Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01407

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01406 and CCNA_01407 are separated by 56 nucleotidesCCNA_01407 and CCNA_01408 overlap by 4 nucleotidesCCNA_01408 and CCNA_01409 overlap by 4 nucleotides CCNA_01406: CCNA_01406 - metal-dependent hydrolase, at 1,524,621 to 1,525,478 _01406 CCNA_01407: CCNA_01407 - hypothetical protein, at 1,525,535 to 1,526,167 _01407 CCNA_01408: CCNA_01408 - phosphohydrolase, MutT/nudix family, at 1,526,164 to 1,526,559 _01408 CCNA_01409: CCNA_01409 - delta-aminolevulinic acid dehydratase, at 1,526,556 to 1,527,560 _01409 Position (kb) 1525 1526 1527Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1524.593 kb on + strandat 1524.593 kb on + strandat 1524.626 kb on - strandat 1524.640 kb on + strandat 1524.653 kb on - strandat 1524.703 kb on - strandat 1524.703 kb on - strandat 1524.704 kb on - strandat 1524.714 kb on - strand, within CCNA_01406at 1524.721 kb on + strand, within CCNA_01406at 1524.767 kb on - strand, within CCNA_01406at 1524.783 kb on + strand, within CCNA_01406at 1524.783 kb on + strand, within CCNA_01406at 1524.791 kb on - strand, within CCNA_01406at 1524.791 kb on - strand, within CCNA_01406at 1524.913 kb on + strand, within CCNA_01406at 1524.921 kb on - strand, within CCNA_01406at 1524.932 kb on + strand, within CCNA_01406at 1524.955 kb on + strandat 1524.956 kb on - strandat 1524.963 kb on - strand, within CCNA_01406at 1524.985 kb on - strand, within CCNA_01406at 1524.987 kb on - strand, within CCNA_01406at 1525.010 kb on + strand, within CCNA_01406at 1525.063 kb on + strand, within CCNA_01406at 1525.071 kb on + strand, within CCNA_01406at 1525.095 kb on - strand, within CCNA_01406at 1525.101 kb on + strand, within CCNA_01406at 1525.210 kb on - strand, within CCNA_01406at 1525.251 kb on - strand, within CCNA_01406at 1525.252 kb on + strand, within CCNA_01406at 1525.282 kb on + strand, within CCNA_01406at 1525.287 kb on + strand, within CCNA_01406at 1525.295 kb on - strand, within CCNA_01406at 1525.342 kb on + strand, within CCNA_01406at 1525.350 kb on - strand, within CCNA_01406at 1525.350 kb on - strand, within CCNA_01406at 1525.350 kb on - strand, within CCNA_01406at 1525.440 kb on + strandat 1525.467 kb on - strandat 1525.473 kb on + strandat 1525.488 kb on + strandat 1525.496 kb on - strandat 1525.507 kb on - strandat 1525.510 kb on + strandat 1525.524 kb on - strandat 1525.591 kb on - strandat 1525.599 kb on + strand, within CCNA_01407at 1525.647 kb on + strand, within CCNA_01407at 1525.675 kb on - strand, within CCNA_01407at 1525.675 kb on - strand, within CCNA_01407at 1525.675 kb on - strand, within CCNA_01407at 1525.687 kb on + strand, within CCNA_01407at 1525.690 kb on - strand, within CCNA_01407at 1525.701 kb on + strand, within CCNA_01407at 1525.842 kb on + strand, within CCNA_01407at 1525.896 kb on + strandat 1525.922 kb on + strand, within CCNA_01407at 1525.962 kb on + strand, within CCNA_01407at 1526.028 kb on - strand, within CCNA_01407at 1526.043 kb on + strand, within CCNA_01407at 1526.051 kb on - strand, within CCNA_01407at 1526.051 kb on - strand, within CCNA_01407at 1526.075 kb on + strand, within CCNA_01407at 1526.075 kb on + strand, within CCNA_01407at 1526.083 kb on - strand, within CCNA_01407at 1526.112 kb on + strandat 1526.246 kb on + strand, within CCNA_01408at 1526.246 kb on + strand, within CCNA_01408at 1526.254 kb on - strand, within CCNA_01408at 1526.254 kb on - strand, within CCNA_01408at 1526.379 kb on + strand, within CCNA_01408at 1526.392 kb on + strand, within CCNA_01408at 1526.392 kb on + strand, within CCNA_01408at 1526.393 kb on - strand, within CCNA_01408at 1526.405 kb on - strand, within CCNA_01408at 1526.433 kb on - strand, within CCNA_01408at 1526.464 kb on - strand, within CCNA_01408at 1526.517 kb on - strand, within CCNA_01408at 1526.517 kb on - strand, within CCNA_01408at 1526.542 kb on + strandat 1526.554 kb on + strandat 1526.554 kb on + strandat 1526.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,524,593 + -0.4
1,524,593 + +0.5
1,524,626 - +0.2
1,524,640 + -0.9
1,524,653 - +0.0
1,524,703 - +0.4
1,524,703 - +1.0
1,524,704 - +0.2
1,524,714 - CCNA_01406 0.11 +0.4
1,524,721 + CCNA_01406 0.12 -0.2
1,524,767 - CCNA_01406 0.17 +0.6
1,524,783 + CCNA_01406 0.19 +1.8
1,524,783 + CCNA_01406 0.19 -1.2
1,524,791 - CCNA_01406 0.20 -0.3
1,524,791 - CCNA_01406 0.20 -0.2
1,524,913 + CCNA_01406 0.34 +0.2
1,524,921 - CCNA_01406 0.35 +1.5
1,524,932 + CCNA_01406 0.36 -1.7
1,524,955 + +1.1
1,524,956 - +1.4
1,524,963 - CCNA_01406 0.40 +0.0
1,524,985 - CCNA_01406 0.42 +0.2
1,524,987 - CCNA_01406 0.43 +0.5
1,525,010 + CCNA_01406 0.45 +2.7
1,525,063 + CCNA_01406 0.52 -0.9
1,525,071 + CCNA_01406 0.52 -2.4
1,525,095 - CCNA_01406 0.55 +0.0
1,525,101 + CCNA_01406 0.56 +1.1
1,525,210 - CCNA_01406 0.69 +0.1
1,525,251 - CCNA_01406 0.73 +0.7
1,525,252 + CCNA_01406 0.74 -1.0
1,525,282 + CCNA_01406 0.77 +0.2
1,525,287 + CCNA_01406 0.78 -2.3
1,525,295 - CCNA_01406 0.79 +3.4
1,525,342 + CCNA_01406 0.84 -1.0
1,525,350 - CCNA_01406 0.85 +0.2
1,525,350 - CCNA_01406 0.85 -0.7
1,525,350 - CCNA_01406 0.85 +1.3
1,525,440 + +0.9
1,525,467 - +1.2
1,525,473 + +1.6
1,525,488 + +0.6
1,525,496 - +0.3
1,525,507 - +0.3
1,525,510 + -0.5
1,525,524 - -0.3
1,525,591 - -2.2
1,525,599 + CCNA_01407 0.10 -1.7
1,525,647 + CCNA_01407 0.18 -1.3
1,525,675 - CCNA_01407 0.22 -1.7
1,525,675 - CCNA_01407 0.22 -1.2
1,525,675 - CCNA_01407 0.22 +0.5
1,525,687 + CCNA_01407 0.24 +0.2
1,525,690 - CCNA_01407 0.24 -2.0
1,525,701 + CCNA_01407 0.26 -2.4
1,525,842 + CCNA_01407 0.48 -0.6
1,525,896 + +1.1
1,525,922 + CCNA_01407 0.61 -2.1
1,525,962 + CCNA_01407 0.67 -0.0
1,526,028 - CCNA_01407 0.78 -1.2
1,526,043 + CCNA_01407 0.80 +1.4
1,526,051 - CCNA_01407 0.82 +0.8
1,526,051 - CCNA_01407 0.82 -0.2
1,526,075 + CCNA_01407 0.85 +0.4
1,526,075 + CCNA_01407 0.85 -0.7
1,526,083 - CCNA_01407 0.87 -0.2
1,526,112 + -0.0
1,526,246 + CCNA_01408 0.21 -0.7
1,526,246 + CCNA_01408 0.21 +2.5
1,526,254 - CCNA_01408 0.23 +1.4
1,526,254 - CCNA_01408 0.23 -1.4
1,526,379 + CCNA_01408 0.54 -1.4
1,526,392 + CCNA_01408 0.58 -1.5
1,526,392 + CCNA_01408 0.58 -0.7
1,526,393 - CCNA_01408 0.58 -0.6
1,526,405 - CCNA_01408 0.61 -1.9
1,526,433 - CCNA_01408 0.68 +1.0
1,526,464 - CCNA_01408 0.76 +2.8
1,526,517 - CCNA_01408 0.89 -0.2
1,526,517 - CCNA_01408 0.89 +1.3
1,526,542 + -0.7
1,526,554 + +0.2
1,526,554 + +0.8
1,526,581 - -0.6

Or see this region's nucleotide sequence