Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00874 and CCNA_00875 are separated by 6 nucleotides CCNA_00875 and CCNA_00876 overlap by 22 nucleotides CCNA_00876 and CCNA_00877 are separated by 31 nucleotides CCNA_00877 and CCNA_00878 are separated by 272 nucleotides
CCNA_00874: CCNA_00874 - biotin synthesis protein bioC, at 952,833 to 953,744
_00874
CCNA_00875: CCNA_00875 - Flp/Fap pilin component protein, at 953,751 to 953,924
_00875
CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307
_00876
CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947
_00877
CCNA_00878: CCNA_00878 - ATP-dependent RNA helicase, at 955,220 to 956,650
_00878
Position (kb) 954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 953.632 kb on + strand, within CCNA_00874 at 953.687 kb on - strand at 953.687 kb on - strand at 953.707 kb on + strand at 953.747 kb on + strand at 953.823 kb on + strand, within CCNA_00875 at 953.823 kb on + strand, within CCNA_00875 at 953.831 kb on - strand, within CCNA_00875 at 953.831 kb on - strand, within CCNA_00875 at 953.833 kb on + strand, within CCNA_00875 at 953.833 kb on + strand, within CCNA_00875 at 953.838 kb on + strand, within CCNA_00875 at 953.838 kb on + strand, within CCNA_00875 at 953.841 kb on - strand, within CCNA_00875 at 953.841 kb on - strand, within CCNA_00875 at 953.846 kb on - strand, within CCNA_00875 at 953.875 kb on + strand, within CCNA_00875 at 953.904 kb on - strand at 953.966 kb on - strand, within CCNA_00876 at 953.984 kb on - strand, within CCNA_00876 at 954.021 kb on - strand, within CCNA_00876 at 954.097 kb on + strand, within CCNA_00876 at 954.102 kb on + strand, within CCNA_00876 at 954.105 kb on - strand, within CCNA_00876 at 954.206 kb on - strand, within CCNA_00876 at 954.242 kb on + strand, within CCNA_00876 at 954.266 kb on + strand, within CCNA_00876 at 954.279 kb on - strand at 954.302 kb on + strand at 954.304 kb on - strand at 954.304 kb on - strand at 954.335 kb on - strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.362 kb on + strand at 954.365 kb on - strand at 954.367 kb on + strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.447 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.497 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.588 kb on - strand, within CCNA_00877 at 954.594 kb on - strand, within CCNA_00877 at 954.609 kb on - strand, within CCNA_00877 at 954.663 kb on - strand, within CCNA_00877 at 954.690 kb on - strand, within CCNA_00877 at 954.695 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.705 kb on - strand, within CCNA_00877 at 954.707 kb on + strand, within CCNA_00877 at 954.708 kb on - strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.723 kb on - strand, within CCNA_00877 at 954.736 kb on + strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.798 kb on + strand, within CCNA_00877 at 954.809 kb on + strand at 954.817 kb on - strand, within CCNA_00877 at 954.862 kb on + strand, within CCNA_00877 at 954.867 kb on + strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.893 kb on + strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.906 kb on - strand at 954.911 kb on + strand at 954.919 kb on - strand at 954.919 kb on - strand at 954.942 kb on + strand at 954.950 kb on - strand at 954.950 kb on - strand at 954.950 kb on - strand at 954.965 kb on - strand at 955.069 kb on - strand at 955.084 kb on + strand at 955.097 kb on - strand at 955.190 kb on + strand at 955.198 kb on - strand at 955.207 kb on + strand at 955.212 kb on + strand at 955.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 953,632 + CCNA_00874 0.88 +1.7 953,687 - -0.0 953,687 - +1.0 953,707 + +0.9 953,747 + -1.3 953,823 + CCNA_00875 0.41 -1.0 953,823 + CCNA_00875 0.41 -0.2 953,831 - CCNA_00875 0.46 -0.9 953,831 - CCNA_00875 0.46 -0.5 953,833 + CCNA_00875 0.47 +0.3 953,833 + CCNA_00875 0.47 -0.1 953,838 + CCNA_00875 0.50 -0.5 953,838 + CCNA_00875 0.50 -1.3 953,841 - CCNA_00875 0.52 +0.2 953,841 - CCNA_00875 0.52 -0.6 953,846 - CCNA_00875 0.55 +1.9 953,875 + CCNA_00875 0.71 +0.4 953,904 - +0.5 953,966 - CCNA_00876 0.16 +0.9 953,984 - CCNA_00876 0.20 +0.3 954,021 - CCNA_00876 0.29 +0.5 954,097 + CCNA_00876 0.48 +0.7 954,102 + CCNA_00876 0.49 +3.5 954,105 - CCNA_00876 0.50 -1.9 954,206 - CCNA_00876 0.75 -1.3 954,242 + CCNA_00876 0.84 -1.4 954,266 + CCNA_00876 0.90 -1.0 954,279 - +0.7 954,302 + -0.2 954,304 - -0.2 954,304 - -1.0 954,335 - -0.4 954,337 + +2.1 954,337 + +0.4 954,337 + -0.2 954,337 + +0.0 954,337 + +0.5 954,337 + -0.6 954,337 + -0.4 954,337 + +0.7 954,345 - +1.8 954,345 - -1.5 954,345 - +0.4 954,345 - -1.8 954,345 - -0.5 954,345 - +2.9 954,345 - +0.7 954,362 + +1.5 954,365 - -0.7 954,367 + +0.1 954,370 - +0.0 954,370 - -0.7 954,370 - +0.1 954,370 - -0.2 954,370 - +0.2 954,447 - CCNA_00877 0.18 -2.4 954,447 - CCNA_00877 0.18 -1.8 954,497 + CCNA_00877 0.26 -1.2 954,580 + CCNA_00877 0.40 +0.5 954,580 + CCNA_00877 0.40 +0.3 954,580 + CCNA_00877 0.40 -0.7 954,588 - CCNA_00877 0.41 -1.2 954,594 - CCNA_00877 0.42 -1.2 954,609 - CCNA_00877 0.44 -0.9 954,663 - CCNA_00877 0.53 -1.1 954,690 - CCNA_00877 0.58 -1.4 954,695 - CCNA_00877 0.58 +0.5 954,698 - CCNA_00877 0.59 -0.5 954,698 - CCNA_00877 0.59 -2.0 954,698 - CCNA_00877 0.59 +1.5 954,705 - CCNA_00877 0.60 -1.4 954,707 + CCNA_00877 0.60 +0.5 954,708 - CCNA_00877 0.61 +0.9 954,715 + CCNA_00877 0.62 +0.4 954,715 + CCNA_00877 0.62 -1.6 954,715 + CCNA_00877 0.62 -1.0 954,715 + CCNA_00877 0.62 -1.4 954,723 - CCNA_00877 0.63 -0.9 954,736 + CCNA_00877 0.65 -2.0 954,744 - CCNA_00877 0.67 -0.3 954,744 - CCNA_00877 0.67 +0.5 954,798 + CCNA_00877 0.75 +0.2 954,809 + +1.5 954,817 - CCNA_00877 0.78 -0.3 954,862 + CCNA_00877 0.86 +0.4 954,867 + CCNA_00877 0.87 -3.2 954,870 - CCNA_00877 0.87 -1.2 954,870 - CCNA_00877 0.87 +0.2 954,870 - CCNA_00877 0.87 -0.2 954,893 + -0.0 954,901 - -1.2 954,901 - +1.6 954,901 - -1.3 954,906 - +0.5 954,911 + +0.5 954,919 - -1.2 954,919 - +2.9 954,942 + -0.1 954,950 - -0.2 954,950 - -1.2 954,950 - -0.3 954,965 - -0.8 955,069 - -0.1 955,084 + -1.3 955,097 - +0.6 955,190 + +0.4 955,198 - +0.7 955,207 + -1.1 955,212 + +0.7 955,356 + -0.5
Or see this region's nucleotide sequence