Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00767

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00765 and CCNA_00766 are separated by 158 nucleotidesCCNA_00766 and CCNA_00767 are separated by 37 nucleotidesCCNA_00767 and CCNA_03936 are separated by 284 nucleotidesCCNA_03936 and CCNA_00768 overlap by 65 nucleotidesCCNA_00768 and CCNA_00769 overlap by 4 nucleotides CCNA_00765: CCNA_00765 - hypothetical protein, at 823,153 to 823,443 _00765 CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180 _00766 CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421 _00767 CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840 _03936 CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000 _00768 CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644 _00769 Position (kb) 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 823.229 kb on + strand, within CCNA_00765at 823.279 kb on + strand, within CCNA_00765at 823.353 kb on + strand, within CCNA_00765at 823.353 kb on + strand, within CCNA_00765at 823.361 kb on - strand, within CCNA_00765at 823.361 kb on - strand, within CCNA_00765at 823.361 kb on - strand, within CCNA_00765at 823.361 kb on - strand, within CCNA_00765at 823.368 kb on + strand, within CCNA_00765at 823.368 kb on + strand, within CCNA_00765at 823.395 kb on - strand, within CCNA_00765at 823.449 kb on + strandat 823.457 kb on - strandat 823.458 kb on + strandat 823.477 kb on + strandat 823.505 kb on + strandat 823.505 kb on + strandat 823.505 kb on - strandat 823.513 kb on - strandat 823.513 kb on - strandat 823.513 kb on - strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.516 kb on + strandat 823.524 kb on - strandat 823.524 kb on - strandat 823.524 kb on - strandat 823.524 kb on - strandat 823.536 kb on + strandat 823.536 kb on + strandat 823.537 kb on - strandat 823.539 kb on - strandat 823.560 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.574 kb on + strandat 823.575 kb on + strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.582 kb on - strandat 823.583 kb on - strandat 823.597 kb on + strandat 823.597 kb on + strandat 823.618 kb on + strandat 823.618 kb on + strandat 823.743 kb on - strand, within CCNA_00766at 823.743 kb on - strand, within CCNA_00766at 823.746 kb on + strand, within CCNA_00766at 823.754 kb on - strand, within CCNA_00766at 823.754 kb on - strand, within CCNA_00766at 823.770 kb on + strand, within CCNA_00766at 823.778 kb on - strand, within CCNA_00766at 823.790 kb on + strand, within CCNA_00766at 823.791 kb on + strand, within CCNA_00766at 823.791 kb on + strand, within CCNA_00766at 823.804 kb on - strand, within CCNA_00766at 823.824 kb on - strand, within CCNA_00766at 823.831 kb on + strand, within CCNA_00766at 823.836 kb on + strand, within CCNA_00766at 823.841 kb on + strand, within CCNA_00766at 823.844 kb on - strand, within CCNA_00766at 823.863 kb on - strand, within CCNA_00766at 823.904 kb on - strand, within CCNA_00766at 823.935 kb on - strand, within CCNA_00766at 823.935 kb on - strand, within CCNA_00766at 823.940 kb on + strand, within CCNA_00766at 823.945 kb on + strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.950 kb on + strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.975 kb on - strand, within CCNA_00766at 823.975 kb on - strand, within CCNA_00766at 824.009 kb on + strand, within CCNA_00766at 824.028 kb on + strand, within CCNA_00766at 824.037 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.091 kb on + strand, within CCNA_00766at 824.100 kb on + strand, within CCNA_00766at 824.111 kb on - strand, within CCNA_00766at 824.163 kb on - strandat 824.223 kb on - strandat 824.267 kb on + strand, within CCNA_00767at 824.309 kb on + strand, within CCNA_00767at 824.309 kb on + strand, within CCNA_00767at 824.317 kb on - strand, within CCNA_00767at 824.317 kb on - strand, within CCNA_00767at 824.368 kb on + strand, within CCNA_00767at 824.376 kb on - strand, within CCNA_00767at 824.410 kb on + strandat 824.412 kb on + strandat 824.412 kb on + strandat 824.420 kb on - strandat 824.420 kb on - strandat 824.420 kb on - strandat 824.424 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.437 kb on - strandat 824.437 kb on - strandat 824.442 kb on - strandat 824.464 kb on - strandat 824.518 kb on + strandat 824.578 kb on + strandat 824.607 kb on + strandat 824.622 kb on - strandat 824.732 kb on + strand, within CCNA_03936at 824.735 kb on - strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.772 kb on + strand, within CCNA_03936at 824.780 kb on - strandat 824.808 kb on + strandat 824.808 kb on + strandat 824.816 kb on - strandat 824.816 kb on - strandat 824.853 kb on + strand, within CCNA_00768at 824.873 kb on - strand, within CCNA_00768at 824.904 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.944 kb on + strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.980 kb on + strandat 825.001 kb on + strandat 825.016 kb on + strandat 825.016 kb on + strandat 825.024 kb on - strandat 825.030 kb on + strandat 825.048 kb on - strandat 825.065 kb on + strand, within CCNA_00769at 825.072 kb on - strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.135 kb on - strand, within CCNA_00769at 825.186 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.216 kb on - strand, within CCNA_00769at 825.226 kb on - strand, within CCNA_00769at 825.266 kb on + strand, within CCNA_00769at 825.270 kb on - strand, within CCNA_00769at 825.291 kb on - strand, within CCNA_00769at 825.317 kb on + strand, within CCNA_00769at 825.326 kb on + strand, within CCNA_00769at 825.330 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.380 kb on + strand, within CCNA_00769at 825.386 kb on - strand, within CCNA_00769at 825.391 kb on + strand, within CCNA_00769

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
823,229 + CCNA_00765 0.26 -0.9
823,279 + CCNA_00765 0.43 +0.7
823,353 + CCNA_00765 0.69 +1.0
823,353 + CCNA_00765 0.69 +0.1
823,361 - CCNA_00765 0.71 +2.0
823,361 - CCNA_00765 0.71 -0.2
823,361 - CCNA_00765 0.71 -0.8
823,361 - CCNA_00765 0.71 -0.1
823,368 + CCNA_00765 0.74 +0.8
823,368 + CCNA_00765 0.74 -0.2
823,395 - CCNA_00765 0.83 -0.3
823,449 + +0.1
823,457 - +1.1
823,458 + +0.2
823,477 + -0.7
823,505 + +1.0
823,505 + +1.0
823,505 - +1.2
823,513 - +2.4
823,513 - +0.5
823,513 - -0.6
823,516 + -1.2
823,516 + +3.9
823,516 + +0.6
823,516 + -1.8
823,516 + -0.3
823,516 + +0.2
823,516 + -0.4
823,516 + +1.9
823,516 + +0.5
823,516 + +1.4
823,524 - -1.2
823,524 - -0.2
823,524 - +0.4
823,524 - -0.5
823,536 + +1.5
823,536 + +3.6
823,537 - -0.2
823,539 - +0.3
823,560 + -1.1
823,574 + +0.2
823,574 + +2.3
823,574 + +0.3
823,574 + -2.4
823,574 + +3.0
823,574 + +1.9
823,574 + +0.3
823,575 + +3.3
823,582 - +0.6
823,582 - +0.9
823,582 - +0.3
823,582 - -2.7
823,582 - -1.6
823,582 - -0.7
823,582 - -1.5
823,582 - -0.8
823,582 - -0.3
823,582 - +0.0
823,582 - -1.1
823,582 - -0.1
823,582 - -0.3
823,583 - -0.1
823,597 + -0.7
823,597 + -0.2
823,618 + -0.5
823,618 + +0.4
823,743 - CCNA_00766 0.24 -0.8
823,743 - CCNA_00766 0.24 +0.5
823,746 + CCNA_00766 0.25 -2.5
823,754 - CCNA_00766 0.26 +0.1
823,754 - CCNA_00766 0.26 -0.8
823,770 + CCNA_00766 0.29 +0.2
823,778 - CCNA_00766 0.30 -1.3
823,790 + CCNA_00766 0.32 -0.1
823,791 + CCNA_00766 0.33 +0.7
823,791 + CCNA_00766 0.33 +2.1
823,804 - CCNA_00766 0.35 -0.5
823,824 - CCNA_00766 0.38 +0.4
823,831 + CCNA_00766 0.40 -0.6
823,836 + CCNA_00766 0.40 +0.4
823,841 + CCNA_00766 0.41 -0.4
823,844 - CCNA_00766 0.42 +0.2
823,863 - CCNA_00766 0.45 +0.9
823,904 - CCNA_00766 0.52 -2.0
823,935 - CCNA_00766 0.58 +0.1
823,935 - CCNA_00766 0.58 +1.6
823,940 + CCNA_00766 0.58 -0.6
823,945 + CCNA_00766 0.59 +0.9
823,948 - CCNA_00766 0.60 +1.1
823,948 - CCNA_00766 0.60 +1.6
823,948 - CCNA_00766 0.60 -0.7
823,950 + CCNA_00766 0.60 -1.0
823,953 - CCNA_00766 0.61 -0.4
823,953 - CCNA_00766 0.61 -0.4
823,953 - CCNA_00766 0.61 +0.8
823,967 + CCNA_00766 0.63 +0.6
823,967 + CCNA_00766 0.63 -0.7
823,967 + CCNA_00766 0.63 -1.2
823,967 + CCNA_00766 0.63 -3.5
823,975 - CCNA_00766 0.64 +1.0
823,975 - CCNA_00766 0.64 -0.2
824,009 + CCNA_00766 0.70 +0.3
824,028 + CCNA_00766 0.74 +0.5
824,037 + CCNA_00766 0.75 +1.4
824,053 + CCNA_00766 0.78 -0.7
824,053 + CCNA_00766 0.78 -1.9
824,053 + CCNA_00766 0.78 +2.0
824,053 + CCNA_00766 0.78 +0.0
824,091 + CCNA_00766 0.84 -1.0
824,100 + CCNA_00766 0.86 -0.6
824,111 - CCNA_00766 0.88 +1.6
824,163 - -0.6
824,223 - +0.8
824,267 + CCNA_00767 0.24 -1.4
824,309 + CCNA_00767 0.45 +0.2
824,309 + CCNA_00767 0.45 -0.2
824,317 - CCNA_00767 0.49 +1.0
824,317 - CCNA_00767 0.49 -0.7
824,368 + CCNA_00767 0.74 -0.4
824,376 - CCNA_00767 0.77 -0.2
824,410 + -1.3
824,412 + +0.4
824,412 + -1.3
824,420 - +0.1
824,420 - +1.3
824,420 - -0.2
824,424 + -1.0
824,429 + -1.0
824,429 + +1.2
824,429 + -1.6
824,429 + +0.0
824,437 - +0.6
824,437 - -0.2
824,442 - +0.2
824,464 - -0.8
824,518 + -1.6
824,578 + -1.6
824,607 + +0.4
824,622 - -2.0
824,732 + CCNA_03936 0.19 +0.5
824,735 - CCNA_03936 0.21 -0.2
824,764 + CCNA_03936 0.43 +1.8
824,764 + CCNA_03936 0.43 +0.3
824,772 + CCNA_03936 0.49 +0.2
824,780 - -0.9
824,808 + -0.2
824,808 + +0.9
824,816 - -0.4
824,816 - -0.5
824,853 + CCNA_00768 0.34 +0.8
824,873 - CCNA_00768 0.43 -2.2
824,904 - CCNA_00768 0.57 -0.9
824,925 - CCNA_00768 0.66 -1.6
824,925 - CCNA_00768 0.66 -1.1
824,944 + CCNA_00768 0.75 +1.6
824,950 - CCNA_00768 0.77 -1.0
824,950 - CCNA_00768 0.77 -1.2
824,980 + +1.3
825,001 + -0.5
825,016 + -0.2
825,016 + +0.5
825,024 - +0.3
825,030 + +3.3
825,048 - -1.7
825,065 + CCNA_00769 0.10 +1.3
825,072 - CCNA_00769 0.12 -0.7
825,127 + CCNA_00769 0.20 +0.8
825,127 + CCNA_00769 0.20 -1.3
825,135 - CCNA_00769 0.21 -0.4
825,186 + CCNA_00769 0.29 +0.3
825,208 + CCNA_00769 0.33 +1.2
825,208 + CCNA_00769 0.33 +1.0
825,208 + CCNA_00769 0.33 +0.3
825,216 - CCNA_00769 0.34 +1.3
825,226 - CCNA_00769 0.35 +0.2
825,266 + CCNA_00769 0.42 +0.8
825,270 - CCNA_00769 0.42 -0.2
825,291 - CCNA_00769 0.45 -1.0
825,317 + CCNA_00769 0.49 +0.2
825,326 + CCNA_00769 0.51 +1.0
825,330 - CCNA_00769 0.51 -0.1
825,335 - CCNA_00769 0.52 +0.8
825,335 - CCNA_00769 0.52 +1.8
825,335 - CCNA_00769 0.52 +0.5
825,359 + CCNA_00769 0.56 +1.1
825,359 + CCNA_00769 0.56 +1.4
825,380 + CCNA_00769 0.59 -0.1
825,386 - CCNA_00769 0.60 -0.6
825,391 + CCNA_00769 0.61 +0.2

Or see this region's nucleotide sequence