Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01406 and CCNA_01407 are separated by 56 nucleotides CCNA_01407 and CCNA_01408 overlap by 4 nucleotides CCNA_01408 and CCNA_01409 overlap by 4 nucleotides
CCNA_01406: CCNA_01406 - metal-dependent hydrolase, at 1,524,621 to 1,525,478
_01406
CCNA_01407: CCNA_01407 - hypothetical protein, at 1,525,535 to 1,526,167
_01407
CCNA_01408: CCNA_01408 - phosphohydrolase, MutT/nudix family, at 1,526,164 to 1,526,559
_01408
CCNA_01409: CCNA_01409 - delta-aminolevulinic acid dehydratase, at 1,526,556 to 1,527,560
_01409
Position (kb)
1525
1526
1527 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1524.593 kb on + strand at 1524.593 kb on + strand at 1524.626 kb on - strand at 1524.640 kb on + strand at 1524.653 kb on - strand at 1524.703 kb on - strand at 1524.703 kb on - strand at 1524.704 kb on - strand at 1524.714 kb on - strand, within CCNA_01406 at 1524.721 kb on + strand, within CCNA_01406 at 1524.767 kb on - strand, within CCNA_01406 at 1524.783 kb on + strand, within CCNA_01406 at 1524.783 kb on + strand, within CCNA_01406 at 1524.791 kb on - strand, within CCNA_01406 at 1524.791 kb on - strand, within CCNA_01406 at 1524.913 kb on + strand, within CCNA_01406 at 1524.921 kb on - strand, within CCNA_01406 at 1524.932 kb on + strand, within CCNA_01406 at 1524.955 kb on + strand at 1524.956 kb on - strand at 1524.963 kb on - strand, within CCNA_01406 at 1524.985 kb on - strand, within CCNA_01406 at 1524.987 kb on - strand, within CCNA_01406 at 1525.010 kb on + strand, within CCNA_01406 at 1525.063 kb on + strand, within CCNA_01406 at 1525.071 kb on + strand, within CCNA_01406 at 1525.095 kb on - strand, within CCNA_01406 at 1525.101 kb on + strand, within CCNA_01406 at 1525.210 kb on - strand, within CCNA_01406 at 1525.251 kb on - strand, within CCNA_01406 at 1525.252 kb on + strand, within CCNA_01406 at 1525.282 kb on + strand, within CCNA_01406 at 1525.287 kb on + strand, within CCNA_01406 at 1525.295 kb on - strand, within CCNA_01406 at 1525.342 kb on + strand, within CCNA_01406 at 1525.350 kb on - strand, within CCNA_01406 at 1525.350 kb on - strand, within CCNA_01406 at 1525.350 kb on - strand, within CCNA_01406 at 1525.440 kb on + strand at 1525.467 kb on - strand at 1525.473 kb on + strand at 1525.488 kb on + strand at 1525.496 kb on - strand at 1525.507 kb on - strand at 1525.510 kb on + strand at 1525.524 kb on - strand at 1525.591 kb on - strand at 1525.599 kb on + strand, within CCNA_01407 at 1525.647 kb on + strand, within CCNA_01407 at 1525.675 kb on - strand, within CCNA_01407 at 1525.675 kb on - strand, within CCNA_01407 at 1525.675 kb on - strand, within CCNA_01407 at 1525.687 kb on + strand, within CCNA_01407 at 1525.690 kb on - strand, within CCNA_01407 at 1525.701 kb on + strand, within CCNA_01407 at 1525.842 kb on + strand, within CCNA_01407 at 1525.896 kb on + strand at 1525.922 kb on + strand, within CCNA_01407 at 1525.962 kb on + strand, within CCNA_01407 at 1526.028 kb on - strand, within CCNA_01407 at 1526.043 kb on + strand, within CCNA_01407 at 1526.051 kb on - strand, within CCNA_01407 at 1526.051 kb on - strand, within CCNA_01407 at 1526.075 kb on + strand, within CCNA_01407 at 1526.075 kb on + strand, within CCNA_01407 at 1526.083 kb on - strand, within CCNA_01407 at 1526.112 kb on + strand at 1526.246 kb on + strand, within CCNA_01408 at 1526.246 kb on + strand, within CCNA_01408 at 1526.254 kb on - strand, within CCNA_01408 at 1526.254 kb on - strand, within CCNA_01408 at 1526.379 kb on + strand, within CCNA_01408 at 1526.392 kb on + strand, within CCNA_01408 at 1526.392 kb on + strand, within CCNA_01408 at 1526.393 kb on - strand, within CCNA_01408 at 1526.405 kb on - strand, within CCNA_01408 at 1526.433 kb on - strand, within CCNA_01408 at 1526.464 kb on - strand, within CCNA_01408 at 1526.517 kb on - strand, within CCNA_01408 at 1526.517 kb on - strand, within CCNA_01408 at 1526.542 kb on + strand at 1526.554 kb on + strand at 1526.554 kb on + strand at 1526.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,524,593 + -0.4 1,524,593 + +0.5 1,524,626 - +0.2 1,524,640 + -0.9 1,524,653 - +0.0 1,524,703 - +0.4 1,524,703 - +1.0 1,524,704 - +0.2 1,524,714 - CCNA_01406 0.11 +0.4 1,524,721 + CCNA_01406 0.12 -0.2 1,524,767 - CCNA_01406 0.17 +0.6 1,524,783 + CCNA_01406 0.19 +1.8 1,524,783 + CCNA_01406 0.19 -1.2 1,524,791 - CCNA_01406 0.20 -0.3 1,524,791 - CCNA_01406 0.20 -0.2 1,524,913 + CCNA_01406 0.34 +0.2 1,524,921 - CCNA_01406 0.35 +1.5 1,524,932 + CCNA_01406 0.36 -1.7 1,524,955 + +1.1 1,524,956 - +1.4 1,524,963 - CCNA_01406 0.40 +0.0 1,524,985 - CCNA_01406 0.42 +0.2 1,524,987 - CCNA_01406 0.43 +0.5 1,525,010 + CCNA_01406 0.45 +2.7 1,525,063 + CCNA_01406 0.52 -0.9 1,525,071 + CCNA_01406 0.52 -2.4 1,525,095 - CCNA_01406 0.55 +0.0 1,525,101 + CCNA_01406 0.56 +1.1 1,525,210 - CCNA_01406 0.69 +0.1 1,525,251 - CCNA_01406 0.73 +0.7 1,525,252 + CCNA_01406 0.74 -1.0 1,525,282 + CCNA_01406 0.77 +0.2 1,525,287 + CCNA_01406 0.78 -2.3 1,525,295 - CCNA_01406 0.79 +3.4 1,525,342 + CCNA_01406 0.84 -1.0 1,525,350 - CCNA_01406 0.85 +0.2 1,525,350 - CCNA_01406 0.85 -0.7 1,525,350 - CCNA_01406 0.85 +1.3 1,525,440 + +0.9 1,525,467 - +1.2 1,525,473 + +1.6 1,525,488 + +0.6 1,525,496 - +0.3 1,525,507 - +0.3 1,525,510 + -0.5 1,525,524 - -0.3 1,525,591 - -2.2 1,525,599 + CCNA_01407 0.10 -1.7 1,525,647 + CCNA_01407 0.18 -1.3 1,525,675 - CCNA_01407 0.22 -1.7 1,525,675 - CCNA_01407 0.22 -1.2 1,525,675 - CCNA_01407 0.22 +0.5 1,525,687 + CCNA_01407 0.24 +0.2 1,525,690 - CCNA_01407 0.24 -2.0 1,525,701 + CCNA_01407 0.26 -2.4 1,525,842 + CCNA_01407 0.48 -0.6 1,525,896 + +1.1 1,525,922 + CCNA_01407 0.61 -2.1 1,525,962 + CCNA_01407 0.67 -0.0 1,526,028 - CCNA_01407 0.78 -1.2 1,526,043 + CCNA_01407 0.80 +1.4 1,526,051 - CCNA_01407 0.82 +0.8 1,526,051 - CCNA_01407 0.82 -0.2 1,526,075 + CCNA_01407 0.85 +0.4 1,526,075 + CCNA_01407 0.85 -0.7 1,526,083 - CCNA_01407 0.87 -0.2 1,526,112 + -0.0 1,526,246 + CCNA_01408 0.21 -0.7 1,526,246 + CCNA_01408 0.21 +2.5 1,526,254 - CCNA_01408 0.23 +1.4 1,526,254 - CCNA_01408 0.23 -1.4 1,526,379 + CCNA_01408 0.54 -1.4 1,526,392 + CCNA_01408 0.58 -1.5 1,526,392 + CCNA_01408 0.58 -0.7 1,526,393 - CCNA_01408 0.58 -0.6 1,526,405 - CCNA_01408 0.61 -1.9 1,526,433 - CCNA_01408 0.68 +1.0 1,526,464 - CCNA_01408 0.76 +2.8 1,526,517 - CCNA_01408 0.89 -0.2 1,526,517 - CCNA_01408 0.89 +1.3 1,526,542 + -0.7 1,526,554 + +0.2 1,526,554 + +0.8 1,526,581 - -0.6
Or see this region's nucleotide sequence