Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01399 and CCNA_01400 are separated by 26 nucleotides CCNA_01400 and CCNA_01403 are separated by 480 nucleotides
CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088
_01399
CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453
_01400
CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833
_01403
Position (kb)
1520
1521 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1519.123 kb on + strand, within CCNA_01399 at 1519.182 kb on + strand, within CCNA_01399 at 1519.201 kb on + strand, within CCNA_01399 at 1519.204 kb on - strand, within CCNA_01399 at 1519.206 kb on + strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.214 kb on - strand, within CCNA_01399 at 1519.219 kb on - strand, within CCNA_01399 at 1519.222 kb on + strand, within CCNA_01399 at 1519.229 kb on - strand, within CCNA_01399 at 1519.229 kb on - strand, within CCNA_01399 at 1519.235 kb on - strand, within CCNA_01399 at 1519.244 kb on - strand, within CCNA_01399 at 1519.246 kb on + strand, within CCNA_01399 at 1519.265 kb on + strand, within CCNA_01399 at 1519.310 kb on - strand, within CCNA_01399 at 1519.313 kb on + strand, within CCNA_01399 at 1519.313 kb on + strand at 1519.321 kb on + strand, within CCNA_01399 at 1519.323 kb on + strand, within CCNA_01399 at 1519.326 kb on + strand, within CCNA_01399 at 1519.329 kb on - strand, within CCNA_01399 at 1519.361 kb on + strand, within CCNA_01399 at 1519.361 kb on + strand, within CCNA_01399 at 1519.366 kb on + strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.379 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.589 kb on - strand, within CCNA_01399 at 1519.609 kb on + strand, within CCNA_01399 at 1519.638 kb on - strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.690 kb on - strand, within CCNA_01399 at 1519.759 kb on - strand, within CCNA_01399 at 1519.792 kb on + strand, within CCNA_01399 at 1519.800 kb on - strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.812 kb on + strand, within CCNA_01399 at 1519.827 kb on + strand, within CCNA_01399 at 1519.828 kb on + strand, within CCNA_01399 at 1519.834 kb on - strand, within CCNA_01399 at 1519.843 kb on + strand, within CCNA_01399 at 1520.000 kb on + strand at 1520.020 kb on + strand at 1520.184 kb on - strand, within CCNA_01400 at 1520.196 kb on + strand, within CCNA_01400 at 1520.245 kb on + strand, within CCNA_01400 at 1520.266 kb on + strand, within CCNA_01400 at 1520.290 kb on + strand, within CCNA_01400 at 1520.298 kb on - strand, within CCNA_01400 at 1520.366 kb on + strand, within CCNA_01400 at 1520.375 kb on - strand, within CCNA_01400 at 1520.391 kb on + strand, within CCNA_01400 at 1520.433 kb on - strand at 1520.433 kb on - strand at 1520.456 kb on + strand at 1520.482 kb on + strand at 1520.482 kb on + strand at 1520.629 kb on - strand at 1520.743 kb on - strand at 1520.744 kb on - strand at 1520.782 kb on - strand at 1520.782 kb on - strand at 1520.793 kb on + strand at 1520.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,519,123 + CCNA_01399 0.37 +0.6 1,519,182 + CCNA_01399 0.41 +1.4 1,519,201 + CCNA_01399 0.42 +0.6 1,519,204 - CCNA_01399 0.42 +0.4 1,519,206 + CCNA_01399 0.42 +0.2 1,519,209 - CCNA_01399 0.43 -1.9 1,519,214 - CCNA_01399 0.43 +2.4 1,519,219 - CCNA_01399 0.43 -0.2 1,519,222 + CCNA_01399 0.43 -1.4 1,519,229 - CCNA_01399 0.44 -1.3 1,519,229 - CCNA_01399 0.44 +2.1 1,519,235 - CCNA_01399 0.44 -0.7 1,519,244 - CCNA_01399 0.45 -1.1 1,519,246 + CCNA_01399 0.45 +1.2 1,519,265 + CCNA_01399 0.46 -0.8 1,519,310 - CCNA_01399 0.49 -2.0 1,519,313 + CCNA_01399 0.49 -0.7 1,519,313 + +1.4 1,519,321 + CCNA_01399 0.50 +0.5 1,519,323 + CCNA_01399 0.50 -0.9 1,519,326 + CCNA_01399 0.50 -0.3 1,519,329 - CCNA_01399 0.50 +0.0 1,519,361 + CCNA_01399 0.53 +0.4 1,519,361 + CCNA_01399 0.53 -1.5 1,519,366 + CCNA_01399 0.53 -0.5 1,519,369 - CCNA_01399 0.53 -2.4 1,519,369 - CCNA_01399 0.53 -2.1 1,519,379 - CCNA_01399 0.54 +0.2 1,519,434 - CCNA_01399 0.57 -1.2 1,519,434 - CCNA_01399 0.57 +1.0 1,519,589 - CCNA_01399 0.67 -0.0 1,519,609 + CCNA_01399 0.69 +0.8 1,519,638 - CCNA_01399 0.71 +0.4 1,519,654 + CCNA_01399 0.72 +0.7 1,519,654 + CCNA_01399 0.72 -0.0 1,519,654 + CCNA_01399 0.72 -1.3 1,519,662 - CCNA_01399 0.72 -0.3 1,519,662 - CCNA_01399 0.72 +2.7 1,519,690 - CCNA_01399 0.74 -1.1 1,519,759 - CCNA_01399 0.78 +0.8 1,519,792 + CCNA_01399 0.81 -0.3 1,519,800 - CCNA_01399 0.81 -2.0 1,519,802 + CCNA_01399 0.81 +0.6 1,519,802 + CCNA_01399 0.81 -1.6 1,519,802 + CCNA_01399 0.81 +0.7 1,519,802 + CCNA_01399 0.81 -1.0 1,519,802 + +0.8 1,519,802 + CCNA_01399 0.81 -0.4 1,519,802 + CCNA_01399 0.81 +0.8 1,519,810 - CCNA_01399 0.82 +1.4 1,519,810 - CCNA_01399 0.82 +0.8 1,519,810 - CCNA_01399 0.82 +0.3 1,519,810 - CCNA_01399 0.82 +0.2 1,519,810 - CCNA_01399 0.82 +0.2 1,519,810 - CCNA_01399 0.82 -2.6 1,519,810 - CCNA_01399 0.82 +1.3 1,519,810 - CCNA_01399 0.82 -0.4 1,519,810 - CCNA_01399 0.82 -2.0 1,519,810 - CCNA_01399 0.82 -1.3 1,519,810 - CCNA_01399 0.82 -1.4 1,519,810 - CCNA_01399 0.82 -0.4 1,519,810 - CCNA_01399 0.82 -0.3 1,519,812 + CCNA_01399 0.82 -2.0 1,519,827 + CCNA_01399 0.83 +0.1 1,519,828 + CCNA_01399 0.83 +0.2 1,519,834 - CCNA_01399 0.83 -0.8 1,519,843 + CCNA_01399 0.84 -1.1 1,520,000 + -0.8 1,520,020 + +0.4 1,520,184 - CCNA_01400 0.20 -0.0 1,520,196 + CCNA_01400 0.24 -0.8 1,520,245 + CCNA_01400 0.38 -1.1 1,520,266 + CCNA_01400 0.45 -0.3 1,520,290 + CCNA_01400 0.52 -1.0 1,520,298 - CCNA_01400 0.54 -1.0 1,520,366 + CCNA_01400 0.74 -2.3 1,520,375 - CCNA_01400 0.77 +0.4 1,520,391 + CCNA_01400 0.81 -0.2 1,520,433 - +0.6 1,520,433 - -1.3 1,520,456 + -0.2 1,520,482 + +0.4 1,520,482 + +1.2 1,520,629 - +1.2 1,520,743 - -0.4 1,520,744 - -1.1 1,520,782 - +0.7 1,520,782 - +0.1 1,520,793 + +1.2 1,520,814 + +0.4
Or see this region's nucleotide sequence