Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01657

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01656 and CCNA_01657 are separated by 41 nucleotidesCCNA_01657 and CCNA_01658 are separated by 86 nucleotides CCNA_01656: CCNA_01656 - endonuclease/exonuclease/phosphatase family protein, at 1,777,143 to 1,778,120 _01656 CCNA_01657: CCNA_01657 - hypothetical protein, at 1,778,162 to 1,778,806 _01657 CCNA_01658: CCNA_01658 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,778,893 to 1,779,993 _01658 Position (kb) 1778 1779Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1777.200 kb on + strandat 1777.242 kb on - strand, within CCNA_01656at 1777.265 kb on - strand, within CCNA_01656at 1777.334 kb on + strand, within CCNA_01656at 1777.442 kb on + strand, within CCNA_01656at 1777.442 kb on + strand, within CCNA_01656at 1777.451 kb on - strand, within CCNA_01656at 1777.480 kb on + strand, within CCNA_01656at 1777.488 kb on + strand, within CCNA_01656at 1777.494 kb on - strand, within CCNA_01656at 1777.494 kb on - strand, within CCNA_01656at 1777.495 kb on + strand, within CCNA_01656at 1777.561 kb on - strand, within CCNA_01656at 1777.561 kb on - strand, within CCNA_01656at 1777.562 kb on + strand, within CCNA_01656at 1777.616 kb on - strand, within CCNA_01656at 1777.616 kb on - strand, within CCNA_01656at 1777.710 kb on - strand, within CCNA_01656at 1777.736 kb on + strand, within CCNA_01656at 1777.760 kb on - strand, within CCNA_01656at 1777.780 kb on + strand, within CCNA_01656at 1777.780 kb on + strand, within CCNA_01656at 1777.788 kb on + strand, within CCNA_01656at 1777.795 kb on + strand, within CCNA_01656at 1777.842 kb on + strand, within CCNA_01656at 1777.870 kb on - strand, within CCNA_01656at 1777.885 kb on - strand, within CCNA_01656at 1777.941 kb on + strand, within CCNA_01656at 1777.949 kb on + strand, within CCNA_01656at 1777.950 kb on - strand, within CCNA_01656at 1777.974 kb on + strand, within CCNA_01656at 1778.034 kb on + strandat 1778.042 kb on - strandat 1778.123 kb on - strandat 1778.134 kb on - strandat 1778.134 kb on - strandat 1778.146 kb on - strandat 1778.185 kb on + strandat 1778.188 kb on - strandat 1778.236 kb on - strand, within CCNA_01657at 1778.236 kb on - strand, within CCNA_01657at 1778.236 kb on - strand, within CCNA_01657at 1778.241 kb on - strand, within CCNA_01657at 1778.323 kb on + strand, within CCNA_01657at 1778.367 kb on + strand, within CCNA_01657at 1778.386 kb on + strand, within CCNA_01657at 1778.386 kb on + strand, within CCNA_01657at 1778.444 kb on - strand, within CCNA_01657at 1778.498 kb on + strand, within CCNA_01657at 1778.506 kb on - strand, within CCNA_01657at 1778.511 kb on + strand, within CCNA_01657at 1778.713 kb on - strand, within CCNA_01657at 1778.790 kb on - strandat 1778.803 kb on + strandat 1778.822 kb on + strandat 1778.824 kb on + strandat 1778.853 kb on + strandat 1778.853 kb on + strandat 1778.853 kb on + strandat 1778.861 kb on - strandat 1778.862 kb on - strandat 1778.877 kb on - strandat 1778.921 kb on + strandat 1778.992 kb on + strandat 1778.992 kb on + strandat 1778.995 kb on - strandat 1778.997 kb on + strandat 1779.005 kb on - strand, within CCNA_01658at 1779.157 kb on + strand, within CCNA_01658at 1779.258 kb on - strand, within CCNA_01658at 1779.380 kb on - strand, within CCNA_01658at 1779.414 kb on + strand, within CCNA_01658at 1779.451 kb on + strand, within CCNA_01658at 1779.459 kb on - strand, within CCNA_01658at 1779.514 kb on + strand, within CCNA_01658at 1779.531 kb on + strand, within CCNA_01658at 1779.566 kb on + strand, within CCNA_01658at 1779.664 kb on + strand, within CCNA_01658at 1779.672 kb on - strand, within CCNA_01658at 1779.727 kb on + strand, within CCNA_01658at 1779.737 kb on - strand, within CCNA_01658

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,777,200 + +0.8
1,777,242 - CCNA_01656 0.10 -0.1
1,777,265 - CCNA_01656 0.12 +1.6
1,777,334 + CCNA_01656 0.20 -0.6
1,777,442 + CCNA_01656 0.31 +1.3
1,777,442 + CCNA_01656 0.31 +1.1
1,777,451 - CCNA_01656 0.31 +0.2
1,777,480 + CCNA_01656 0.34 +0.3
1,777,488 + CCNA_01656 0.35 -1.4
1,777,494 - CCNA_01656 0.36 -0.2
1,777,494 - CCNA_01656 0.36 -0.5
1,777,495 + CCNA_01656 0.36 +0.0
1,777,561 - CCNA_01656 0.43 -0.7
1,777,561 - CCNA_01656 0.43 +1.5
1,777,562 + CCNA_01656 0.43 -1.7
1,777,616 - CCNA_01656 0.48 -2.0
1,777,616 - CCNA_01656 0.48 -0.2
1,777,710 - CCNA_01656 0.58 +0.4
1,777,736 + CCNA_01656 0.61 +0.9
1,777,760 - CCNA_01656 0.63 -0.2
1,777,780 + CCNA_01656 0.65 -0.1
1,777,780 + CCNA_01656 0.65 +0.7
1,777,788 + CCNA_01656 0.66 -0.9
1,777,795 + CCNA_01656 0.67 -2.4
1,777,842 + CCNA_01656 0.71 -1.9
1,777,870 - CCNA_01656 0.74 -1.4
1,777,885 - CCNA_01656 0.76 -1.3
1,777,941 + CCNA_01656 0.82 +1.1
1,777,949 + CCNA_01656 0.82 -2.3
1,777,950 - CCNA_01656 0.83 +0.7
1,777,974 + CCNA_01656 0.85 +0.8
1,778,034 + -0.3
1,778,042 - +0.0
1,778,123 - +0.6
1,778,134 - +0.7
1,778,134 - +1.3
1,778,146 - -2.4
1,778,185 + -0.3
1,778,188 - +0.5
1,778,236 - CCNA_01657 0.11 -0.1
1,778,236 - CCNA_01657 0.11 -0.6
1,778,236 - CCNA_01657 0.11 -0.1
1,778,241 - CCNA_01657 0.12 -1.2
1,778,323 + CCNA_01657 0.25 -1.0
1,778,367 + CCNA_01657 0.32 -0.0
1,778,386 + CCNA_01657 0.35 -1.6
1,778,386 + CCNA_01657 0.35 +0.9
1,778,444 - CCNA_01657 0.44 -1.3
1,778,498 + CCNA_01657 0.52 -0.6
1,778,506 - CCNA_01657 0.53 -0.0
1,778,511 + CCNA_01657 0.54 -0.6
1,778,713 - CCNA_01657 0.85 -0.4
1,778,790 - -1.4
1,778,803 + +2.9
1,778,822 + +0.3
1,778,824 + +1.1
1,778,853 + +0.3
1,778,853 + -0.7
1,778,853 + -0.5
1,778,861 - +0.2
1,778,862 - -1.6
1,778,877 - -0.4
1,778,921 + -0.5
1,778,992 + +0.8
1,778,992 + +1.1
1,778,995 - -0.4
1,778,997 + +1.7
1,779,005 - CCNA_01658 0.10 -0.0
1,779,157 + CCNA_01658 0.24 -1.1
1,779,258 - CCNA_01658 0.33 -1.1
1,779,380 - CCNA_01658 0.44 +0.3
1,779,414 + CCNA_01658 0.47 -0.5
1,779,451 + CCNA_01658 0.51 +2.3
1,779,459 - CCNA_01658 0.51 -0.1
1,779,514 + CCNA_01658 0.56 -0.9
1,779,531 + CCNA_01658 0.58 +2.9
1,779,566 + CCNA_01658 0.61 +0.5
1,779,664 + CCNA_01658 0.70 -0.9
1,779,672 - CCNA_01658 0.71 +1.9
1,779,727 + CCNA_01658 0.76 -0.6
1,779,737 - CCNA_01658 0.77 -0.7

Or see this region's nucleotide sequence