Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01656 and CCNA_01657 are separated by 41 nucleotides CCNA_01657 and CCNA_01658 are separated by 86 nucleotides
CCNA_01656: CCNA_01656 - endonuclease/exonuclease/phosphatase family protein, at 1,777,143 to 1,778,120
_01656
CCNA_01657: CCNA_01657 - hypothetical protein, at 1,778,162 to 1,778,806
_01657
CCNA_01658: CCNA_01658 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,778,893 to 1,779,993
_01658
Position (kb)
1778
1779 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1777.200 kb on + strand at 1777.242 kb on - strand, within CCNA_01656 at 1777.265 kb on - strand, within CCNA_01656 at 1777.334 kb on + strand, within CCNA_01656 at 1777.442 kb on + strand, within CCNA_01656 at 1777.442 kb on + strand, within CCNA_01656 at 1777.451 kb on - strand, within CCNA_01656 at 1777.480 kb on + strand, within CCNA_01656 at 1777.488 kb on + strand, within CCNA_01656 at 1777.494 kb on - strand, within CCNA_01656 at 1777.494 kb on - strand, within CCNA_01656 at 1777.495 kb on + strand, within CCNA_01656 at 1777.561 kb on - strand, within CCNA_01656 at 1777.561 kb on - strand, within CCNA_01656 at 1777.562 kb on + strand, within CCNA_01656 at 1777.616 kb on - strand, within CCNA_01656 at 1777.616 kb on - strand, within CCNA_01656 at 1777.710 kb on - strand, within CCNA_01656 at 1777.736 kb on + strand, within CCNA_01656 at 1777.760 kb on - strand, within CCNA_01656 at 1777.780 kb on + strand, within CCNA_01656 at 1777.780 kb on + strand, within CCNA_01656 at 1777.788 kb on + strand, within CCNA_01656 at 1777.795 kb on + strand, within CCNA_01656 at 1777.842 kb on + strand, within CCNA_01656 at 1777.870 kb on - strand, within CCNA_01656 at 1777.885 kb on - strand, within CCNA_01656 at 1777.941 kb on + strand, within CCNA_01656 at 1777.949 kb on + strand, within CCNA_01656 at 1777.950 kb on - strand, within CCNA_01656 at 1777.974 kb on + strand, within CCNA_01656 at 1778.034 kb on + strand at 1778.042 kb on - strand at 1778.123 kb on - strand at 1778.134 kb on - strand at 1778.134 kb on - strand at 1778.146 kb on - strand at 1778.185 kb on + strand at 1778.188 kb on - strand at 1778.236 kb on - strand, within CCNA_01657 at 1778.236 kb on - strand, within CCNA_01657 at 1778.236 kb on - strand, within CCNA_01657 at 1778.241 kb on - strand, within CCNA_01657 at 1778.323 kb on + strand, within CCNA_01657 at 1778.367 kb on + strand, within CCNA_01657 at 1778.386 kb on + strand, within CCNA_01657 at 1778.386 kb on + strand, within CCNA_01657 at 1778.444 kb on - strand, within CCNA_01657 at 1778.498 kb on + strand, within CCNA_01657 at 1778.506 kb on - strand, within CCNA_01657 at 1778.511 kb on + strand, within CCNA_01657 at 1778.713 kb on - strand, within CCNA_01657 at 1778.790 kb on - strand at 1778.803 kb on + strand at 1778.822 kb on + strand at 1778.824 kb on + strand at 1778.853 kb on + strand at 1778.853 kb on + strand at 1778.853 kb on + strand at 1778.861 kb on - strand at 1778.862 kb on - strand at 1778.877 kb on - strand at 1778.921 kb on + strand at 1778.992 kb on + strand at 1778.992 kb on + strand at 1778.995 kb on - strand at 1778.997 kb on + strand at 1779.005 kb on - strand, within CCNA_01658 at 1779.157 kb on + strand, within CCNA_01658 at 1779.258 kb on - strand, within CCNA_01658 at 1779.380 kb on - strand, within CCNA_01658 at 1779.414 kb on + strand, within CCNA_01658 at 1779.451 kb on + strand, within CCNA_01658 at 1779.459 kb on - strand, within CCNA_01658 at 1779.514 kb on + strand, within CCNA_01658 at 1779.531 kb on + strand, within CCNA_01658 at 1779.566 kb on + strand, within CCNA_01658 at 1779.664 kb on + strand, within CCNA_01658 at 1779.672 kb on - strand, within CCNA_01658 at 1779.727 kb on + strand, within CCNA_01658 at 1779.737 kb on - strand, within CCNA_01658
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,777,200 + +0.8 1,777,242 - CCNA_01656 0.10 -0.1 1,777,265 - CCNA_01656 0.12 +1.6 1,777,334 + CCNA_01656 0.20 -0.6 1,777,442 + CCNA_01656 0.31 +1.3 1,777,442 + CCNA_01656 0.31 +1.1 1,777,451 - CCNA_01656 0.31 +0.2 1,777,480 + CCNA_01656 0.34 +0.3 1,777,488 + CCNA_01656 0.35 -1.4 1,777,494 - CCNA_01656 0.36 -0.2 1,777,494 - CCNA_01656 0.36 -0.5 1,777,495 + CCNA_01656 0.36 +0.0 1,777,561 - CCNA_01656 0.43 -0.7 1,777,561 - CCNA_01656 0.43 +1.5 1,777,562 + CCNA_01656 0.43 -1.7 1,777,616 - CCNA_01656 0.48 -2.0 1,777,616 - CCNA_01656 0.48 -0.2 1,777,710 - CCNA_01656 0.58 +0.4 1,777,736 + CCNA_01656 0.61 +0.9 1,777,760 - CCNA_01656 0.63 -0.2 1,777,780 + CCNA_01656 0.65 -0.1 1,777,780 + CCNA_01656 0.65 +0.7 1,777,788 + CCNA_01656 0.66 -0.9 1,777,795 + CCNA_01656 0.67 -2.4 1,777,842 + CCNA_01656 0.71 -1.9 1,777,870 - CCNA_01656 0.74 -1.4 1,777,885 - CCNA_01656 0.76 -1.3 1,777,941 + CCNA_01656 0.82 +1.1 1,777,949 + CCNA_01656 0.82 -2.3 1,777,950 - CCNA_01656 0.83 +0.7 1,777,974 + CCNA_01656 0.85 +0.8 1,778,034 + -0.3 1,778,042 - +0.0 1,778,123 - +0.6 1,778,134 - +0.7 1,778,134 - +1.3 1,778,146 - -2.4 1,778,185 + -0.3 1,778,188 - +0.5 1,778,236 - CCNA_01657 0.11 -0.1 1,778,236 - CCNA_01657 0.11 -0.6 1,778,236 - CCNA_01657 0.11 -0.1 1,778,241 - CCNA_01657 0.12 -1.2 1,778,323 + CCNA_01657 0.25 -1.0 1,778,367 + CCNA_01657 0.32 -0.0 1,778,386 + CCNA_01657 0.35 -1.6 1,778,386 + CCNA_01657 0.35 +0.9 1,778,444 - CCNA_01657 0.44 -1.3 1,778,498 + CCNA_01657 0.52 -0.6 1,778,506 - CCNA_01657 0.53 -0.0 1,778,511 + CCNA_01657 0.54 -0.6 1,778,713 - CCNA_01657 0.85 -0.4 1,778,790 - -1.4 1,778,803 + +2.9 1,778,822 + +0.3 1,778,824 + +1.1 1,778,853 + +0.3 1,778,853 + -0.7 1,778,853 + -0.5 1,778,861 - +0.2 1,778,862 - -1.6 1,778,877 - -0.4 1,778,921 + -0.5 1,778,992 + +0.8 1,778,992 + +1.1 1,778,995 - -0.4 1,778,997 + +1.7 1,779,005 - CCNA_01658 0.10 -0.0 1,779,157 + CCNA_01658 0.24 -1.1 1,779,258 - CCNA_01658 0.33 -1.1 1,779,380 - CCNA_01658 0.44 +0.3 1,779,414 + CCNA_01658 0.47 -0.5 1,779,451 + CCNA_01658 0.51 +2.3 1,779,459 - CCNA_01658 0.51 -0.1 1,779,514 + CCNA_01658 0.56 -0.9 1,779,531 + CCNA_01658 0.58 +2.9 1,779,566 + CCNA_01658 0.61 +0.5 1,779,664 + CCNA_01658 0.70 -0.9 1,779,672 - CCNA_01658 0.71 +1.9 1,779,727 + CCNA_01658 0.76 -0.6 1,779,737 - CCNA_01658 0.77 -0.7
Or see this region's nucleotide sequence