Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00765 and CCNA_00766 are separated by 158 nucleotides CCNA_00766 and CCNA_00767 are separated by 37 nucleotides CCNA_00767 and CCNA_03936 are separated by 284 nucleotides CCNA_03936 and CCNA_00768 overlap by 65 nucleotides CCNA_00768 and CCNA_00769 overlap by 4 nucleotides
CCNA_00765: CCNA_00765 - hypothetical protein, at 823,153 to 823,443
_00765
CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180
_00766
CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421
_00767
CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840
_03936
CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000
_00768
CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644
_00769
Position (kb)
824
825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 823.229 kb on + strand, within CCNA_00765 at 823.279 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.353 kb on + strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.361 kb on - strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.368 kb on + strand, within CCNA_00765 at 823.395 kb on - strand, within CCNA_00765 at 823.449 kb on + strand at 823.457 kb on - strand at 823.458 kb on + strand at 823.477 kb on + strand at 823.505 kb on + strand at 823.505 kb on + strand at 823.505 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.513 kb on - strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.516 kb on + strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.524 kb on - strand at 823.536 kb on + strand at 823.536 kb on + strand at 823.537 kb on - strand at 823.539 kb on - strand at 823.560 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.574 kb on + strand at 823.575 kb on + strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.582 kb on - strand at 823.583 kb on - strand at 823.597 kb on + strand at 823.597 kb on + strand at 823.618 kb on + strand at 823.618 kb on + strand at 823.743 kb on - strand, within CCNA_00766 at 823.743 kb on - strand, within CCNA_00766 at 823.746 kb on + strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.754 kb on - strand, within CCNA_00766 at 823.770 kb on + strand, within CCNA_00766 at 823.778 kb on - strand, within CCNA_00766 at 823.790 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.791 kb on + strand, within CCNA_00766 at 823.804 kb on - strand, within CCNA_00766 at 823.824 kb on - strand, within CCNA_00766 at 823.831 kb on + strand, within CCNA_00766 at 823.836 kb on + strand, within CCNA_00766 at 823.841 kb on + strand, within CCNA_00766 at 823.844 kb on - strand, within CCNA_00766 at 823.863 kb on - strand, within CCNA_00766 at 823.904 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.935 kb on - strand, within CCNA_00766 at 823.940 kb on + strand, within CCNA_00766 at 823.945 kb on + strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.948 kb on - strand, within CCNA_00766 at 823.950 kb on + strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.953 kb on - strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.967 kb on + strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 823.975 kb on - strand, within CCNA_00766 at 824.009 kb on + strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.037 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.053 kb on + strand, within CCNA_00766 at 824.091 kb on + strand, within CCNA_00766 at 824.100 kb on + strand, within CCNA_00766 at 824.111 kb on - strand, within CCNA_00766 at 824.163 kb on - strand at 824.223 kb on - strand at 824.267 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.368 kb on + strand, within CCNA_00767 at 824.376 kb on - strand, within CCNA_00767 at 824.410 kb on + strand at 824.412 kb on + strand at 824.412 kb on + strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.424 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.429 kb on + strand at 824.437 kb on - strand at 824.437 kb on - strand at 824.442 kb on - strand at 824.464 kb on - strand at 824.518 kb on + strand at 824.578 kb on + strand at 824.607 kb on + strand at 824.622 kb on - strand at 824.732 kb on + strand, within CCNA_03936 at 824.735 kb on - strand, within CCNA_03936 at 824.764 kb on + strand, within CCNA_03936 at 824.764 kb on + strand, within CCNA_03936 at 824.772 kb on + strand, within CCNA_03936 at 824.780 kb on - strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.816 kb on - strand at 824.816 kb on - strand at 824.853 kb on + strand, within CCNA_00768 at 824.873 kb on - strand, within CCNA_00768 at 824.904 kb on - strand, within CCNA_00768 at 824.925 kb on - strand, within CCNA_00768 at 824.925 kb on - strand, within CCNA_00768 at 824.944 kb on + strand, within CCNA_00768 at 824.950 kb on - strand, within CCNA_00768 at 824.950 kb on - strand, within CCNA_00768 at 824.980 kb on + strand at 825.001 kb on + strand at 825.016 kb on + strand at 825.016 kb on + strand at 825.024 kb on - strand at 825.030 kb on + strand at 825.048 kb on - strand at 825.065 kb on + strand, within CCNA_00769 at 825.072 kb on - strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.135 kb on - strand, within CCNA_00769 at 825.186 kb on + strand, within CCNA_00769 at 825.208 kb on + strand, within CCNA_00769 at 825.208 kb on + strand, within CCNA_00769 at 825.208 kb on + strand, within CCNA_00769 at 825.216 kb on - strand, within CCNA_00769 at 825.226 kb on - strand, within CCNA_00769 at 825.266 kb on + strand, within CCNA_00769 at 825.270 kb on - strand, within CCNA_00769 at 825.291 kb on - strand, within CCNA_00769 at 825.317 kb on + strand, within CCNA_00769 at 825.326 kb on + strand, within CCNA_00769 at 825.330 kb on - strand, within CCNA_00769 at 825.335 kb on - strand, within CCNA_00769 at 825.335 kb on - strand, within CCNA_00769 at 825.335 kb on - strand, within CCNA_00769 at 825.359 kb on + strand, within CCNA_00769 at 825.359 kb on + strand, within CCNA_00769 at 825.380 kb on + strand, within CCNA_00769 at 825.386 kb on - strand, within CCNA_00769 at 825.391 kb on + strand, within CCNA_00769
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 823,229 + CCNA_00765 0.26 -0.9 823,279 + CCNA_00765 0.43 +0.7 823,353 + CCNA_00765 0.69 +1.0 823,353 + CCNA_00765 0.69 +0.1 823,361 - CCNA_00765 0.71 +2.0 823,361 - CCNA_00765 0.71 -0.2 823,361 - CCNA_00765 0.71 -0.8 823,361 - CCNA_00765 0.71 -0.1 823,368 + CCNA_00765 0.74 +0.8 823,368 + CCNA_00765 0.74 -0.2 823,395 - CCNA_00765 0.83 -0.3 823,449 + +0.1 823,457 - +1.1 823,458 + +0.2 823,477 + -0.7 823,505 + +1.0 823,505 + +1.0 823,505 - +1.2 823,513 - +2.4 823,513 - +0.5 823,513 - -0.6 823,516 + -1.2 823,516 + +3.9 823,516 + +0.6 823,516 + -1.8 823,516 + -0.3 823,516 + +0.2 823,516 + -0.4 823,516 + +1.9 823,516 + +0.5 823,516 + +1.4 823,524 - -1.2 823,524 - -0.2 823,524 - +0.4 823,524 - -0.5 823,536 + +1.5 823,536 + +3.6 823,537 - -0.2 823,539 - +0.3 823,560 + -1.1 823,574 + +0.2 823,574 + +2.3 823,574 + +0.3 823,574 + -2.4 823,574 + +3.0 823,574 + +1.9 823,574 + +0.3 823,575 + +3.3 823,582 - +0.6 823,582 - +0.9 823,582 - +0.3 823,582 - -2.7 823,582 - -1.6 823,582 - -0.7 823,582 - -1.5 823,582 - -0.8 823,582 - -0.3 823,582 - +0.0 823,582 - -1.1 823,582 - -0.1 823,582 - -0.3 823,583 - -0.1 823,597 + -0.7 823,597 + -0.2 823,618 + -0.5 823,618 + +0.4 823,743 - CCNA_00766 0.24 -0.8 823,743 - CCNA_00766 0.24 +0.5 823,746 + CCNA_00766 0.25 -2.5 823,754 - CCNA_00766 0.26 +0.1 823,754 - CCNA_00766 0.26 -0.8 823,770 + CCNA_00766 0.29 +0.2 823,778 - CCNA_00766 0.30 -1.3 823,790 + CCNA_00766 0.32 -0.1 823,791 + CCNA_00766 0.33 +0.7 823,791 + CCNA_00766 0.33 +2.1 823,804 - CCNA_00766 0.35 -0.5 823,824 - CCNA_00766 0.38 +0.4 823,831 + CCNA_00766 0.40 -0.6 823,836 + CCNA_00766 0.40 +0.4 823,841 + CCNA_00766 0.41 -0.4 823,844 - CCNA_00766 0.42 +0.2 823,863 - CCNA_00766 0.45 +0.9 823,904 - CCNA_00766 0.52 -2.0 823,935 - CCNA_00766 0.58 +0.1 823,935 - CCNA_00766 0.58 +1.6 823,940 + CCNA_00766 0.58 -0.6 823,945 + CCNA_00766 0.59 +0.9 823,948 - CCNA_00766 0.60 +1.1 823,948 - CCNA_00766 0.60 +1.6 823,948 - CCNA_00766 0.60 -0.7 823,950 + CCNA_00766 0.60 -1.0 823,953 - CCNA_00766 0.61 -0.4 823,953 - CCNA_00766 0.61 -0.4 823,953 - CCNA_00766 0.61 +0.8 823,967 + CCNA_00766 0.63 +0.6 823,967 + CCNA_00766 0.63 -0.7 823,967 + CCNA_00766 0.63 -1.2 823,967 + CCNA_00766 0.63 -3.5 823,975 - CCNA_00766 0.64 +1.0 823,975 - CCNA_00766 0.64 -0.2 824,009 + CCNA_00766 0.70 +0.3 824,028 + CCNA_00766 0.74 +0.5 824,037 + CCNA_00766 0.75 +1.4 824,053 + CCNA_00766 0.78 -0.7 824,053 + CCNA_00766 0.78 -1.9 824,053 + CCNA_00766 0.78 +2.0 824,053 + CCNA_00766 0.78 +0.0 824,091 + CCNA_00766 0.84 -1.0 824,100 + CCNA_00766 0.86 -0.6 824,111 - CCNA_00766 0.88 +1.6 824,163 - -0.6 824,223 - +0.8 824,267 + CCNA_00767 0.24 -1.4 824,309 + CCNA_00767 0.45 +0.2 824,309 + CCNA_00767 0.45 -0.2 824,317 - CCNA_00767 0.49 +1.0 824,317 - CCNA_00767 0.49 -0.7 824,368 + CCNA_00767 0.74 -0.4 824,376 - CCNA_00767 0.77 -0.2 824,410 + -1.3 824,412 + +0.4 824,412 + -1.3 824,420 - +0.1 824,420 - +1.3 824,420 - -0.2 824,424 + -1.0 824,429 + -1.0 824,429 + +1.2 824,429 + -1.6 824,429 + +0.0 824,437 - +0.6 824,437 - -0.2 824,442 - +0.2 824,464 - -0.8 824,518 + -1.6 824,578 + -1.6 824,607 + +0.4 824,622 - -2.0 824,732 + CCNA_03936 0.19 +0.5 824,735 - CCNA_03936 0.21 -0.2 824,764 + CCNA_03936 0.43 +1.8 824,764 + CCNA_03936 0.43 +0.3 824,772 + CCNA_03936 0.49 +0.2 824,780 - -0.9 824,808 + -0.2 824,808 + +0.9 824,816 - -0.4 824,816 - -0.5 824,853 + CCNA_00768 0.34 +0.8 824,873 - CCNA_00768 0.43 -2.2 824,904 - CCNA_00768 0.57 -0.9 824,925 - CCNA_00768 0.66 -1.6 824,925 - CCNA_00768 0.66 -1.1 824,944 + CCNA_00768 0.75 +1.6 824,950 - CCNA_00768 0.77 -1.0 824,950 - CCNA_00768 0.77 -1.2 824,980 + +1.3 825,001 + -0.5 825,016 + -0.2 825,016 + +0.5 825,024 - +0.3 825,030 + +3.3 825,048 - -1.7 825,065 + CCNA_00769 0.10 +1.3 825,072 - CCNA_00769 0.12 -0.7 825,127 + CCNA_00769 0.20 +0.8 825,127 + CCNA_00769 0.20 -1.3 825,135 - CCNA_00769 0.21 -0.4 825,186 + CCNA_00769 0.29 +0.3 825,208 + CCNA_00769 0.33 +1.2 825,208 + CCNA_00769 0.33 +1.0 825,208 + CCNA_00769 0.33 +0.3 825,216 - CCNA_00769 0.34 +1.3 825,226 - CCNA_00769 0.35 +0.2 825,266 + CCNA_00769 0.42 +0.8 825,270 - CCNA_00769 0.42 -0.2 825,291 - CCNA_00769 0.45 -1.0 825,317 + CCNA_00769 0.49 +0.2 825,326 + CCNA_00769 0.51 +1.0 825,330 - CCNA_00769 0.51 -0.1 825,335 - CCNA_00769 0.52 +0.8 825,335 - CCNA_00769 0.52 +1.8 825,335 - CCNA_00769 0.52 +0.5 825,359 + CCNA_00769 0.56 +1.1 825,359 + CCNA_00769 0.56 +1.4 825,380 + CCNA_00769 0.59 -0.1 825,386 - CCNA_00769 0.60 -0.6 825,391 + CCNA_00769 0.61 +0.2
Or see this region's nucleotide sequence