940 + CCNA_01880 0.22 +2.2
2,019,995 + CCNA_01880 0.29 -2.0
2,019,998 - CCNA_01880 0.29 -1.1
2,020,002 + CCNA_01880 0.30 +0.0
2,020,012 + CCNA_01880 0.31 +2.2
2,020,020 - CCNA_01880 0.32 -1.1
2,020,057 - CCNA_01880 0.37 -0.1
2,020,067 - CCNA_01880 0.39 -1.4
2,020,067 - CCNA_01880 0.39 -1.4
2,020,079 + CCNA_01880 0.40 +0.0
2,020,079 + CCNA_01880 0.40 +0.9
2,020,092 + CCNA_01880 0.42 -1.6
2,020,092 + CCNA_01880 0.42 -1.0
2,020,100 - CCNA_01880 0.43 -0.3
2,020,100 - CCNA_01880 0.43 -1.7
2,020,100 - CCNA_01880 0.43 -0.2
2,020,238 + CCNA_01880 0.62 +0.3
2,020,246 - CCNA_01880 0.63 +0.5
2,020,262 + CCNA_01880 0.65 +2.2
2,020,386 + CCNA_01880 0.81 -0.4
2,020,388 + CCNA_01880 0.82 -0.7
2,020,400 - CCNA_01880 0.83 -0.5
2,020,457 - +2.9
2,020,478 + +0.3
2,020,517 + -1.2
2,020,525 - -1.0
2,020,526 - +0.3
2,020,536 - -0.7
2,020,577 + +0.7
2,020,577 + -0.5
2,020,577 + +1.8
2,020,585 - CCNA_01881 0.10 +0.4
2,020,585 - CCNA_01881 0.10 -1.1
2,020,603 - CCNA_01881 0.13 -0.4
2,020,618 - CCNA_01881 0.15 +1.2
2,020,645 - CCNA_01881 0.20 -1.7
2,020,650 - CCNA_01881 0.20 +1.5
2,020,766 - CCNA_01881 0.38 -1.7
2,020,775 + CCNA_01881 0.40 +0.7
2,020,775 + CCNA_01881 0.40 -1.6
2,020,776 - CCNA_01881 0.40 -0.5
2,020,776 - CCNA_01881 0.40 -1.5
2,020,776 - CCNA_01881 0.40 -2.1
2,020,795 - CCNA_01881 0.43 +0.2
2,020,828 - CCNA_01881 0.48 -2.3
2,020,895 - CCNA_01881 0.59 -0.6
2,020,934 + CCNA_01881 0.65 +0.1
2,020,955 + CCNA_01881 0.68 -1.1
2,020,956 + CCNA_01881 0.68 -1.2
2,020,956 + CCNA_01881 0.68 -1.2
2,020,963 - CCNA_01881 0.69 -0.9
2,020,963 - CCNA_01881 0.69 +0.8
2,020,963 - CCNA_01881 0.69 -0.7
2,020,964 - CCNA_01881 0.69 -0.3
2,020,966 + CCNA_01881 0.70 +1.0
2,020,967 + CCNA_01881 0.70 -0.7
2,020,982 + CCNA_01881 0.72 -0.5
2,020,982 + CCNA_01881 0.72 -1.7
2,020,997 - CCNA_01881 0.75 -0.2
2,021,001 + CCNA_01881 0.75 -2.2
2,021,009 - CCNA_01881 0.77 -1.7
2,021,019 + CCNA_01881 0.78 +1.6
2,021,060 + CCNA_01881 0.85 -1.2
2,021,099 + -0.9
2,021,107 - -1.2
2,021,137 + +0.4
2,021,152 - -1.4
2,021,189 + +2.2
2,021,225 + -1.8
2,021,235 + -0.6
2,021,238 + +0.9
2,021,238 + -1.6
2,021,273 + CCNA_01882 0.13 -1.5
2,021,320 + CCNA_01882 0.19 -2.2
2,021,335 + CCNA_01882 0.20 +0.2
2,021,335 + CCNA_01882 0.20 -0.1
2,021,335 + CCNA_01882 0.20 -1.4
2,021,335 + CCNA_01882 0.20 +0.3
2,021,335 + CCNA_01882 0.20 -0.5
2,021,335 + CCNA_01882 0.20 +0.3
2,021,343 - CCNA_01882 0.21 -1.8
2,021,435 + CCNA_01882 0.32 +0.9
2,021,436 - CCNA_01882 0.32 -0.2
2,021,436 - CCNA_01882 0.32 +0.3
2,021,443 - CCNA_01882 0.33 +0.8
2,021,443 - CCNA_01882 0.33 -1.3
2,021,555 - CCNA_01882 0.45 -2.0
2,021,597 - CCNA_01882 0.50 -0.7
2,021,637 + CCNA_01882 0.55 +0.5
2,021,651 + CCNA_01882 0.56 -1.9
2,021,655 + CCNA_01882 0.57 +0.3
2,021,686 - CCNA_01882 0.60 +0.3
2,021,686 - CCNA_01882 0.60 -0.4
2,021,699 - CCNA_01882 0.62 -1.8
2,021,734 + CCNA_01882 0.66 -0.9
2,021,734 + CCNA_01882 0.66 -0.1
2,021,734 + CCNA_01882 0.66 -0.2
2,021,742 - CCNA_01882 0.67 +1.2
2,021,742 - CCNA_01882 0.67 -1.4
2,021,786 + CCNA_01882 0.72 -0.1
2,021,796 + CCNA_01882 0.73 -2.1
2,021,812 - CCNA_01882 0.74 +1.4
2,021,859 - CCNA_01882 0.80 -0.7
2,021,873 + CCNA_01882 0.81 -2.1
2,021,876 - CCNA_01882 0.82 +0.3
2,021,884 + CCNA_01882 0.83 -0.9
2,021,884 + CCNA_01882 0.83 +1.1
2,021,934 - CCNA_01882 0.88 -1.0
2,021,993 + -0.3
2,021,993 + +0.2
2,021,993 + +0.7
2,021,993 + -0.7
2,021,993 + +0.9
2,021,993 + -0.7
2,021,993 + +2.2
2,021,993 + -0.4
2,021,995 + +0.3
2,022,001 - +0.3
2,022,001 - +1.0
2,022,001 - -0.7
2,022,021 - -1.0
2,022,030 + +1.1
2,022,030 + -0.5
2,022,043 - -0.6
2,022,054 + -1.0
2,022,054 + -1.5
2,022,066 + -0.4
2,022,147 + -1.1

Or see this region's nucleotide sequence