Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00641 and CCNA_00642 overlap by 31 nucleotides CCNA_00642 and CCNA_00643 are separated by 456 nucleotides CCNA_00643 and CCNA_00644 are separated by 510 nucleotides
CCNA_00641: CCNA_00641 - hypothetical protein, at 692,376 to 692,672
_00641
CCNA_00642: CCNA_00642 - hypothetical protein, at 692,642 to 692,899
_00642
CCNA_00643: CCNA_00643 - hypothetical protein, at 693,356 to 693,502
_00643
CCNA_00644: CCNA_00644 - hypothetical protein, at 694,013 to 695,422
_00644
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 692.358 kb on - strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.368 kb on - strand at 692.368 kb on - strand at 692.389 kb on - strand at 692.389 kb on - strand at 692.402 kb on + strand at 692.405 kb on - strand at 692.451 kb on + strand, within CCNA_00641 at 692.463 kb on + strand, within CCNA_00641 at 692.484 kb on + strand, within CCNA_00641 at 692.496 kb on + strand, within CCNA_00641 at 692.501 kb on + strand, within CCNA_00641 at 692.503 kb on - strand, within CCNA_00641 at 692.504 kb on - strand, within CCNA_00641 at 692.512 kb on + strand, within CCNA_00641 at 692.515 kb on + strand, within CCNA_00641 at 692.521 kb on - strand, within CCNA_00641 at 692.535 kb on + strand, within CCNA_00641 at 692.547 kb on + strand, within CCNA_00641 at 692.555 kb on - strand, within CCNA_00641 at 692.568 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.612 kb on + strand, within CCNA_00641 at 692.625 kb on - strand, within CCNA_00641 at 692.669 kb on - strand at 692.691 kb on - strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.713 kb on + strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.793 kb on + strand, within CCNA_00642 at 692.801 kb on - strand, within CCNA_00642 at 692.822 kb on - strand, within CCNA_00642 at 692.827 kb on - strand, within CCNA_00642 at 692.834 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.869 kb on + strand, within CCNA_00642 at 692.875 kb on - strand at 692.929 kb on - strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.020 kb on - strand at 693.027 kb on - strand at 693.066 kb on - strand at 693.066 kb on - strand at 693.076 kb on + strand at 693.086 kb on + strand at 693.094 kb on - strand at 693.107 kb on + strand at 693.132 kb on + strand at 693.135 kb on - strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.215 kb on + strand at 693.227 kb on + strand at 693.230 kb on + strand at 693.233 kb on - strand at 693.239 kb on + strand at 693.239 kb on + strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.253 kb on + strand at 693.279 kb on + strand at 693.294 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.311 kb on + strand at 693.311 kb on + strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.332 kb on - strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.356 kb on - strand at 693.395 kb on - strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.417 kb on + strand, within CCNA_00643 at 693.420 kb on - strand, within CCNA_00643 at 693.465 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.484 kb on - strand, within CCNA_00643 at 693.495 kb on + strand at 693.546 kb on - strand at 693.579 kb on + strand at 693.580 kb on + strand at 693.580 kb on + strand at 693.589 kb on - strand at 693.648 kb on + strand at 693.680 kb on + strand at 693.681 kb on + strand at 693.729 kb on - strand at 693.744 kb on + strand at 693.744 kb on + strand at 693.747 kb on - strand at 693.757 kb on - strand at 693.783 kb on - strand at 693.808 kb on + strand at 693.848 kb on + strand at 693.856 kb on + strand at 693.858 kb on + strand at 693.858 kb on + strand at 693.890 kb on + strand at 693.913 kb on + strand at 693.913 kb on + strand at 693.921 kb on - strand at 693.931 kb on + strand at 693.931 kb on + strand at 693.931 kb on + strand at 693.939 kb on - strand at 694.034 kb on - strand at 694.048 kb on + strand at 694.049 kb on + strand at 694.069 kb on + strand at 694.069 kb on + strand at 694.069 kb on + strand at 694.077 kb on - strand at 694.090 kb on + strand at 694.094 kb on + strand at 694.177 kb on + strand, within CCNA_00644 at 694.177 kb on + strand, within CCNA_00644 at 694.185 kb on - strand, within CCNA_00644 at 694.185 kb on - strand, within CCNA_00644 at 694.193 kb on + strand, within CCNA_00644 at 694.233 kb on - strand, within CCNA_00644 at 694.245 kb on + strand, within CCNA_00644 at 694.245 kb on + strand, within CCNA_00644 at 694.261 kb on - strand, within CCNA_00644 at 694.264 kb on + strand, within CCNA_00644 at 694.268 kb on - strand, within CCNA_00644 at 694.272 kb on + strand, within CCNA_00644 at 694.282 kb on + strand, within CCNA_00644 at 694.285 kb on - strand, within CCNA_00644 at 694.285 kb on - strand, within CCNA_00644 at 694.298 kb on - strand, within CCNA_00644 at 694.323 kb on - strand, within CCNA_00644 at 694.349 kb on - strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.365 kb on - strand, within CCNA_00644 at 694.365 kb on - strand, within CCNA_00644 at 694.386 kb on - strand, within CCNA_00644 at 694.407 kb on + strand, within CCNA_00644 at 694.415 kb on - strand, within CCNA_00644 at 694.422 kb on - strand, within CCNA_00644 at 694.422 kb on - strand, within CCNA_00644 at 694.438 kb on - strand, within CCNA_00644 at 694.459 kb on - strand, within CCNA_00644 at 694.501 kb on - strand, within CCNA_00644 at 694.502 kb on - strand, within CCNA_00644
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 692,358 - -0.7 692,360 + +1.8 692,360 + +2.7 692,360 + -1.9 692,368 - +0.0 692,368 - +0.9 692,389 - -0.6 692,389 - +0.1 692,402 + -0.7 692,405 - +0.1 692,451 + CCNA_00641 0.25 -0.1 692,463 + CCNA_00641 0.29 -0.8 692,484 + CCNA_00641 0.36 +0.1 692,496 + CCNA_00641 0.40 -1.0 692,501 + CCNA_00641 0.42 -1.1 692,503 - CCNA_00641 0.43 +0.2 692,504 - CCNA_00641 0.43 +0.9 692,512 + CCNA_00641 0.46 +0.2 692,515 + CCNA_00641 0.47 -1.5 692,521 - CCNA_00641 0.49 +0.6 692,535 + CCNA_00641 0.54 -0.3 692,547 + CCNA_00641 0.58 -0.4 692,555 - CCNA_00641 0.60 +0.2 692,568 - CCNA_00641 0.65 -1.7 692,593 - CCNA_00641 0.73 -0.2 692,593 - CCNA_00641 0.73 -3.0 692,612 + CCNA_00641 0.79 -1.0 692,625 - CCNA_00641 0.84 -0.5 692,669 - -0.6 692,691 - CCNA_00642 0.19 +0.4 692,712 + CCNA_00642 0.27 -1.1 692,712 + CCNA_00642 0.27 -2.3 692,712 + CCNA_00642 0.27 -1.1 692,713 + CCNA_00642 0.28 -0.3 692,721 - CCNA_00642 0.31 +1.4 692,721 - CCNA_00642 0.31 -1.0 692,721 - CCNA_00642 0.31 -1.0 692,721 - CCNA_00642 0.31 -1.6 692,721 - CCNA_00642 0.31 +3.1 692,721 - CCNA_00642 0.31 -0.8 692,721 - CCNA_00642 0.31 +1.2 692,793 + CCNA_00642 0.59 -2.5 692,801 - CCNA_00642 0.62 -0.8 692,822 - CCNA_00642 0.70 +0.7 692,827 - CCNA_00642 0.72 -1.6 692,834 + CCNA_00642 0.74 -1.0 692,867 + CCNA_00642 0.87 -2.0 692,867 + CCNA_00642 0.87 -0.1 692,869 + CCNA_00642 0.88 +0.1 692,875 - +0.7 692,929 - +0.9 693,001 + +1.7 693,001 + +0.4 693,001 + +1.4 693,001 + +0.2 693,001 + +1.7 693,001 + -0.5 693,009 - -0.6 693,009 - -1.8 693,009 - -1.0 693,009 - +0.9 693,020 - -0.8 693,027 - -1.8 693,066 - +0.4 693,066 - -0.2 693,076 + +2.2 693,086 + -1.3 693,094 - -0.6 693,107 + -1.4 693,132 + +0.0 693,135 - +0.7 693,180 + +1.2 693,180 + +0.4 693,180 + -1.9 693,188 - -0.1 693,188 - -2.0 693,188 - +0.3 693,203 + -2.0 693,203 + -1.2 693,203 + -0.4 693,203 + +0.8 693,203 + +0.9 693,203 + +0.5 693,203 + +0.0 693,203 + +0.6 693,203 + -1.1 693,203 + +0.4 693,203 + +0.1 693,215 + -2.4 693,227 + +0.2 693,230 + -0.0 693,233 - +1.1 693,239 + +0.1 693,239 + +0.2 693,247 - -0.5 693,247 - -0.1 693,247 - +1.9 693,247 - -0.8 693,247 - +0.6 693,253 + +0.7 693,279 + -0.7 693,294 + +1.4 693,306 + +1.4 693,306 + -1.2 693,306 + -1.1 693,311 + -0.6 693,311 + -0.5 693,314 - -1.3 693,314 - -0.2 693,314 - -1.1 693,314 - -0.7 693,332 - -0.0 693,338 + +3.7 693,338 + +0.0 693,338 + +0.5 693,338 + +0.6 693,338 + +0.4 693,338 + -1.1 693,338 + -1.4 693,338 + +0.6 693,338 + +1.2 693,338 + +0.1 693,346 - -0.2 693,346 - +2.5 693,346 - -0.2 693,346 - +1.6 693,346 - +0.3 693,346 - -0.9 693,346 - -0.1 693,346 - -0.4 693,346 - +0.2 693,346 - -1.6 693,356 - -0.5 693,395 - CCNA_00643 0.27 +0.2 693,412 + CCNA_00643 0.38 +0.1 693,412 + CCNA_00643 0.38 -1.4 693,417 + CCNA_00643 0.41 -1.7 693,420 - CCNA_00643 0.44 +0.5 693,465 + CCNA_00643 0.74 -1.0 693,476 + CCNA_00643 0.82 -0.8 693,476 + CCNA_00643 0.82 -1.3 693,484 - CCNA_00643 0.87 +0.2 693,495 + +0.5 693,546 - -0.8 693,579 + -0.1 693,580 + -0.1 693,580 + -2.3 693,589 - -0.1 693,648 + +0.1 693,680 + -0.8 693,681 + -1.2 693,729 - -0.1 693,744 + +0.6 693,744 + +0.5 693,747 - -0.8 693,757 - -2.4 693,783 - +0.5 693,808 + +0.0 693,848 + -1.9 693,856 + -0.4 693,858 + -1.2 693,858 + -2.3 693,890 + -0.4 693,913 + +1.6 693,913 + -1.0 693,921 - -1.1 693,931 + -0.3 693,931 + -0.6 693,931 + -0.6 693,939 - -1.0 694,034 - +1.7 694,048 + -1.0 694,049 + -0.8 694,069 + +1.1 694,069 + +1.8 694,069 + -0.4 694,077 - +0.9 694,090 + -3.0 694,094 + -2.3 694,177 + CCNA_00644 0.12 +0.1 694,177 + CCNA_00644 0.12 -0.6 694,185 - CCNA_00644 0.12 -0.2 694,185 - CCNA_00644 0.12 -2.9 694,193 + CCNA_00644 0.13 -0.3 694,233 - CCNA_00644 0.16 +1.0 694,245 + CCNA_00644 0.16 -0.8 694,245 + CCNA_00644 0.16 +0.7 694,261 - CCNA_00644 0.18 +0.7 694,264 + CCNA_00644 0.18 +2.5 694,268 - CCNA_00644 0.18 -0.3 694,272 + CCNA_00644 0.18 -1.6 694,282 + CCNA_00644 0.19 +0.5 694,285 - CCNA_00644 0.19 -0.4 694,285 - CCNA_00644 0.19 +0.6 694,298 - CCNA_00644 0.20 +0.5 694,323 - CCNA_00644 0.22 +1.1 694,349 - CCNA_00644 0.24 -2.2 694,357 + CCNA_00644 0.24 -1.8 694,357 + CCNA_00644 0.24 -0.9 694,357 + CCNA_00644 0.24 -1.6 694,365 - CCNA_00644 0.25 -0.2 694,365 - CCNA_00644 0.25 -0.2 694,386 - CCNA_00644 0.26 -1.4 694,407 + CCNA_00644 0.28 +0.9 694,415 - CCNA_00644 0.29 -0.7 694,422 - CCNA_00644 0.29 +0.6 694,422 - CCNA_00644 0.29 +0.6 694,438 - CCNA_00644 0.30 -2.6 694,459 - CCNA_00644 0.32 -0.7 694,501 - CCNA_00644 0.35 -0.2 694,502 - CCNA_00644 0.35 -1.1
Or see this region's nucleotide sequence