Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01457 and CCNA_01458 are separated by 2 nucleotides CCNA_01458 and CCNA_01459 are separated by 0 nucleotides CCNA_01459 and CCNA_01460 are separated by 72 nucleotides CCNA_01460 and CCNA_01461 are separated by 27 nucleotides CCNA_01461 and CCNA_01462 are separated by 224 nucleotides
CCNA_01457: CCNA_01457 - hypothetical protein, at 1,567,625 to 1,567,876
_01457
CCNA_01458: CCNA_01458 - hypothetical protein, at 1,567,879 to 1,568,187
_01458
CCNA_01459: CCNA_01459 - hypothetical protein, at 1,568,188 to 1,568,445
_01459
CCNA_01460: CCNA_01460 - hypothetical protein, at 1,568,518 to 1,568,736
_01460
CCNA_01461: CCNA_01461 - hypothetical protein, at 1,568,764 to 1,569,069
_01461
CCNA_01462: CCNA_01462 - lactate 2-monooxygenase, at 1,569,294 to 1,570,469
_01462
Position (kb)
1568
1569 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1567.240 kb on + strand at 1567.240 kb on + strand at 1567.248 kb on - strand at 1567.289 kb on + strand at 1567.303 kb on - strand at 1567.318 kb on - strand at 1567.325 kb on - strand at 1567.325 kb on - strand at 1567.327 kb on + strand at 1567.335 kb on - strand at 1567.422 kb on - strand at 1567.422 kb on - strand at 1567.595 kb on - strand at 1567.605 kb on - strand at 1567.607 kb on + strand at 1567.607 kb on + strand at 1567.615 kb on - strand at 1567.628 kb on - strand at 1567.696 kb on + strand, within CCNA_01457 at 1567.770 kb on - strand, within CCNA_01457 at 1567.792 kb on + strand, within CCNA_01457 at 1567.896 kb on + strand at 1567.896 kb on + strand at 1567.903 kb on + strand at 1567.903 kb on + strand at 1567.904 kb on - strand at 1567.913 kb on + strand, within CCNA_01458 at 1567.922 kb on + strand, within CCNA_01458 at 1567.997 kb on + strand, within CCNA_01458 at 1567.997 kb on - strand at 1568.024 kb on + strand, within CCNA_01458 at 1568.059 kb on + strand, within CCNA_01458 at 1568.100 kb on + strand, within CCNA_01458 at 1568.130 kb on + strand, within CCNA_01458 at 1568.135 kb on + strand, within CCNA_01458 at 1568.135 kb on + strand, within CCNA_01458 at 1568.143 kb on - strand, within CCNA_01458 at 1568.143 kb on - strand, within CCNA_01458 at 1568.143 kb on - strand, within CCNA_01458 at 1568.143 kb on - strand, within CCNA_01458 at 1568.227 kb on + strand, within CCNA_01459 at 1568.240 kb on + strand, within CCNA_01459 at 1568.240 kb on + strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.250 kb on - strand, within CCNA_01459 at 1568.270 kb on + strand, within CCNA_01459 at 1568.285 kb on + strand, within CCNA_01459 at 1568.287 kb on - strand, within CCNA_01459 at 1568.373 kb on + strand, within CCNA_01459 at 1568.394 kb on - strand, within CCNA_01459 at 1568.440 kb on + strand at 1568.448 kb on - strand at 1568.448 kb on - strand at 1568.448 kb on - strand at 1568.448 kb on - strand at 1568.482 kb on + strand at 1568.500 kb on - strand at 1568.500 kb on - strand at 1568.504 kb on - strand at 1568.572 kb on - strand, within CCNA_01460 at 1568.574 kb on - strand, within CCNA_01460 at 1568.574 kb on - strand, within CCNA_01460 at 1568.606 kb on - strand, within CCNA_01460 at 1568.617 kb on + strand, within CCNA_01460 at 1568.637 kb on - strand, within CCNA_01460 at 1568.663 kb on + strand, within CCNA_01460 at 1568.666 kb on - strand, within CCNA_01460 at 1568.671 kb on - strand, within CCNA_01460 at 1568.681 kb on - strand, within CCNA_01460 at 1568.681 kb on - strand, within CCNA_01460 at 1568.682 kb on - strand, within CCNA_01460 at 1568.749 kb on + strand at 1568.831 kb on + strand, within CCNA_01461 at 1568.831 kb on + strand, within CCNA_01461 at 1568.842 kb on + strand, within CCNA_01461 at 1568.850 kb on - strand, within CCNA_01461 at 1568.856 kb on - strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.940 kb on + strand, within CCNA_01461 at 1568.948 kb on - strand, within CCNA_01461 at 1568.952 kb on + strand, within CCNA_01461 at 1569.007 kb on + strand at 1569.015 kb on - strand, within CCNA_01461 at 1569.021 kb on + strand, within CCNA_01461 at 1569.030 kb on - strand, within CCNA_01461 at 1569.031 kb on + strand at 1569.055 kb on + strand at 1569.063 kb on - strand at 1569.063 kb on - strand at 1569.086 kb on + strand at 1569.096 kb on + strand at 1569.104 kb on - strand at 1569.129 kb on - strand at 1569.177 kb on - strand at 1569.199 kb on - strand at 1569.281 kb on + strand at 1569.299 kb on + strand at 1569.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,567,240 + -0.1 1,567,240 + +0.1 1,567,248 - +0.7 1,567,289 + -1.5 1,567,303 - +1.2 1,567,318 - -2.5 1,567,325 - -0.9 1,567,325 - -1.7 1,567,327 + +0.2 1,567,335 - -0.4 1,567,422 - +2.2 1,567,422 - -0.5 1,567,595 - -0.9 1,567,605 - -1.0 1,567,607 + -0.9 1,567,607 + +0.3 1,567,615 - -1.0 1,567,628 - +2.7 1,567,696 + CCNA_01457 0.28 -1.7 1,567,770 - CCNA_01457 0.58 +0.4 1,567,792 + CCNA_01457 0.66 +0.1 1,567,896 + -2.3 1,567,896 + -2.4 1,567,903 + +1.8 1,567,903 + -2.3 1,567,904 - +0.1 1,567,913 + CCNA_01458 0.11 -1.5 1,567,922 + CCNA_01458 0.14 +0.4 1,567,997 + CCNA_01458 0.38 -2.4 1,567,997 - +1.1 1,568,024 + CCNA_01458 0.47 -2.2 1,568,059 + CCNA_01458 0.58 -0.3 1,568,100 + CCNA_01458 0.72 +0.4 1,568,130 + CCNA_01458 0.81 -0.6 1,568,135 + CCNA_01458 0.83 -0.9 1,568,135 + CCNA_01458 0.83 -0.1 1,568,143 - CCNA_01458 0.85 +0.8 1,568,143 - CCNA_01458 0.85 +0.3 1,568,143 - CCNA_01458 0.85 +0.0 1,568,143 - CCNA_01458 0.85 +0.3 1,568,227 + CCNA_01459 0.15 -1.4 1,568,240 + CCNA_01459 0.20 -0.9 1,568,240 + CCNA_01459 0.20 +0.8 1,568,248 - CCNA_01459 0.23 -0.6 1,568,248 - CCNA_01459 0.23 -0.9 1,568,248 - CCNA_01459 0.23 +0.6 1,568,248 - CCNA_01459 0.23 -1.3 1,568,250 - CCNA_01459 0.24 -1.2 1,568,270 + CCNA_01459 0.32 -1.1 1,568,285 + CCNA_01459 0.38 -2.0 1,568,287 - CCNA_01459 0.38 -0.6 1,568,373 + CCNA_01459 0.72 -1.4 1,568,394 - CCNA_01459 0.80 -0.0 1,568,440 + -0.5 1,568,448 - -0.6 1,568,448 - -1.3 1,568,448 - -0.5 1,568,448 - -0.7 1,568,482 + -1.1 1,568,500 - +0.5 1,568,500 - +0.1 1,568,504 - -1.8 1,568,572 - CCNA_01460 0.25 +0.1 1,568,574 - CCNA_01460 0.26 +2.4 1,568,574 - CCNA_01460 0.26 -0.9 1,568,606 - CCNA_01460 0.40 +0.6 1,568,617 + CCNA_01460 0.45 +1.0 1,568,637 - CCNA_01460 0.54 -0.4 1,568,663 + CCNA_01460 0.66 +0.3 1,568,666 - CCNA_01460 0.68 -1.4 1,568,671 - CCNA_01460 0.70 -1.7 1,568,681 - CCNA_01460 0.74 -1.8 1,568,681 - CCNA_01460 0.74 +0.9 1,568,682 - CCNA_01460 0.75 -1.2 1,568,749 + -0.0 1,568,831 + CCNA_01461 0.22 +0.3 1,568,831 + CCNA_01461 0.22 -0.7 1,568,842 + CCNA_01461 0.25 -0.8 1,568,850 - CCNA_01461 0.28 +2.4 1,568,856 - CCNA_01461 0.30 -0.1 1,568,907 + CCNA_01461 0.47 +0.1 1,568,907 + CCNA_01461 0.47 +0.6 1,568,907 + CCNA_01461 0.47 +0.1 1,568,907 + CCNA_01461 0.47 -0.9 1,568,907 + CCNA_01461 0.47 +0.3 1,568,907 + CCNA_01461 0.47 -0.6 1,568,907 + CCNA_01461 0.47 +1.4 1,568,915 - CCNA_01461 0.49 +0.6 1,568,915 - CCNA_01461 0.49 -1.0 1,568,915 - CCNA_01461 0.49 -1.5 1,568,915 - CCNA_01461 0.49 -1.3 1,568,915 - CCNA_01461 0.49 +0.3 1,568,915 - CCNA_01461 0.49 +2.0 1,568,915 - CCNA_01461 0.49 +0.8 1,568,915 - CCNA_01461 0.49 +0.4 1,568,940 + CCNA_01461 0.58 +2.4 1,568,948 - CCNA_01461 0.60 -2.0 1,568,952 + CCNA_01461 0.61 +1.4 1,569,007 + +1.9 1,569,015 - CCNA_01461 0.82 -0.6 1,569,021 + CCNA_01461 0.84 -0.9 1,569,030 - CCNA_01461 0.87 -0.1 1,569,031 + +0.6 1,569,055 + -0.8 1,569,063 - -2.7 1,569,063 - +0.9 1,569,086 + -0.1 1,569,096 + -1.7 1,569,104 - +0.1 1,569,129 - +0.1 1,569,177 - -1.7 1,569,199 - -1.1 1,569,281 + -0.4 1,569,299 + -0.7 1,569,367 + -1.1
Or see this region's nucleotide sequence