Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01459

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01457 and CCNA_01458 are separated by 2 nucleotidesCCNA_01458 and CCNA_01459 are separated by 0 nucleotidesCCNA_01459 and CCNA_01460 are separated by 72 nucleotidesCCNA_01460 and CCNA_01461 are separated by 27 nucleotidesCCNA_01461 and CCNA_01462 are separated by 224 nucleotides CCNA_01457: CCNA_01457 - hypothetical protein, at 1,567,625 to 1,567,876 _01457 CCNA_01458: CCNA_01458 - hypothetical protein, at 1,567,879 to 1,568,187 _01458 CCNA_01459: CCNA_01459 - hypothetical protein, at 1,568,188 to 1,568,445 _01459 CCNA_01460: CCNA_01460 - hypothetical protein, at 1,568,518 to 1,568,736 _01460 CCNA_01461: CCNA_01461 - hypothetical protein, at 1,568,764 to 1,569,069 _01461 CCNA_01462: CCNA_01462 - lactate 2-monooxygenase, at 1,569,294 to 1,570,469 _01462 Position (kb) 1568 1569Strain fitness (log2 ratio) -2 -1 0 1 2at 1567.240 kb on + strandat 1567.240 kb on + strandat 1567.248 kb on - strandat 1567.289 kb on + strandat 1567.303 kb on - strandat 1567.318 kb on - strandat 1567.325 kb on - strandat 1567.325 kb on - strandat 1567.327 kb on + strandat 1567.335 kb on - strandat 1567.422 kb on - strandat 1567.422 kb on - strandat 1567.595 kb on - strandat 1567.605 kb on - strandat 1567.607 kb on + strandat 1567.607 kb on + strandat 1567.615 kb on - strandat 1567.628 kb on - strandat 1567.696 kb on + strand, within CCNA_01457at 1567.770 kb on - strand, within CCNA_01457at 1567.792 kb on + strand, within CCNA_01457at 1567.896 kb on + strandat 1567.896 kb on + strandat 1567.903 kb on + strandat 1567.903 kb on + strandat 1567.904 kb on - strandat 1567.913 kb on + strand, within CCNA_01458at 1567.922 kb on + strand, within CCNA_01458at 1567.997 kb on + strand, within CCNA_01458at 1567.997 kb on - strandat 1568.024 kb on + strand, within CCNA_01458at 1568.059 kb on + strand, within CCNA_01458at 1568.100 kb on + strand, within CCNA_01458at 1568.130 kb on + strand, within CCNA_01458at 1568.135 kb on + strand, within CCNA_01458at 1568.135 kb on + strand, within CCNA_01458at 1568.143 kb on - strand, within CCNA_01458at 1568.143 kb on - strand, within CCNA_01458at 1568.143 kb on - strand, within CCNA_01458at 1568.143 kb on - strand, within CCNA_01458at 1568.227 kb on + strand, within CCNA_01459at 1568.240 kb on + strand, within CCNA_01459at 1568.240 kb on + strand, within CCNA_01459at 1568.248 kb on - strand, within CCNA_01459at 1568.248 kb on - strand, within CCNA_01459at 1568.248 kb on - strand, within CCNA_01459at 1568.248 kb on - strand, within CCNA_01459at 1568.250 kb on - strand, within CCNA_01459at 1568.270 kb on + strand, within CCNA_01459at 1568.285 kb on + strand, within CCNA_01459at 1568.287 kb on - strand, within CCNA_01459at 1568.373 kb on + strand, within CCNA_01459at 1568.394 kb on - strand, within CCNA_01459at 1568.440 kb on + strandat 1568.448 kb on - strandat 1568.448 kb on - strandat 1568.448 kb on - strandat 1568.448 kb on - strandat 1568.482 kb on + strandat 1568.500 kb on - strandat 1568.500 kb on - strandat 1568.504 kb on - strandat 1568.572 kb on - strand, within CCNA_01460at 1568.574 kb on - strand, within CCNA_01460at 1568.574 kb on - strand, within CCNA_01460at 1568.606 kb on - strand, within CCNA_01460at 1568.617 kb on + strand, within CCNA_01460at 1568.637 kb on - strand, within CCNA_01460at 1568.663 kb on + strand, within CCNA_01460at 1568.666 kb on - strand, within CCNA_01460at 1568.671 kb on - strand, within CCNA_01460at 1568.681 kb on - strand, within CCNA_01460at 1568.681 kb on - strand, within CCNA_01460at 1568.682 kb on - strand, within CCNA_01460at 1568.749 kb on + strandat 1568.831 kb on + strand, within CCNA_01461at 1568.831 kb on + strand, within CCNA_01461at 1568.842 kb on + strand, within CCNA_01461at 1568.850 kb on - strand, within CCNA_01461at 1568.856 kb on - strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.907 kb on + strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.915 kb on - strand, within CCNA_01461at 1568.940 kb on + strand, within CCNA_01461at 1568.948 kb on - strand, within CCNA_01461at 1568.952 kb on + strand, within CCNA_01461at 1569.007 kb on + strandat 1569.015 kb on - strand, within CCNA_01461at 1569.021 kb on + strand, within CCNA_01461at 1569.030 kb on - strand, within CCNA_01461at 1569.031 kb on + strandat 1569.055 kb on + strandat 1569.063 kb on - strandat 1569.063 kb on - strandat 1569.086 kb on + strandat 1569.096 kb on + strandat 1569.104 kb on - strandat 1569.129 kb on - strandat 1569.177 kb on - strandat 1569.199 kb on - strandat 1569.281 kb on + strandat 1569.299 kb on + strandat 1569.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,567,240 + -0.1
1,567,240 + +0.1
1,567,248 - +0.7
1,567,289 + -1.5
1,567,303 - +1.2
1,567,318 - -2.5
1,567,325 - -0.9
1,567,325 - -1.7
1,567,327 + +0.2
1,567,335 - -0.4
1,567,422 - +2.2
1,567,422 - -0.5
1,567,595 - -0.9
1,567,605 - -1.0
1,567,607 + -0.9
1,567,607 + +0.3
1,567,615 - -1.0
1,567,628 - +2.7
1,567,696 + CCNA_01457 0.28 -1.7
1,567,770 - CCNA_01457 0.58 +0.4
1,567,792 + CCNA_01457 0.66 +0.1
1,567,896 + -2.3
1,567,896 + -2.4
1,567,903 + +1.8
1,567,903 + -2.3
1,567,904 - +0.1
1,567,913 + CCNA_01458 0.11 -1.5
1,567,922 + CCNA_01458 0.14 +0.4
1,567,997 + CCNA_01458 0.38 -2.4
1,567,997 - +1.1
1,568,024 + CCNA_01458 0.47 -2.2
1,568,059 + CCNA_01458 0.58 -0.3
1,568,100 + CCNA_01458 0.72 +0.4
1,568,130 + CCNA_01458 0.81 -0.6
1,568,135 + CCNA_01458 0.83 -0.9
1,568,135 + CCNA_01458 0.83 -0.1
1,568,143 - CCNA_01458 0.85 +0.8
1,568,143 - CCNA_01458 0.85 +0.3
1,568,143 - CCNA_01458 0.85 +0.0
1,568,143 - CCNA_01458 0.85 +0.3
1,568,227 + CCNA_01459 0.15 -1.4
1,568,240 + CCNA_01459 0.20 -0.9
1,568,240 + CCNA_01459 0.20 +0.8
1,568,248 - CCNA_01459 0.23 -0.6
1,568,248 - CCNA_01459 0.23 -0.9
1,568,248 - CCNA_01459 0.23 +0.6
1,568,248 - CCNA_01459 0.23 -1.3
1,568,250 - CCNA_01459 0.24 -1.2
1,568,270 + CCNA_01459 0.32 -1.1
1,568,285 + CCNA_01459 0.38 -2.0
1,568,287 - CCNA_01459 0.38 -0.6
1,568,373 + CCNA_01459 0.72 -1.4
1,568,394 - CCNA_01459 0.80 -0.0
1,568,440 + -0.5
1,568,448 - -0.6
1,568,448 - -1.3
1,568,448 - -0.5
1,568,448 - -0.7
1,568,482 + -1.1
1,568,500 - +0.5
1,568,500 - +0.1
1,568,504 - -1.8
1,568,572 - CCNA_01460 0.25 +0.1
1,568,574 - CCNA_01460 0.26 +2.4
1,568,574 - CCNA_01460 0.26 -0.9
1,568,606 - CCNA_01460 0.40 +0.6
1,568,617 + CCNA_01460 0.45 +1.0
1,568,637 - CCNA_01460 0.54 -0.4
1,568,663 + CCNA_01460 0.66 +0.3
1,568,666 - CCNA_01460 0.68 -1.4
1,568,671 - CCNA_01460 0.70 -1.7
1,568,681 - CCNA_01460 0.74 -1.8
1,568,681 - CCNA_01460 0.74 +0.9
1,568,682 - CCNA_01460 0.75 -1.2
1,568,749 + -0.0
1,568,831 + CCNA_01461 0.22 +0.3
1,568,831 + CCNA_01461 0.22 -0.7
1,568,842 + CCNA_01461 0.25 -0.8
1,568,850 - CCNA_01461 0.28 +2.4
1,568,856 - CCNA_01461 0.30 -0.1
1,568,907 + CCNA_01461 0.47 +0.1
1,568,907 + CCNA_01461 0.47 +0.6
1,568,907 + CCNA_01461 0.47 +0.1
1,568,907 + CCNA_01461 0.47 -0.9
1,568,907 + CCNA_01461 0.47 +0.3
1,568,907 + CCNA_01461 0.47 -0.6
1,568,907 + CCNA_01461 0.47 +1.4
1,568,915 - CCNA_01461 0.49 +0.6
1,568,915 - CCNA_01461 0.49 -1.0
1,568,915 - CCNA_01461 0.49 -1.5
1,568,915 - CCNA_01461 0.49 -1.3
1,568,915 - CCNA_01461 0.49 +0.3
1,568,915 - CCNA_01461 0.49 +2.0
1,568,915 - CCNA_01461 0.49 +0.8
1,568,915 - CCNA_01461 0.49 +0.4
1,568,940 + CCNA_01461 0.58 +2.4
1,568,948 - CCNA_01461 0.60 -2.0
1,568,952 + CCNA_01461 0.61 +1.4
1,569,007 + +1.9
1,569,015 - CCNA_01461 0.82 -0.6
1,569,021 + CCNA_01461 0.84 -0.9
1,569,030 - CCNA_01461 0.87 -0.1
1,569,031 + +0.6
1,569,055 + -0.8
1,569,063 - -2.7
1,569,063 - +0.9
1,569,086 + -0.1
1,569,096 + -1.7
1,569,104 - +0.1
1,569,129 - +0.1
1,569,177 - -1.7
1,569,199 - -1.1
1,569,281 + -0.4
1,569,299 + -0.7
1,569,367 + -1.1

Or see this region's nucleotide sequence