Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00801

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00800 and CCNA_00801 are separated by 14 nucleotidesCCNA_00801 and CCNA_00802 are separated by 18 nucleotidesCCNA_00802 and CCNA_00803 are separated by 158 nucleotidesCCNA_00803 and CCNA_00804 are separated by 64 nucleotides CCNA_00800: CCNA_00800 - cytochrome bd-type quinol oxidase, subunit 1 cydA, at 864,829 to 866,391 _00800 CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695 _00802 CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 865.426 kb on + strand, within CCNA_00800at 865.520 kb on + strand, within CCNA_00800at 865.532 kb on + strand, within CCNA_00800at 865.537 kb on + strand, within CCNA_00800at 865.545 kb on - strand, within CCNA_00800at 865.559 kb on - strand, within CCNA_00800at 865.564 kb on - strand, within CCNA_00800at 865.595 kb on + strand, within CCNA_00800at 865.614 kb on + strand, within CCNA_00800at 865.668 kb on + strand, within CCNA_00800at 865.702 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.859 kb on + strand, within CCNA_00800at 865.867 kb on - strand, within CCNA_00800at 865.892 kb on - strand, within CCNA_00800at 865.894 kb on - strand, within CCNA_00800at 865.929 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.989 kb on + strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 866.044 kb on + strand, within CCNA_00800at 866.090 kb on - strand, within CCNA_00800at 866.119 kb on + strand, within CCNA_00800at 866.124 kb on + strand, within CCNA_00800at 866.183 kb on - strand, within CCNA_00800at 866.193 kb on - strand, within CCNA_00800at 866.265 kb on - strandat 866.266 kb on + strandat 866.268 kb on + strandat 866.283 kb on + strandat 866.291 kb on - strandat 866.308 kb on - strandat 866.337 kb on - strandat 866.343 kb on - strandat 866.352 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.446 kb on + strandat 866.484 kb on - strandat 866.517 kb on + strandat 866.525 kb on - strand, within CCNA_00801at 866.540 kb on - strand, within CCNA_00801at 866.592 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.610 kb on - strand, within CCNA_00801at 866.634 kb on + strand, within CCNA_00801at 866.645 kb on + strand, within CCNA_00801at 866.653 kb on - strand, within CCNA_00801at 866.755 kb on - strand, within CCNA_00801at 866.818 kb on + strand, within CCNA_00801at 866.818 kb on + strandat 866.818 kb on - strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.828 kb on + strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.835 kb on + strand, within CCNA_00801at 866.880 kb on + strand, within CCNA_00801at 866.909 kb on - strand, within CCNA_00801at 866.927 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.987 kb on + strand, within CCNA_00801at 866.993 kb on + strand, within CCNA_00801at 866.995 kb on - strand, within CCNA_00801at 867.039 kb on + strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.057 kb on - strand, within CCNA_00801at 867.081 kb on - strand, within CCNA_00801at 867.119 kb on + strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.228 kb on + strand, within CCNA_00801at 867.236 kb on - strand, within CCNA_00801at 867.257 kb on - strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.267 kb on - strand, within CCNA_00801at 867.334 kb on + strand, within CCNA_00801at 867.363 kb on + strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.399 kb on + strand, within CCNA_00801at 867.399 kb on - strand, within CCNA_00801at 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.484 kb on - strandat 867.499 kb on - strandat 867.512 kb on + strandat 867.531 kb on - strandat 867.531 kb on - strandat 867.541 kb on + strandat 867.542 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.551 kb on + strandat 867.551 kb on + strandat 867.559 kb on - strandat 867.565 kb on - strandat 867.576 kb on + strandat 867.609 kb on - strand, within CCNA_00802at 867.629 kb on + strand, within CCNA_00802at 867.637 kb on - strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.657 kb on - strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.686 kb on - strandat 867.686 kb on - strandat 867.696 kb on + strandat 867.719 kb on - strandat 867.745 kb on + strandat 867.807 kb on - strandat 867.860 kb on + strandat 867.876 kb on - strandat 867.879 kb on + strandat 867.919 kb on - strand, within CCNA_00803at 867.924 kb on - strand, within CCNA_00803at 867.928 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.984 kb on + strand, within CCNA_00803at 868.012 kb on - strand, within CCNA_00803at 868.024 kb on + strand, within CCNA_00803at 868.071 kb on - strand, within CCNA_00803at 868.076 kb on + strand, within CCNA_00803at 868.084 kb on - strand, within CCNA_00803at 868.100 kb on + strand, within CCNA_00803at 868.143 kb on - strand, within CCNA_00803at 868.163 kb on - strandat 868.176 kb on + strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.226 kb on - strand, within CCNA_00803at 868.269 kb on + strandat 868.286 kb on + strandat 868.371 kb on + strandat 868.414 kb on - strandat 868.416 kb on + strandat 868.514 kb on - strand, within CCNA_00804

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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865,426 + CCNA_00800 0.38 -0.4
865,520 + CCNA_00800 0.44 -1.4
865,532 + CCNA_00800 0.45 +0.4
865,537 + CCNA_00800 0.45 -1.7
865,545 - CCNA_00800 0.46 -2.1
865,559 - CCNA_00800 0.47 -0.4
865,564 - CCNA_00800 0.47 -0.1
865,595 + CCNA_00800 0.49 -0.6
865,614 + CCNA_00800 0.50 +0.2
865,668 + CCNA_00800 0.54 -2.3
865,702 + CCNA_00800 0.56 -1.3
865,751 + CCNA_00800 0.59 +1.0
865,751 + CCNA_00800 0.59 +1.7
865,859 + CCNA_00800 0.66 +1.0
865,867 - CCNA_00800 0.66 -1.3
865,892 - CCNA_00800 0.68 +1.4
865,894 - CCNA_00800 0.68 -0.5
865,929 + CCNA_00800 0.70 -1.0
865,934 + CCNA_00800 0.71 -0.8
865,934 + CCNA_00800 0.71 +0.4
865,934 + CCNA_00800 0.71 -0.0
865,934 + CCNA_00800 0.71 -0.8
865,934 + CCNA_00800 0.71 -0.1
865,934 + CCNA_00800 0.71 -0.6
865,934 + CCNA_00800 0.71 -0.8
865,934 + CCNA_00800 0.71 -1.8
865,934 + CCNA_00800 0.71 -0.5
865,934 + CCNA_00800 0.71 +0.2
865,934 + CCNA_00800 0.71 -1.4
865,934 + CCNA_00800 0.71 -0.3
865,942 - CCNA_00800 0.71 -0.7
865,942 - CCNA_00800 0.71 +0.7
865,942 - CCNA_00800 0.71 -2.1
865,942 - CCNA_00800 0.71 -0.4
865,942 - CCNA_00800 0.71 -0.6
865,942 - CCNA_00800 0.71 +0.1
865,942 - CCNA_00800 0.71 -1.3
865,942 - CCNA_00800 0.71 -2.3
865,942 - CCNA_00800 0.71 -2.0
865,942 - CCNA_00800 0.71 -0.5
865,942 - CCNA_00800 0.71 -1.4
865,989 + CCNA_00800 0.74 -1.4
865,997 - CCNA_00800 0.75 -0.1
865,997 - CCNA_00800 0.75 -1.5
865,997 - CCNA_00800 0.75 -1.3
866,044 + CCNA_00800 0.78 +0.2
866,090 - CCNA_00800 0.81 +1.2
866,119 + CCNA_00800 0.83 -0.6
866,124 + CCNA_00800 0.83 -0.4
866,183 - CCNA_00800 0.87 -0.4
866,193 - CCNA_00800 0.87 +0.2
866,265 - -0.3
866,266 + +0.1
866,268 + +0.7
866,283 + -0.6
866,291 - +0.2
866,308 - -0.1
866,337 - -0.2
866,343 - -1.2
866,352 + +0.2
866,386 + +0.2
866,386 + -1.1
866,386 + +1.1
866,386 + +1.0
866,386 + -1.9
866,386 + +0.1
866,386 + -0.1
866,386 + -0.4
866,386 + -1.6
866,394 - +0.4
866,394 - +0.4
866,394 - -2.0
866,394 - +1.1
866,394 - -0.1
866,394 - +0.7
866,394 - +1.2
866,446 + +0.6
866,484 - -1.0
866,517 + -1.0
866,525 - CCNA_00801 0.10 -0.4
866,540 - CCNA_00801 0.12 -0.1
866,592 + CCNA_00801 0.16 -0.8
866,602 + CCNA_00801 0.17 +0.4
866,602 + CCNA_00801 0.17 +2.2
866,610 - CCNA_00801 0.18 +0.6
866,634 + CCNA_00801 0.20 -0.0
866,645 + CCNA_00801 0.21 -0.0
866,653 - CCNA_00801 0.21 -1.8
866,755 - CCNA_00801 0.30 -0.8
866,818 + CCNA_00801 0.36 -0.4
866,818 + +1.0
866,818 - CCNA_00801 0.36 -1.1
866,823 + CCNA_00801 0.36 -1.0
866,823 + CCNA_00801 0.36 +1.2
866,823 + CCNA_00801 0.36 -0.0
866,823 + CCNA_00801 0.36 -2.8
866,823 + CCNA_00801 0.36 -0.4
866,823 + CCNA_00801 0.36 -1.0
866,828 + CCNA_00801 0.37 +0.4
866,831 - CCNA_00801 0.37 -1.4
866,831 - CCNA_00801 0.37 -0.1
866,831 - CCNA_00801 0.37 -1.4
866,831 - CCNA_00801 0.37 -0.5
866,831 - CCNA_00801 0.37 -1.0
866,835 + CCNA_00801 0.37 -0.7
866,880 + CCNA_00801 0.41 -1.1
866,909 - CCNA_00801 0.44 +0.1
866,927 + CCNA_00801 0.45 +0.2
866,970 + CCNA_00801 0.49 -1.2
866,970 + CCNA_00801 0.49 +0.2
866,970 + CCNA_00801 0.49 -0.8
866,978 - CCNA_00801 0.50 -2.6
866,978 - CCNA_00801 0.50 +0.4
866,978 - CCNA_00801 0.50 -1.6
866,987 + CCNA_00801 0.50 +1.9
866,993 + CCNA_00801 0.51 -0.1
866,995 - CCNA_00801 0.51 -0.7
867,039 + CCNA_00801 0.55 -1.0
867,047 - CCNA_00801 0.56 +0.6
867,047 - CCNA_00801 0.56 -0.3
867,057 - CCNA_00801 0.57 +0.4
867,081 - CCNA_00801 0.59 -0.6
867,119 + CCNA_00801 0.62 -0.8
867,122 - CCNA_00801 0.62 -1.1
867,122 - CCNA_00801 0.62 -2.1
867,228 + CCNA_00801 0.71 -1.4
867,236 - CCNA_00801 0.72 -0.7
867,257 - CCNA_00801 0.74 -2.1
867,259 + CCNA_00801 0.74 -0.6
867,259 + CCNA_00801 0.74 -0.9
867,267 - CCNA_00801 0.75 -0.4
867,334 + CCNA_00801 0.81 +0.2
867,363 + CCNA_00801 0.83 -1.3
867,381 - CCNA_00801 0.85 -1.3
867,381 - CCNA_00801 0.85 -0.6
867,381 - CCNA_00801 0.85 -0.5
867,399 + CCNA_00801 0.86 -1.4
867,399 - CCNA_00801 0.86 -0.4
867,476 + -1.2
867,476 + -1.0
867,476 + -2.3
867,484 - -1.4
867,499 - -1.1
867,512 + +0.2
867,531 - -0.0
867,531 - -1.4
867,541 + +0.2
867,542 - -0.9
867,549 - -0.6
867,549 - -1.4
867,549 - +0.6
867,551 + +1.0
867,551 + +0.2
867,559 - -1.8
867,565 - -1.0
867,576 + +0.2
867,609 - CCNA_00802 0.28 -0.9
867,629 + CCNA_00802 0.44 -1.7
867,637 - CCNA_00802 0.51 -0.9
867,649 + CCNA_00802 0.61 -0.4
867,649 + CCNA_00802 0.61 +0.9
867,657 - CCNA_00802 0.68 -0.8
867,678 + CCNA_00802 0.85 -0.2
867,678 + CCNA_00802 0.85 -1.3
867,678 + CCNA_00802 0.85 +0.6
867,686 - -1.6
867,686 - +0.7
867,696 + +1.0
867,719 - -1.6
867,745 + -2.1
867,807 - -0.8
867,860 + +0.6
867,876 - +0.2
867,879 + +0.7
867,919 - CCNA_00803 0.14 -0.6
867,924 - CCNA_00803 0.15 -0.8
867,928 + CCNA_00803 0.16 +0.6
867,954 + CCNA_00803 0.22 +0.3
867,954 + CCNA_00803 0.22 +0.1
867,984 + CCNA_00803 0.29 +0.5
868,012 - CCNA_00803 0.35 -0.9
868,024 + CCNA_00803 0.37 +0.5
868,071 - CCNA_00803 0.48 +0.5
868,076 + CCNA_00803 0.49 +0.8
868,084 - CCNA_00803 0.50 -0.8
868,100 + CCNA_00803 0.54 +1.7
868,143 - CCNA_00803 0.63 +2.0
868,163 - +2.6
868,176 + CCNA_00803 0.71 -0.4
868,188 + CCNA_00803 0.73 +1.4
868,226 - CCNA_00803 0.82 +0.8
868,269 + -0.7
868,286 + +0.2
868,371 + -1.4
868,414 - -0.3
868,416 + +0.7
868,514 - CCNA_00804 0.29 +0.2

Or see this region's nucleotide sequence