Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01870 and CCNA_03895 are separated by 19 nucleotides CCNA_03895 and CCNA_01873 are separated by 8 nucleotides CCNA_01873 and CCNA_01874 are separated by 293 nucleotides
CCNA_01870: CCNA_01870 - NagC-family transcriptional regulator, at 2,008,780 to 2,009,934
_01870
CCNA_03895: CCNA_03895 - hypothetical protein, at 2,009,954 to 2,010,232
_03895
CCNA_01873: CCNA_01873 - magnesium and cobalt transport protein corA, at 2,010,241 to 2,010,474
_01873
CCNA_01874: CCNA_01874 - transposase, at 2,010,768 to 2,012,213
_01874
Position (kb)
2010
2011 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2009.247 kb on - strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.255 kb on + strand, within CCNA_01870 at 2009.263 kb on - strand, within CCNA_01870 at 2009.263 kb on - strand, within CCNA_01870 at 2009.270 kb on + strand, within CCNA_01870 at 2009.289 kb on - strand, within CCNA_01870 at 2009.290 kb on - strand, within CCNA_01870 at 2009.299 kb on - strand, within CCNA_01870 at 2009.302 kb on - strand, within CCNA_01870 at 2009.304 kb on - strand, within CCNA_01870 at 2009.350 kb on - strand, within CCNA_01870 at 2009.352 kb on + strand, within CCNA_01870 at 2009.353 kb on + strand, within CCNA_01870 at 2009.361 kb on - strand, within CCNA_01870 at 2009.361 kb on - strand, within CCNA_01870 at 2009.371 kb on - strand, within CCNA_01870 at 2009.371 kb on - strand, within CCNA_01870 at 2009.408 kb on - strand, within CCNA_01870 at 2009.417 kb on + strand, within CCNA_01870 at 2009.417 kb on + strand, within CCNA_01870 at 2009.417 kb on + strand, within CCNA_01870 at 2009.431 kb on + strand, within CCNA_01870 at 2009.431 kb on + strand at 2009.431 kb on + strand, within CCNA_01870 at 2009.439 kb on - strand, within CCNA_01870 at 2009.446 kb on - strand, within CCNA_01870 at 2009.473 kb on + strand, within CCNA_01870 at 2009.544 kb on - strand, within CCNA_01870 at 2009.561 kb on + strand, within CCNA_01870 at 2009.569 kb on - strand, within CCNA_01870 at 2009.708 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.817 kb on + strand, within CCNA_01870 at 2009.825 kb on - strand at 2009.825 kb on - strand at 2009.825 kb on - strand at 2009.825 kb on - strand at 2009.836 kb on + strand at 2009.865 kb on + strand at 2009.873 kb on - strand at 2009.880 kb on + strand at 2009.886 kb on - strand at 2009.888 kb on - strand at 2009.904 kb on + strand at 2009.912 kb on - strand at 2009.935 kb on + strand at 2009.942 kb on + strand at 2009.943 kb on - strand at 2009.951 kb on - strand at 2009.983 kb on - strand, within CCNA_03895 at 2009.996 kb on - strand, within CCNA_03895 at 2010.002 kb on + strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.010 kb on - strand, within CCNA_03895 at 2010.081 kb on + strand, within CCNA_03895 at 2010.106 kb on + strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.114 kb on - strand, within CCNA_03895 at 2010.176 kb on + strand, within CCNA_03895 at 2010.248 kb on + strand at 2010.256 kb on - strand at 2010.256 kb on - strand at 2010.276 kb on - strand, within CCNA_01873 at 2010.308 kb on + strand, within CCNA_01873 at 2010.331 kb on - strand, within CCNA_01873 at 2010.361 kb on - strand, within CCNA_01873 at 2010.437 kb on + strand, within CCNA_01873 at 2010.468 kb on - strand at 2010.468 kb on - strand at 2010.475 kb on - strand at 2010.490 kb on - strand at 2010.521 kb on - strand at 2010.571 kb on + strand at 2010.613 kb on - strand at 2010.621 kb on - strand at 2010.633 kb on - strand at 2010.703 kb on - strand at 2010.703 kb on - strand at 2010.713 kb on - strand at 2010.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,009,247 - CCNA_01870 0.40 -0.7 2,009,255 + CCNA_01870 0.41 +0.5 2,009,255 + CCNA_01870 0.41 +0.1 2,009,255 + CCNA_01870 0.41 +0.2 2,009,255 + CCNA_01870 0.41 +0.5 2,009,255 + CCNA_01870 0.41 -0.6 2,009,255 + CCNA_01870 0.41 -2.2 2,009,263 - CCNA_01870 0.42 -1.2 2,009,263 - CCNA_01870 0.42 -0.9 2,009,270 + CCNA_01870 0.42 -0.6 2,009,289 - CCNA_01870 0.44 -2.0 2,009,290 - CCNA_01870 0.44 -1.9 2,009,299 - CCNA_01870 0.45 -0.5 2,009,302 - CCNA_01870 0.45 -0.0 2,009,304 - CCNA_01870 0.45 +2.4 2,009,350 - CCNA_01870 0.49 -1.0 2,009,352 + CCNA_01870 0.50 -0.2 2,009,353 + CCNA_01870 0.50 +1.0 2,009,361 - CCNA_01870 0.50 +0.1 2,009,361 - CCNA_01870 0.50 +0.6 2,009,371 - CCNA_01870 0.51 -0.6 2,009,371 - CCNA_01870 0.51 +0.5 2,009,408 - CCNA_01870 0.54 +0.0 2,009,417 + CCNA_01870 0.55 -1.7 2,009,417 + CCNA_01870 0.55 +0.5 2,009,417 + CCNA_01870 0.55 -0.2 2,009,431 + CCNA_01870 0.56 -0.5 2,009,431 + +0.7 2,009,431 + CCNA_01870 0.56 -0.7 2,009,439 - CCNA_01870 0.57 +1.1 2,009,446 - CCNA_01870 0.58 -1.0 2,009,473 + CCNA_01870 0.60 +1.2 2,009,544 - CCNA_01870 0.66 -1.0 2,009,561 + CCNA_01870 0.68 -1.5 2,009,569 - CCNA_01870 0.68 -1.5 2,009,708 + CCNA_01870 0.80 +0.5 2,009,817 + CCNA_01870 0.90 -1.5 2,009,817 + CCNA_01870 0.90 -0.0 2,009,817 + CCNA_01870 0.90 -1.0 2,009,825 - -1.6 2,009,825 - -0.2 2,009,825 - +1.3 2,009,825 - +0.2 2,009,836 + -1.6 2,009,865 + +1.2 2,009,873 - -0.7 2,009,880 + -0.5 2,009,886 - -0.4 2,009,888 - -0.5 2,009,904 + +0.1 2,009,912 - +0.7 2,009,935 + +0.6 2,009,942 + +0.6 2,009,943 - +1.4 2,009,951 - -1.9 2,009,983 - CCNA_03895 0.10 +2.0 2,009,996 - CCNA_03895 0.15 -0.2 2,010,002 + CCNA_03895 0.17 -1.4 2,010,010 - CCNA_03895 0.20 -0.1 2,010,010 - CCNA_03895 0.20 -1.0 2,010,081 + CCNA_03895 0.46 -0.2 2,010,106 + CCNA_03895 0.54 -0.0 2,010,114 - CCNA_03895 0.57 -0.5 2,010,114 - CCNA_03895 0.57 -1.0 2,010,114 - CCNA_03895 0.57 -1.0 2,010,176 + CCNA_03895 0.80 +0.5 2,010,248 + +1.4 2,010,256 - +0.2 2,010,256 - -0.7 2,010,276 - CCNA_01873 0.15 -1.3 2,010,308 + CCNA_01873 0.29 +1.2 2,010,331 - CCNA_01873 0.38 +0.4 2,010,361 - CCNA_01873 0.51 -0.8 2,010,437 + CCNA_01873 0.84 -0.5 2,010,468 - -1.6 2,010,468 - -0.8 2,010,475 - -2.3 2,010,490 - -0.3 2,010,521 - +0.6 2,010,571 + -0.5 2,010,613 - -0.4 2,010,621 - +0.2 2,010,633 - -2.1 2,010,703 - -3.8 2,010,703 - -1.1 2,010,713 - -1.3 2,010,732 - -0.1
Or see this region's nucleotide sequence