Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00803 and CCNA_00804 are separated by 64 nucleotides CCNA_00804 and CCNA_00805 are separated by 229 nucleotides CCNA_00805 and CCNA_00806 overlap by 1 nucleotides
CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309
_00803
CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859
_00804
CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778
_00805
CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625
_00806
Position (kb)
869
870 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 868.100 kb on + strand, within CCNA_00803 at 868.143 kb on - strand, within CCNA_00803 at 868.163 kb on - strand at 868.176 kb on + strand, within CCNA_00803 at 868.188 kb on + strand, within CCNA_00803 at 868.226 kb on - strand, within CCNA_00803 at 868.269 kb on + strand at 868.286 kb on + strand at 868.371 kb on + strand at 868.414 kb on - strand at 868.416 kb on + strand at 868.514 kb on - strand, within CCNA_00804 at 868.566 kb on - strand, within CCNA_00804 at 868.613 kb on - strand, within CCNA_00804 at 868.639 kb on - strand, within CCNA_00804 at 868.646 kb on - strand, within CCNA_00804 at 868.653 kb on + strand, within CCNA_00804 at 868.653 kb on + strand, within CCNA_00804 at 868.667 kb on - strand, within CCNA_00804 at 868.701 kb on - strand, within CCNA_00804 at 868.708 kb on + strand, within CCNA_00804 at 868.716 kb on - strand, within CCNA_00804 at 868.716 kb on - strand, within CCNA_00804 at 868.742 kb on + strand, within CCNA_00804 at 868.742 kb on + strand, within CCNA_00804 at 868.744 kb on + strand, within CCNA_00804 at 868.750 kb on - strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.805 kb on - strand, within CCNA_00804 at 868.836 kb on + strand at 868.847 kb on - strand at 868.900 kb on + strand at 868.917 kb on - strand at 868.987 kb on + strand at 868.990 kb on - strand at 868.992 kb on + strand at 868.995 kb on + strand at 869.004 kb on - strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.107 kb on - strand at 869.696 kb on + strand, within CCNA_00805 at 869.704 kb on - strand, within CCNA_00805 at 869.758 kb on - strand at 869.830 kb on - strand at 869.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 868,100 + CCNA_00803 0.54 +1.7 868,143 - CCNA_00803 0.63 +2.0 868,163 - +2.6 868,176 + CCNA_00803 0.71 -0.4 868,188 + CCNA_00803 0.73 +1.4 868,226 - CCNA_00803 0.82 +0.8 868,269 + -0.7 868,286 + +0.2 868,371 + -1.4 868,414 - -0.3 868,416 + +0.7 868,514 - CCNA_00804 0.29 +0.2 868,566 - CCNA_00804 0.40 -0.2 868,613 - CCNA_00804 0.49 +0.4 868,639 - CCNA_00804 0.55 -0.1 868,646 - CCNA_00804 0.56 +0.6 868,653 + CCNA_00804 0.57 -0.8 868,653 + CCNA_00804 0.57 +0.6 868,667 - CCNA_00804 0.60 +1.0 868,701 - CCNA_00804 0.67 -0.4 868,708 + CCNA_00804 0.69 +1.0 868,716 - CCNA_00804 0.70 -2.5 868,716 - CCNA_00804 0.70 +0.6 868,742 + CCNA_00804 0.76 -0.4 868,742 + CCNA_00804 0.76 -1.1 868,744 + CCNA_00804 0.76 +0.8 868,750 - CCNA_00804 0.77 -1.6 868,797 + CCNA_00804 0.87 -0.6 868,797 + CCNA_00804 0.87 +0.2 868,797 + CCNA_00804 0.87 +0.3 868,805 - CCNA_00804 0.89 +0.2 868,836 + -0.3 868,847 - -0.1 868,900 + +0.7 868,917 - +0.5 868,987 + -0.4 868,990 - +2.1 868,992 + -1.1 868,995 + -0.4 869,004 - +0.7 869,009 + -1.5 869,009 + +0.7 869,009 + +1.7 869,009 + +1.5 869,009 + -0.4 869,009 + +0.5 869,009 + +0.6 869,017 - +1.2 869,017 - -1.1 869,017 - +1.4 869,017 - -0.2 869,107 - +0.7 869,696 + CCNA_00805 0.88 -1.0 869,704 - CCNA_00805 0.89 -0.6 869,758 - -0.3 869,830 - +0.8 869,847 - +0.1
Or see this region's nucleotide sequence