Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00882 and CCNA_00883 are separated by 191 nucleotides CCNA_00883 and CCNA_00884 are separated by 2 nucleotides CCNA_00884 and CCNA_00885 overlap by 11 nucleotides CCNA_00885 and CCNA_00886 are separated by 206 nucleotides
CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853
_00882
CCNA_00883: CCNA_00883 - 3-demethylubiquinone 3-methyltransferase, at 963,045 to 963,803
_00883
CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192
_00884
CCNA_00885: CCNA_00885 - MazE-like antitoxin protein, at 964,182 to 964,730
_00885
CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184
_00886
Position (kb)
963
964
965 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.817 kb on - strand at 962.817 kb on - strand at 962.819 kb on + strand at 962.822 kb on - strand at 962.850 kb on + strand at 962.850 kb on + strand at 962.858 kb on - strand at 962.863 kb on - strand at 962.865 kb on + strand at 962.873 kb on - strand at 962.947 kb on + strand at 962.949 kb on - strand at 962.957 kb on + strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.977 kb on - strand at 962.989 kb on - strand at 962.991 kb on + strand at 962.999 kb on - strand at 963.041 kb on - strand at 963.041 kb on - strand at 963.046 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.760 kb on + strand at 963.769 kb on + strand at 963.799 kb on + strand at 963.807 kb on - strand at 963.831 kb on + strand at 963.834 kb on - strand at 963.836 kb on + strand at 963.836 kb on + strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.863 kb on + strand, within CCNA_00884 at 963.904 kb on - strand, within CCNA_00884 at 963.925 kb on + strand, within CCNA_00884 at 963.942 kb on + strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.973 kb on + strand, within CCNA_00884 at 964.042 kb on + strand, within CCNA_00884 at 964.076 kb on - strand, within CCNA_00884 at 964.091 kb on + strand, within CCNA_00884 at 964.099 kb on - strand, within CCNA_00884 at 964.201 kb on - strand at 964.207 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.227 kb on + strand at 964.234 kb on + strand at 964.306 kb on - strand, within CCNA_00885 at 964.327 kb on + strand, within CCNA_00885 at 964.329 kb on - strand, within CCNA_00885 at 964.354 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.378 kb on + strand, within CCNA_00885 at 964.379 kb on - strand, within CCNA_00885 at 964.395 kb on + strand, within CCNA_00885 at 964.398 kb on - strand, within CCNA_00885 at 964.403 kb on - strand, within CCNA_00885 at 964.416 kb on + strand, within CCNA_00885 at 964.423 kb on + strand, within CCNA_00885 at 964.425 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.443 kb on - strand, within CCNA_00885 at 964.448 kb on - strand, within CCNA_00885 at 964.461 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.483 kb on - strand, within CCNA_00885 at 964.485 kb on - strand, within CCNA_00885 at 964.525 kb on + strand, within CCNA_00885 at 964.531 kb on + strand, within CCNA_00885 at 964.533 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.561 kb on - strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.585 kb on - strand, within CCNA_00885 at 964.595 kb on - strand, within CCNA_00885 at 964.605 kb on - strand, within CCNA_00885 at 964.669 kb on - strand, within CCNA_00885 at 964.708 kb on - strand at 964.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 962,809 + -0.4 962,809 + +0.2 962,809 + -0.9 962,809 + -0.3 962,809 + -0.9 962,817 - -2.0 962,817 - -0.3 962,819 + +1.5 962,822 - +1.9 962,850 + +2.9 962,850 + -0.0 962,858 - -1.6 962,863 - -2.4 962,865 + -0.9 962,873 - +1.1 962,947 + -1.3 962,949 - -0.3 962,957 + +1.2 962,965 - +0.7 962,965 - +0.8 962,965 - -1.4 962,965 - +0.1 962,965 - -0.1 962,965 - +0.1 962,977 - +0.8 962,989 - +0.1 962,991 + +1.0 962,999 - -0.4 963,041 - -0.2 963,041 - -0.2 963,046 - -0.2 963,051 - -0.5 963,051 - +1.1 963,051 - -0.8 963,760 + +0.7 963,769 + -2.4 963,799 + +1.3 963,807 - -2.5 963,831 + +0.5 963,834 - -0.2 963,836 + +0.1 963,836 + +0.6 963,844 - -0.1 963,844 - -0.6 963,844 - -1.2 963,844 - -1.4 963,863 + CCNA_00884 0.15 -1.7 963,904 - CCNA_00884 0.25 -0.2 963,925 + CCNA_00884 0.31 -0.8 963,942 + CCNA_00884 0.35 -1.2 963,950 - CCNA_00884 0.37 +0.3 963,950 - CCNA_00884 0.37 -0.7 963,950 - CCNA_00884 0.37 +1.3 963,973 + CCNA_00884 0.43 -2.6 964,042 + CCNA_00884 0.61 +1.2 964,076 - CCNA_00884 0.70 -1.3 964,091 + CCNA_00884 0.74 -1.2 964,099 - CCNA_00884 0.76 -0.7 964,201 - +0.5 964,207 - -1.1 964,220 - +0.6 964,220 - -0.6 964,220 - +0.7 964,227 + -0.9 964,234 + -1.2 964,306 - CCNA_00885 0.23 -0.5 964,327 + CCNA_00885 0.26 +0.1 964,329 - CCNA_00885 0.27 -0.1 964,354 + CCNA_00885 0.31 +0.2 964,359 + CCNA_00885 0.32 +0.9 964,359 + CCNA_00885 0.32 +4.1 964,359 + CCNA_00885 0.32 -2.7 964,378 + CCNA_00885 0.36 -0.9 964,379 - CCNA_00885 0.36 +0.0 964,395 + CCNA_00885 0.39 -1.6 964,398 - CCNA_00885 0.39 +2.0 964,403 - CCNA_00885 0.40 +0.4 964,416 + CCNA_00885 0.43 +1.2 964,423 + CCNA_00885 0.44 -0.6 964,425 - CCNA_00885 0.44 +0.7 964,431 - CCNA_00885 0.45 +0.9 964,431 - CCNA_00885 0.45 +0.4 964,431 - CCNA_00885 0.45 +1.1 964,440 + CCNA_00885 0.47 +1.9 964,440 + CCNA_00885 0.47 -1.2 964,440 + CCNA_00885 0.47 -0.2 964,443 - CCNA_00885 0.48 -1.2 964,448 - CCNA_00885 0.48 +1.3 964,461 + CCNA_00885 0.51 -1.1 964,475 + CCNA_00885 0.53 +0.7 964,475 + CCNA_00885 0.53 -1.7 964,483 - CCNA_00885 0.55 +0.4 964,485 - CCNA_00885 0.55 +0.6 964,525 + CCNA_00885 0.62 -0.1 964,531 + CCNA_00885 0.64 -0.4 964,533 - CCNA_00885 0.64 -0.3 964,554 - CCNA_00885 0.68 +1.4 964,554 - CCNA_00885 0.68 +0.5 964,561 - CCNA_00885 0.69 +0.2 964,577 + CCNA_00885 0.72 +0.9 964,577 + CCNA_00885 0.72 +0.7 964,577 + CCNA_00885 0.72 +1.3 964,585 - CCNA_00885 0.73 -0.0 964,595 - CCNA_00885 0.75 +0.8 964,605 - CCNA_00885 0.77 +0.2 964,669 - CCNA_00885 0.89 -0.5 964,708 - +0.9 964,794 - -1.2
Or see this region's nucleotide sequence