Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01400

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01399 and CCNA_01400 are separated by 26 nucleotidesCCNA_01400 and CCNA_01403 are separated by 480 nucleotides CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088 _01399 CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453 _01400 CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833 _01403 Position (kb) 1520 1521Strain fitness (log2 ratio) -2 -1 0 1 2at 1519.123 kb on + strand, within CCNA_01399at 1519.182 kb on + strand, within CCNA_01399at 1519.201 kb on + strand, within CCNA_01399at 1519.204 kb on - strand, within CCNA_01399at 1519.206 kb on + strand, within CCNA_01399at 1519.209 kb on - strand, within CCNA_01399at 1519.214 kb on - strand, within CCNA_01399at 1519.219 kb on - strand, within CCNA_01399at 1519.222 kb on + strand, within CCNA_01399at 1519.229 kb on - strand, within CCNA_01399at 1519.229 kb on - strand, within CCNA_01399at 1519.235 kb on - strand, within CCNA_01399at 1519.244 kb on - strand, within CCNA_01399at 1519.246 kb on + strand, within CCNA_01399at 1519.265 kb on + strand, within CCNA_01399at 1519.310 kb on - strand, within CCNA_01399at 1519.313 kb on + strand, within CCNA_01399at 1519.313 kb on + strandat 1519.321 kb on + strand, within CCNA_01399at 1519.323 kb on + strand, within CCNA_01399at 1519.326 kb on + strand, within CCNA_01399at 1519.329 kb on - strand, within CCNA_01399at 1519.361 kb on + strand, within CCNA_01399at 1519.361 kb on + strand, within CCNA_01399at 1519.366 kb on + strand, within CCNA_01399at 1519.369 kb on - strand, within CCNA_01399at 1519.369 kb on - strand, within CCNA_01399at 1519.379 kb on - strand, within CCNA_01399at 1519.434 kb on - strand, within CCNA_01399at 1519.434 kb on - strand, within CCNA_01399at 1519.589 kb on - strand, within CCNA_01399at 1519.609 kb on + strand, within CCNA_01399at 1519.638 kb on - strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.654 kb on + strand, within CCNA_01399at 1519.662 kb on - strand, within CCNA_01399at 1519.662 kb on - strand, within CCNA_01399at 1519.690 kb on - strand, within CCNA_01399at 1519.759 kb on - strand, within CCNA_01399at 1519.792 kb on + strand, within CCNA_01399at 1519.800 kb on - strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strandat 1519.802 kb on + strand, within CCNA_01399at 1519.802 kb on + strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.810 kb on - strand, within CCNA_01399at 1519.812 kb on + strand, within CCNA_01399at 1519.827 kb on + strand, within CCNA_01399at 1519.828 kb on + strand, within CCNA_01399at 1519.834 kb on - strand, within CCNA_01399at 1519.843 kb on + strand, within CCNA_01399at 1520.000 kb on + strandat 1520.020 kb on + strandat 1520.184 kb on - strand, within CCNA_01400at 1520.196 kb on + strand, within CCNA_01400at 1520.245 kb on + strand, within CCNA_01400at 1520.266 kb on + strand, within CCNA_01400at 1520.290 kb on + strand, within CCNA_01400at 1520.298 kb on - strand, within CCNA_01400at 1520.366 kb on + strand, within CCNA_01400at 1520.375 kb on - strand, within CCNA_01400at 1520.391 kb on + strand, within CCNA_01400at 1520.433 kb on - strandat 1520.433 kb on - strandat 1520.456 kb on + strandat 1520.482 kb on + strandat 1520.482 kb on + strandat 1520.629 kb on - strandat 1520.743 kb on - strandat 1520.744 kb on - strandat 1520.782 kb on - strandat 1520.782 kb on - strandat 1520.793 kb on + strandat 1520.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,519,123 + CCNA_01399 0.37 +0.6
1,519,182 + CCNA_01399 0.41 +1.4
1,519,201 + CCNA_01399 0.42 +0.6
1,519,204 - CCNA_01399 0.42 +0.4
1,519,206 + CCNA_01399 0.42 +0.2
1,519,209 - CCNA_01399 0.43 -1.9
1,519,214 - CCNA_01399 0.43 +2.4
1,519,219 - CCNA_01399 0.43 -0.2
1,519,222 + CCNA_01399 0.43 -1.4
1,519,229 - CCNA_01399 0.44 -1.3
1,519,229 - CCNA_01399 0.44 +2.1
1,519,235 - CCNA_01399 0.44 -0.7
1,519,244 - CCNA_01399 0.45 -1.1
1,519,246 + CCNA_01399 0.45 +1.2
1,519,265 + CCNA_01399 0.46 -0.8
1,519,310 - CCNA_01399 0.49 -2.0
1,519,313 + CCNA_01399 0.49 -0.7
1,519,313 + +1.4
1,519,321 + CCNA_01399 0.50 +0.5
1,519,323 + CCNA_01399 0.50 -0.9
1,519,326 + CCNA_01399 0.50 -0.3
1,519,329 - CCNA_01399 0.50 +0.0
1,519,361 + CCNA_01399 0.53 +0.4
1,519,361 + CCNA_01399 0.53 -1.5
1,519,366 + CCNA_01399 0.53 -0.5
1,519,369 - CCNA_01399 0.53 -2.4
1,519,369 - CCNA_01399 0.53 -2.1
1,519,379 - CCNA_01399 0.54 +0.2
1,519,434 - CCNA_01399 0.57 -1.2
1,519,434 - CCNA_01399 0.57 +1.0
1,519,589 - CCNA_01399 0.67 -0.0
1,519,609 + CCNA_01399 0.69 +0.8
1,519,638 - CCNA_01399 0.71 +0.4
1,519,654 + CCNA_01399 0.72 +0.7
1,519,654 + CCNA_01399 0.72 -0.0
1,519,654 + CCNA_01399 0.72 -1.3
1,519,662 - CCNA_01399 0.72 -0.3
1,519,662 - CCNA_01399 0.72 +2.7
1,519,690 - CCNA_01399 0.74 -1.1
1,519,759 - CCNA_01399 0.78 +0.8
1,519,792 + CCNA_01399 0.81 -0.3
1,519,800 - CCNA_01399 0.81 -2.0
1,519,802 + CCNA_01399 0.81 +0.6
1,519,802 + CCNA_01399 0.81 -1.6
1,519,802 + CCNA_01399 0.81 +0.7
1,519,802 + CCNA_01399 0.81 -1.0
1,519,802 + +0.8
1,519,802 + CCNA_01399 0.81 -0.4
1,519,802 + CCNA_01399 0.81 +0.8
1,519,810 - CCNA_01399 0.82 +1.4
1,519,810 - CCNA_01399 0.82 +0.8
1,519,810 - CCNA_01399 0.82 +0.3
1,519,810 - CCNA_01399 0.82 +0.2
1,519,810 - CCNA_01399 0.82 +0.2
1,519,810 - CCNA_01399 0.82 -2.6
1,519,810 - CCNA_01399 0.82 +1.3
1,519,810 - CCNA_01399 0.82 -0.4
1,519,810 - CCNA_01399 0.82 -2.0
1,519,810 - CCNA_01399 0.82 -1.3
1,519,810 - CCNA_01399 0.82 -1.4
1,519,810 - CCNA_01399 0.82 -0.4
1,519,810 - CCNA_01399 0.82 -0.3
1,519,812 + CCNA_01399 0.82 -2.0
1,519,827 + CCNA_01399 0.83 +0.1
1,519,828 + CCNA_01399 0.83 +0.2
1,519,834 - CCNA_01399 0.83 -0.8
1,519,843 + CCNA_01399 0.84 -1.1
1,520,000 + -0.8
1,520,020 + +0.4
1,520,184 - CCNA_01400 0.20 -0.0
1,520,196 + CCNA_01400 0.24 -0.8
1,520,245 + CCNA_01400 0.38 -1.1
1,520,266 + CCNA_01400 0.45 -0.3
1,520,290 + CCNA_01400 0.52 -1.0
1,520,298 - CCNA_01400 0.54 -1.0
1,520,366 + CCNA_01400 0.74 -2.3
1,520,375 - CCNA_01400 0.77 +0.4
1,520,391 + CCNA_01400 0.81 -0.2
1,520,433 - +0.6
1,520,433 - -1.3
1,520,456 + -0.2
1,520,482 + +0.4
1,520,482 + +1.2
1,520,629 - +1.2
1,520,743 - -0.4
1,520,744 - -1.1
1,520,782 - +0.7
1,520,782 - +0.1
1,520,793 + +1.2
1,520,814 + +0.4

Or see this region's nucleotide sequence